Experiment set3H18 for Shewanella amazonensis SB2B

Compare to:

D-Glucosamine Hydrochloride nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
Sama_0937 +5.3 36.5 LacI family transcription regulator (RefSeq) compare
Sama_3129 +4.1 10.3 sensory box histidine kinase/response regulator (RefSeq) compare
Sama_1004 +3.9 32.7 U32 family peptidase (RefSeq) compare
Sama_1662 +3.6 7.9 alpha amylase, catalytic region (RefSeq) compare
Sama_1002 +3.5 11.9 ferredoxin, 4Fe-4S (RefSeq) compare
Sama_0534 +3.1 23.0 hypothetical protein (RefSeq) compare
Sama_1031 +3.0 26.5 hybrid sensory histidine kinase BarA (RefSeq) compare
Sama_1607 +2.7 16.6 response regulator (RefSeq) compare
Sama_1710 +2.6 9.1 alpha keto acid dehydrogenase complex, E1 component, beta subunit (RefSeq) compare
Sama_1711 +2.6 18.1 dihydrolipoamide acetyltransferase (RefSeq) compare
Sama_1737 ihfB +2.4 7.1 integration host factor subunit beta (RefSeq) compare
Sama_2121 +2.3 8.7 short chain dehydrogenase (RefSeq) compare
Sama_0086 +2.3 18.9 coproporphyrinogen III oxidase (RefSeq) compare
Sama_1709 +2.3 17.4 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (RefSeq) compare
Sama_2317 flgC +2.2 7.6 flagellar basal body rod protein FlgC (RefSeq) compare
Sama_0808 +2.2 4.6 DEAD/DEAH box helicase domain-containing protein (RefSeq) compare
Sama_1400 +2.1 2.9 periplasmic binding protein/LacI transcriptional regulator (RefSeq) compare
Sama_1247 +2.1 8.5 primosomal replication protein N'', putative (RefSeq) compare
Sama_3633 +2.0 18.9 iron-sulfur cluster-binding protein (RefSeq) compare
Sama_1845 +2.0 12.3 methyltransferase, putative (RefSeq) compare
Sama_0828 +2.0 2.9 putative glycerol-3-phosphate acyltransferase PlsY (RefSeq) compare
Sama_2220 +2.0 16.5 transcriptional regulatory protein TyrR (RefSeq) compare
Sama_1601 +2.0 7.6 hypothetical protein (RefSeq) compare
Sama_2240 +2.0 11.9 glucose-1-phosphate thymidylyltransferase (RefSeq) compare
Sama_1846 +1.8 14.1 methyltransferase, putative (RefSeq) compare
Sama_2287 fliP +1.8 10.4 flagellar biosynthesis protein FliP (RefSeq) compare
Sama_2312 flgH +1.8 9.5 flagellar basal body L-ring protein (RefSeq) compare
Sama_2286 +1.8 5.2 flagellar biosynthetic protein FliQ (RefSeq) compare
Sama_2313 flgG +1.8 10.5 flagellar basal body rod protein FlgG (RefSeq) compare
Sama_2283 flhA +1.8 14.0 flagellar biosynthesis protein FlhA (RefSeq) compare
Sama_2285 fliR +1.8 9.9 flagellar biosynthesis protein FliR (RefSeq) compare
Sama_2284 flhB +1.7 9.3 flagellar biosynthesis protein FlhB (RefSeq) compare
Sama_1793 +1.7 6.4 cytochrome c oxidase, cbb3-type, CcoQ subunit (RefSeq) compare
Sama_3066 +1.7 6.3 23S rRNA (guanosine-2'-O-)-methyltransferase (RefSeq) compare
Sama_2314 flgF +1.6 7.0 flagellar basal body rod protein FlgF (RefSeq) compare
Sama_2297 fliF +1.6 8.9 flagellar MS-ring protein (RefSeq) compare
