Experiment set39S433 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS11705		+3.6	3.3	hypothetical protein
BPHYT_RS14140		+3.5	6.7	phosphate transporter permease subunit PstC
BPHYT_RS18655		+2.9	8.1	3-oxoacyl-ACP synthase
BPHYT_RS19570		+2.9	24.4	sodium/hydrogen exchanger
BPHYT_RS06530		+2.8	2.9	membrane protein
BPHYT_RS33820		+2.7	25.3	histidine kinase
BPHYT_RS19565		+2.7	18.6	gamma-glutamyl:cysteine ligase
BPHYT_RS09500		+2.6	15.4	glucose-6-phosphate isomerase
BPHYT_RS30995		+2.5	1.4	glucose-1-phosphate thymidylyltransferase
BPHYT_RS25935		+2.5	1.7	type III secretion protein
BPHYT_RS14855		+2.5	1.2	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS33920		+2.4	18.8	type II citrate synthase
BPHYT_RS06175		+2.4	7.8	LPS biosynthesis
BPHYT_RS04945		+2.4	21.4	membrane protein
BPHYT_RS12845		+2.3	19.0	ATPase
BPHYT_RS05575		+2.2	18.6	Fis family transcriptional regulator
BPHYT_RS09330		+2.2	19.7	phytoene synthase
BPHYT_RS04950		+2.2	17.6	hypothetical protein
BPHYT_RS03455		+2.2	3.5	paraquat-inducible protein A
BPHYT_RS14395		+2.1	10.7	sugar dehydratase
BPHYT_RS08850		+2.1	1.1	transcriptional regulator
BPHYT_RS14400		+2.1	5.5	anti-sigma factor
BPHYT_RS28670		+2.1	3.1	MFS transporter
BPHYT_RS05560		+2.1	15.5	Fis family transcriptional regulator
BPHYT_RS09815		+2.0	2.0	malate synthase
BPHYT_RS05155		+2.0	8.0	acetyltransferase GCN5
BPHYT_RS17095		+2.0	6.8	proline--tRNA ligase
BPHYT_RS05590		+2.0	16.0	trehalose-6-phosphate synthase
BPHYT_RS23910		+1.9	4.6	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS18590		+1.9	1.5	hypothetical protein
BPHYT_RS02905		+1.9	16.7	RNA polymerase subunit sigma-54
BPHYT_RS06075		+1.8	12.6	hypothetical protein
BPHYT_RS26135		+1.8	1.4	ABC transporter permease
BPHYT_RS02865		+1.8	1.4	hypothetical protein
BPHYT_RS05610		+1.8	12.2	DNA-cytosine methyltransferase
BPHYT_RS12725		+1.8	14.8	regulator
BPHYT_RS34185		+1.7	6.0	cold-shock protein
BPHYT_RS09660		+1.7	11.2	trehalose-6-phosphate synthase
BPHYT_RS13645		+1.7	15.3	threonine--tRNA ligase
BPHYT_RS04940		+1.7	2.7	hypothetical protein
BPHYT_RS26025		+1.7	1.1	hypothetical protein
BPHYT_RS29855		+1.7	2.0	protein-tyrosine-phosphatase
BPHYT_RS07255		+1.7	1.9	4-oxalocrotonate decarboxylase
BPHYT_RS31225		+1.7	2.7	D-alanyl-D-alanine dipeptidase
BPHYT_RS25500		+1.6	1.4	hypothetical protein
BPHYT_RS16065		+1.6	1.2	LacI family transcriptional regulator
BPHYT_RS26510		+1.6	1.4	transcriptional regulator
BPHYT_RS11815		+1.6	1.8	alcohol dehydrogenase
BPHYT_RS28595		+1.6	1.7	glyoxalase
BPHYT_RS33615		+1.6	2.8	decarboxylase
BPHYT_RS28860		+1.6	2.0	haloacid dehalogenase
BPHYT_RS02595		+1.6	2.7	sulfurtransferase
BPHYT_RS27370		+1.6	2.9	CoA transferase
BPHYT_RS17100		+1.6	6.7	RNA pyrophosphohydrolase
BPHYT_RS22455		+1.6	1.3	phosphonate ABC transporter substrate-binding protein
BPHYT_RS14145		+1.6	7.3	phosphate ABC transporter substrate-binding protein
BPHYT_RS12465		+1.6	2.5	inositol monophosphatase
BPHYT_RS16335		+1.6	4.4	membrane protein
BPHYT_RS12590		+1.6	2.1	dual-specificity RNA methyltransferase RlmN
BPHYT_RS06985		+1.6	12.4	fumarate hydratase
BPHYT_RS01435		+1.6	14.0	LysR family transcriptional regulator
BPHYT_RS05615		+1.6	1.3	hypothetical protein
BPHYT_RS06195		+1.6	2.1	membrane protein
BPHYT_RS12150		+1.5	10.2	PII uridylyl-transferase
