Experiment set3H19 for Pseudomonas stutzeri RCH2
LB with Nickel (II) chloride hexahydrate 0.8 mM
Group: stressMedia: LB + Nickel (II) chloride hexahydrate (0.8 mM)
Culturing: psRCH2_ML7, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Kelly on 6/24/2013
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 555 A3,A4
Specific Phenotypes
For 12 genes in this experiment
For stress Nickel (II) chloride hexahydrate in Pseudomonas stutzeri RCH2
For stress Nickel (II) chloride hexahydrate across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Tryptophan metabolism
- Fatty acid metabolism
- Arginine and proline metabolism
- Glutathione metabolism
- Pyruvate metabolism
- Methane metabolism
- Aminoacyl-tRNA biosynthesis
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| superoxide radicals degradation | 2 | 2 | 1 |
| methanol oxidation to formaldehyde IV | 2 | 1 | 1 |
| ethanol degradation IV | 3 | 3 | 1 |
| glutathione-peroxide redox reactions | 3 | 2 | 1 |
| reactive oxygen species degradation | 4 | 4 | 1 |
| octane oxidation | 5 | 3 | 1 |
| methylgallate degradation | 6 | 2 | 1 |
| protocatechuate degradation I (meta-cleavage pathway) | 8 | 3 | 1 |
| superpathway of vanillin and vanillate degradation | 10 | 3 | 1 |
| syringate degradation | 12 | 3 | 1 |
| tRNA charging | 21 | 20 | 1 |