Sama_3019 +1.6 6.1 ubiquinol-cytochrome c reductase cytochrome c1 subunit (RefSeq) compare
Sama_3093 +1.6 13.3 magnesium transporter (RefSeq) compare
Sama_2288 +1.6 7.8 flagellar protein FliO (RefSeq) compare
Sama_2293 +1.6 7.2 flagellar protein FliJ (RefSeq) compare
Sama_2321 flgA +1.6 12.4 flagellar basal body P-ring biosynthesis protein FlgA (RefSeq) compare
Sama_3203 +1.5 3.4 hypothetical protein (RefSeq) compare
Sama_2294 fliI +1.5 9.8 flagellum-specific ATP synthase (RefSeq) compare
Sama_0379 +1.5 13.7 hypothetical protein (RefSeq) compare
Sama_0320 +1.5 7.5 tRNA nucleotidyltransferase (RefSeq) compare
Sama_3089 +1.5 8.5 ribosomal subunit interface protein (RefSeq) compare
Sama_0397 +1.5 12.5 hypothetical protein (RefSeq) compare
Sama_2315 flgE +1.5 10.8 flagellar hook protein FlgE (RefSeq) compare
Sama_2298 +1.5 7.8 flagellar hook-basal body complex protein (FliE) (RefSeq) compare
Sama_2280 fliA +1.5 7.6 flagellar biosynthesis sigma factor (RefSeq) compare
Sama_0878 +1.5 6.1 GTP-binding protein LepA (RefSeq) compare
Sama_3021 +1.5 10.1 ubiquinol--cytochrome-c reductase (RefSeq) compare
Sama_1360 +1.4 9.0 enoyl-CoA hydratase/isomerase (RefSeq) compare
Sama_2311 flgI +1.4 9.5 flagellar basal body P-ring protein (RefSeq) compare
Sama_2318 flgB +1.4 5.7 flagellar basal body rod protein FlgB (RefSeq) compare
Sama_R0014 +1.4 2.3 16S ribosomal RNA (RefSeq) compare
Sama_1594 +1.4 3.7 hypothetical protein (RefSeq) compare
Sama_2292 +1.4 8.2 flagellar hook-length control protein FliK (RefSeq) compare
Sama_2936 +1.4 11.9 hypothetical protein (RefSeq) compare
Sama_1170 +1.3 8.5 electron transfer flavoprotein, alpha subunit (RefSeq) compare
Sama_3068 +1.3 9.5 sodium-type flagellar protein MotX (RefSeq) compare
Sama_2124 +1.3 5.6 pseudouridine synthase, Rsu (RefSeq) compare
Sama_2295 fliH +1.3 5.7 flagellar assembly protein H (RefSeq) compare
Sama_2244 +1.3 9.9 polysaccharide biosynthesis protein (RefSeq) compare
Sama_1791 +1.3 9.8 cytochrome c oxidase, cbb3-type, subunit I (RefSeq) compare
Sama_1794 +1.3 8.7 cytochrome c oxidase, cbb3-type, subunit III (RefSeq) compare
Sama_2316 flgD +1.3 6.8 flagellar basal body rod modification protein (RefSeq) compare
Sama_1361 +1.3 10.4 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Sama_2296 fliG +1.2 4.6 flagellar motor switch protein G (RefSeq) compare
Sama_2335 +1.2 8.1 putative sugar-phosphate nucleotide transferase (RefSeq) compare
Sama_1796 +1.2 9.5 cation transporter E1-E2 family ATPase (RefSeq) compare
Sama_1702 +1.2 5.2 LexA regulated protein (RefSeq) compare
Sama_3080 +1.2 6.9 hypothetical protein (RefSeq) compare
Sama_3081 +1.2 7.6 ABC transporter, ATP-binding protein, putative (RefSeq) compare
Sama_2301 +1.2 5.5 response regulator receiver protein (RefSeq) compare
Sama_2432 motB +1.2 5.6 flagellar motor protein MotB (RefSeq) compare