BPHYT_RS03620		+1.5	8.2	poly(A) polymerase
BPHYT_RS12985		+1.5	1.7	amino acid acetyltransferase
BPHYT_RS09390		+1.5	1.9	ABC transporter permease
BPHYT_RS12290		+1.5	2.0	universal stress protein UspA
BPHYT_RS04290		+1.5	0.8	glycosyl transferase family 2
BPHYT_RS15710		+1.5	0.9	ATP-dependent Clp protease ATP-binding protein
BPHYT_RS05320		+1.5	1.7	beta-lactamase
BPHYT_RS13610		+1.4	2.5	MerR family transcriptional regulator
BPHYT_RS08130		+1.4	1.4	transposase
BPHYT_RS02435		+1.4	1.9	hypothetical protein
BPHYT_RS14135		+1.4	4.7	phosphate transporter permease subunit PtsA
BPHYT_RS04285		+1.4	0.7	rhamnosyltransferase
BPHYT_RS10320		+1.4	7.2	hypothetical protein
BPHYT_RS08565		+1.4	0.7	dihydroorotate dehydrogenase
BPHYT_RS32150		+1.4	1.5	hypothetical protein
BPHYT_RS05585		+1.4	5.8	hypothetical protein
BPHYT_RS34495		+1.4	2.6	phenol degradation protein meta
BPHYT_RS13200		+1.4	3.7	molybdopterin binding oxidoreductase
BPHYT_RS16340		+1.4	4.6	succinyl-CoA synthetase subunit alpha
BPHYT_RS33060		+1.4	2.6	hypothetical protein
BPHYT_RS33390		+1.4	2.4	phosphate ABC transporter substrate-binding protein
BPHYT_RS29085		+1.4	1.4	LysR family transcriptional regulator
BPHYT_RS18340		+1.3	1.6	n-acetyl-gamma-glutamyl-phosphate reductase
BPHYT_RS35770		+1.3	1.7	glyoxalase
BPHYT_RS20220		+1.3	1.0	antibiotic synthesis protein MbtH
BPHYT_RS10720		+1.3	1.2	hypothetical protein
BPHYT_RS26390		+1.3	1.2	antibiotic resistance protein
BPHYT_RS16175		+1.3	0.8	hemolysin D
BPHYT_RS06390		+1.3	3.0	ribosome-associated protein IOJAP
BPHYT_RS29720		+1.3	1.5	molybdopterin-guanine dinucleotide biosynthesis protein MobA
BPHYT_RS08945		+1.3	10.1	hypothetical protein
BPHYT_RS07840		+1.3	1.3	muconate cycloisomerase
BPHYT_RS34485		+1.3	2.1	diguanylate phosphodiesterase
BPHYT_RS29110		+1.3	2.6	DNA-directed DNA polymerase
BPHYT_RS16345		+1.3	2.9	succinyl-CoA ligase [ADP-forming] subunit beta
BPHYT_RS09755		+1.3	1.3	glycosyl transferase family 1
BPHYT_RS29175		+1.3	3.0	ABC transporter ATP-binding protein
BPHYT_RS09160		+1.3	4.1	polyhydroxyalkanoate synthesis repressor PhaR
BPHYT_RS09525		+1.2	3.0	toxin HipA
BPHYT_RS28900		+1.2	2.3	2-oxo-hepta-3-ene-1,7-dioic acid hydratase
BPHYT_RS07860		+1.2	1.6	benzoate 1,2-dioxygenase subunit beta
BPHYT_RS14845		+1.2	0.8	cysteine synthase
BPHYT_RS27230		+1.2	1.2	hypothetical protein
BPHYT_RS28350		+1.2	2.6	fatty acid desaturase
BPHYT_RS00690		+1.2	1.0	transcriptional regulator
BPHYT_RS09640		+1.2	5.7	DNAase
BPHYT_RS33515		+1.2	6.3	porin
BPHYT_RS00920		+1.2	2.5	transposase
BPHYT_RS23355		+1.2	2.8	membrane protein
BPHYT_RS03480		+1.2	3.0	ferritin
BPHYT_RS25800		+1.2	1.4	sugar ABC transporter permease
BPHYT_RS02525		+1.2	7.1	membrane protein
BPHYT_RS20970		+1.2	1.4	hypothetical protein
BPHYT_RS22360		+1.2	1.8	response regulator receiver
BPHYT_RS16570		+1.2	1.3	glutathione S-transferase
BPHYT_RS05670		+1.2	1.7	hypothetical protein
BPHYT_RS28065		+1.2	1.4	hypothetical protein
BPHYT_RS23770		+1.2	1.5	GntR family transcriptional regulator
BPHYT_RS01620		+1.2	5.3	sensor histidine kinase
BPHYT_RS21870		+1.2	2.3	hypothetical protein
BPHYT_RS24105		+1.1	2.7	chloroperoxidase
BPHYT_RS21585		+1.1	2.2	short-chain dehydrogenase
BPHYT_RS17035		+1.1	0.7	sugar kinase
BPHYT_RS31615		+1.1	1.1	thiamine pyrophosphate protein