Sama_2644 +1.2 9.5 glutamate--ammonia ligase (RefSeq) compare
Sama_2282 flhF +1.1 6.4 flagellar biosynthesis regulator FlhF (RefSeq) compare
Sama_1883 +1.1 7.8 hypothetical protein (RefSeq) compare
Sama_2092 +1.1 8.0 OmpA/MotB (RefSeq) compare
Sama_3353 +1.1 5.8 hypothetical protein (RefSeq) compare
Sama_1722 ansA +1.1 3.9 cytoplasmic asparaginase I (RefSeq) compare
Sama_2302 fliS +1.1 4.5 flagellar protein FliS (RefSeq) compare
Sama_3079 +1.1 3.3 mce-related protein (RefSeq) compare
Sama_1169 +1.1 5.2 electron transfer flavoprotein, beta subunit (RefSeq) compare
Sama_1721 +1.1 2.5 hypothetical protein (RefSeq) compare
Sama_2433 +1.1 5.8 flagellar motor protein PomA (RefSeq) compare
Sama_3090 +1.1 4.8 nitrogen regulatory IIA protein (RefSeq) compare
Sama_1792 +1.0 5.0 cytochrome c oxidase, cbb3-type, subunit II (RefSeq) compare
Sama_1795 +1.0 4.3 hypothetical protein (RefSeq) compare
Sama_2521 +1.0 5.7 agmatine deiminase (RefSeq) compare
Sama_3074 +1.0 6.5 protease DegS (RefSeq) compare
Sama_2160 +1.0 6.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase (RefSeq) compare
Sama_1685 +1.0 2.3 hypothetical protein (RefSeq) compare
Sama_0396 zntR +1.0 3.1 zinc-responsive transcriptional regulator (RefSeq) compare
Sama_3523 +1.0 8.8 electron-transferring-flavoprotein dehydrogenase (RefSeq) compare
Sama_3078 +1.0 5.7 hypothetical protein (RefSeq) compare
Sama_1146 +1.0 3.8 membrane-associated zinc metalloprotease, putative (RefSeq) compare
Sama_0091 +1.0 6.5 cytochrome c, class I (RefSeq) compare
Sama_2250 +1.0 2.6 acetoacetyl-CoA reductase (RefSeq) compare
Sama_3020 +1.0 8.0 ubiquinol-cytochrome c reductase, cytochrome b (RefSeq) compare
Sama_2306 +1.0 5.2 flagellin-like protein (RefSeq) compare
Sama_2290 fliM +1.0 3.7 flagellar motor switch protein FliM (RefSeq) compare
Sama_1362 +1.0 7.0 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
Sama_3207 +1.0 4.4 Sec-independent periplasmic protein translocation protein TatC (RefSeq) compare
Sama_3077 +1.0 3.9 SpoIIAA family protein (RefSeq) compare
Sama_2410 +1.0 5.0 hypothetical protein (RefSeq) compare
Sama_1798 +0.9 4.3 hypothetical protein (RefSeq) compare
Sama_2336 +0.9 4.7 N-acylneuraminate cytidylyltransferase (RefSeq) compare
Sama_2074 +0.9 4.6 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) compare
Sama_1330 +0.9 7.4 transcription-repair coupling factor (RefSeq) compare
Sama_2265 +0.9 4.3 transcriptional activator rfaH, putative (RefSeq) compare
Sama_0099 +0.9 6.7 TetR family transcriptional regulator (RefSeq) compare
Sama_2563 +0.9 3.4 hypothetical protein (RefSeq) compare
Sama_1494 +0.9 5.1 phosphate acetyltransferase (RefSeq) compare
Sama_2094 +0.9 3.7 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq) compare
Sama_2191 secD +0.9 3.2 preprotein translocase subunit SecD (RefSeq) compare
Sama_0109 +0.9 7.0 glycosyl transferase, group 1 family protein (RefSeq) compare
Sama_0660 +0.8 4.3 hypothetical protein (RefSeq) compare
Sama_0874 +0.8 2.6 RNA polymerase sigma factor RpoE (RefSeq) compare
Sama_2164 +0.8 5.6 sensory box protein (RefSeq) compare
Sama_2039 yebU +0.8 3.7 rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) compare
Sama_3415 +0.8 7.0 virulence regulator BipA (RefSeq) compare
Sama_2193 tgt +0.8 2.6 queuine tRNA-ribosyltransferase (RefSeq) compare
Sama_1704 +0.8 5.6 alpha/beta fold family hydrolase (RefSeq) compare
Sama_0771 +0.8 2.8 hypoxanthine phosphoribosyltransferase (RefSeq) compare
Sama_1007 +0.8 3.1 4-hydroxybenzoyl-CoA thioesterase (RefSeq) compare
Sama_3170 metL +0.8 6.5 bifunctional aspartate kinase II/homoserine dehydrogenase II (RefSeq) compare
Sama_2246 +0.8 2.8 methionyl-tRNA formyltransferase (RefSeq) compare
Sama_2291 fliL +0.8 2.2 flagellar basal body-associated protein FliL (RefSeq) compare
Sama_0440 hslU +0.8 3.9 ATP-dependent protease ATP-binding subunit HslU (RefSeq) compare
Sama_2322 +0.8 3.0 putative anti-sigma-28 factor, FlgM (RefSeq) compare
Sama_1600 rlmL +0.8 4.5 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Sama_0471 +0.8 5.7 ribonuclease G (RefSeq) compare
Sama_2481 +0.8 5.2 hypothetical protein (RefSeq) compare
Sama_2638 +0.8 6.0 putative oxidoreductase (RefSeq) compare
Sama_2844 +0.8 1.9 hypothetical protein (RefSeq) compare
Sama_2341 +0.8 3.3 TetR family transcriptional regulator (RefSeq) compare
Sama_2156 +0.8 2.2 hypothetical protein (RefSeq) compare
Sama_2326 +0.8 4.2 hypothetical protein (RefSeq) compare
Sama_2268 +0.8 4.1 vacJ lipoprotein, putative (RefSeq) compare
Sama_0118 +0.8 3.8 hypothetical protein (RefSeq) compare
Sama_0971 +0.7 5.4 nucleoside transporter (RefSeq) compare
Sama_2778 +0.7 2.5 hypothetical protein (RefSeq) compare
Sama_2690 +0.7 2.0 MarR family transcriptional regulator (RefSeq) compare
Sama_2310 flgJ +0.7 2.7 flagellar rod assembly protein/muramidase FlgJ (RefSeq) compare
Sama_2522 +0.7 4.9 amidase (RefSeq) compare
Sama_1358 +0.7 3.6 pyruvate carboxyltransferase (RefSeq) compare
Sama_0097 tdh +0.7 5.6 L-threonine 3-dehydrogenase (RefSeq) compare
Sama_0794 +0.7 5.5 gamma-glutamyl-gamma-aminobutyrate hydrolase (EC: 3.5.1.94) (from data) compare
Sama_2742 +0.7 3.2 ATP-dependent RNA helicase SrmB (RefSeq) compare
Sama_0056 +0.7 4.8 Rrf2 family protein (RefSeq) compare
Sama_3018 sspA +0.7 3.2 stringent starvation protein A (RefSeq) compare
Sama_1663 +0.7 1.2 glucose/galactose transporter (RefSeq) compare
Sama_2777 +0.7 4.1 aminotransferase, class V (RefSeq) compare
Sama_0586 +0.7 4.1 LysR family transcriptional regulator (RefSeq) compare
Sama_1404 +0.7 2.6 Beta-glucosidase (EC 3.2.1.21) (from data) compare
Sama_3267 +0.7 2.8 TetR family transcriptional regulator (RefSeq) compare
Sama_3335 potE +0.7 5.6 putrescine transporter (RefSeq) compare
Sama_2104 +0.7 2.4 glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq) compare
Sama_1909 +0.7 1.5 glycine cleavage system transcriptional repressor, putative (RefSeq) compare
Sama_0255 +0.7 4.9 acetylornithine deacetylase (RefSeq) compare
Sama_3334 +0.7 5.6 ornithine decarboxylase (RefSeq) compare
Sama_0902 +0.7 2.7 putative Trp operon repressor (RefSeq) compare
Sama_1850 +0.6 3.6 hypothetical protein (RefSeq) compare
Sama_0503 +0.6 2.7 hypothetical protein (RefSeq) compare
Sama_2997 +0.6 1.9 hypothetical protein (RefSeq) compare
Sama_1790 +0.6 2.9 hypothetical protein (RefSeq) compare
Sama_2806 +0.6 2.3 hypothetical protein (RefSeq) compare
Sama_1762 +0.6 2.2 riboflavin synthase subunit alpha (RefSeq) compare
Sama_2406 +0.6 4.7 ATP-dependent protease, putative (RefSeq) compare
Sama_3543 +0.6 5.4 glutathione reductase (RefSeq) compare
Sama_R0027 +0.6 1.1 5S ribosomal RNA (RefSeq) compare
Sama_2612 +0.6 2.4 hypothetical protein (RefSeq) compare
Sama_2063 +0.6 2.7 hypothetical protein (RefSeq) compare
Sama_0506 +0.6 4.6 pseudouridine synthase (RefSeq) compare
Sama_0105 +0.6 4.8 hypothetical protein (RefSeq) compare
Sama_2249 +0.6 1.6 hypothetical protein (RefSeq) compare
Sama_1015 nrdR +0.6 2.0 transcriptional regulator NrdR (RefSeq) compare
Sama_0107 +0.6 4.9 hypothetical protein (RefSeq) compare
Sama_2591 +0.6 1.7 rare lipoprotein A (RefSeq) compare
Sama_0112 +0.6 4.2 glycosyl transferase, group 2 family protein (RefSeq) compare
Sama_0448 +0.6 3.9 malate dehydrogenase (RefSeq) compare
Sama_2328 +0.6 3.7 UDP-N-acetylglucosamine 4,6-dehydratase (RefSeq) compare
Sama_2082 +0.6 3.2 Signal transduction histidine kinase regulating C4-dicarboxylate transport system-like protein (RefSeq) compare
Sama_1906 +0.6 4.1 HlyD family-like protein (RefSeq) compare
Sama_0192 +0.6 3.1 DNA-binding transcriptional repressor FabR (RefSeq) compare
Sama_1345 +0.6 1.3 hypothetical protein (RefSeq) compare
Sama_0098 +0.6 4.4 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Sama_3333 +0.6 1.0 hypothetical protein (RefSeq) compare
Sama_2289 fliN +0.6 2.3 flagellar motor switch protein (RefSeq) compare
Sama_2102 +0.6 1.4 hypothetical protein (RefSeq) compare
Sama_1558 +0.6 2.0 hypothetical protein (RefSeq) compare
Sama_0110 +0.6 2.6 pantetheine-phosphate adenylyltransferase (RefSeq) compare
Sama_0916 +0.5 4.4 sodium:alanine symporter family protein (RefSeq) compare
Sama_2368 +0.5 4.2 hypothetical protein (RefSeq) compare
Sama_0671 +0.5 1.9 arginine repressor (RefSeq) compare
Sama_1536 +0.5 1.9 hypothetical protein (RefSeq) compare
Sama_0106 +0.5 3.8 hypothetical protein (RefSeq) compare
Sama_3532 +0.5 2.5 hypothetical protein (RefSeq) compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source D-Glucosamine Hydrochloride in Shewanella amazonensis SB2B

For nitrogen source D-Glucosamine Hydrochloride across organisms