BPHYT_RS08395		+1.1	2.9	DSBA oxidoreductase
BPHYT_RS20055		+1.1	1.1	hypothetical protein
BPHYT_RS15325		+1.1	2.3	ribonuclease PH
BPHYT_RS11825		+1.1	0.9	cytosine deaminase
BPHYT_RS17640		+1.1	0.7	2-alkenal reductase
BPHYT_RS19325		+1.1	1.6	glycine cleavage system H protein
BPHYT_RS19895		+1.1	2.5	rod shape-determining protein RodA
BPHYT_RS26005		+1.1	2.2	MarR family transcriptional regulator
BPHYT_RS00350		+1.1	1.3	hypothetical protein
BPHYT_RS21475		+1.1	1.0	hypothetical protein
BPHYT_RS16675		+1.1	0.9	dihydroorotase
BPHYT_RS13765		+1.1	2.9	LysR family transcriptional regulator
BPHYT_RS30750		+1.1	1.1	GntR family transcriptional regulator
BPHYT_RS11755		+1.1	1.6	spermidine/putrescine ABC transporter substrate-binding protein
BPHYT_RS31060		+1.1	1.1	capsular polysaccharide biosynthesis protein
BPHYT_RS18600		+1.1	1.8	glutathione S-transferase
BPHYT_RS31635		+1.1	1.9	choline dehydrogenase
BPHYT_RS06375		+1.1	2.4	ribonuclease
BPHYT_RS14485		+1.1	4.1	ribonuclease E
BPHYT_RS03625		+1.1	4.6	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS22230		+1.1	1.3	LuxR family transcriptional regulator
BPHYT_RS06610		+1.1	1.2	triosephosphate isomerase
BPHYT_RS03900		+1.1	1.6	phospholipid-binding protein
BPHYT_RS07705		+1.1	2.2	arginine succinyltransferase
BPHYT_RS03725		+1.1	0.5	serine hydroxymethyltransferase
BPHYT_RS11495		+1.0	1.7	membrane protein
BPHYT_RS28830		+1.0	0.8	LysR family transcriptional regulator
BPHYT_RS14195		+1.0	1.0	carbamoyl phosphate synthase small subunit
BPHYT_RS29915		+1.0	1.6	GntR family transcriptional regulator
BPHYT_RS24955		+1.0	1.1	cytochrome C peroxidase
BPHYT_RS35220		+1.0	3.0	extradiol dioxygenase
BPHYT_RS23430		+1.0	1.6	bifunctional D-altronate/D-mannonate dehydratase
BPHYT_RS06470		+1.0	1.3	membrane protein
BPHYT_RS09495		+1.0	2.4	ABC transporter ATP-binding protein
BPHYT_RS22330		+1.0	1.8	PhoB family transcriptional regulator
BPHYT_RS23610		+1.0	2.9	alpha/beta hydrolase
BPHYT_RS35230		+1.0	2.0	type 11 methyltransferase
BPHYT_RS13325		+1.0	1.4	TetR family transcriptional regulator
BPHYT_RS12510		+1.0	0.9	RNA-binding protein
BPHYT_RS13605		+1.0	0.9	tRNA-Pro
BPHYT_RS22835		+1.0	1.0	flagellar motor protein MotA
BPHYT_RS33695		+1.0	1.1	molybdenum ABC transporter ATPase
BPHYT_RS15620		+1.0	1.7	peptidyl-prolyl cis-trans isomerase
BPHYT_RS00770		+1.0	1.5	conjugal transfer protein TraC
BPHYT_RS20880		+1.0	1.2	polyketide cyclase
BPHYT_RS31470		+1.0	2.0	NAD(P)H dehydrogenase (quinone)
BPHYT_RS11360		+1.0	1.5	hypothetical protein
BPHYT_RS24135		+1.0	1.4	alpha-dehydro-beta-deoxy-D-glucarate aldolase
BPHYT_RS31785		+1.0	2.2	hypothetical protein
BPHYT_RS02640		+1.0	6.9	cytochrome C oxidase
BPHYT_RS17545		+1.0	3.9	cold-shock protein
BPHYT_RS02005		+1.0	1.6	diguanylate phosphodiesterase
BPHYT_RS16710		+1.0	0.4	LysR family transcriptional regulator
BPHYT_RS04820		+1.0	2.6	LysR family transcriptional regulator
BPHYT_RS02210		+1.0	2.3	DeoR family transcriptional regulator
BPHYT_RS05895		+1.0	1.2	hypothetical protein
BPHYT_RS28285		+1.0	1.7	MFS transporter
BPHYT_RS01455		+1.0	1.0	peptide deformylase
BPHYT_RS32960		+1.0	2.3	short-chain dehydrogenase
BPHYT_RS02650		+1.0	2.3	membrane protein
BPHYT_RS26930		+1.0	4.8	mechanosensitive ion channel protein
BPHYT_RS01170		+1.0	1.0	hypothetical protein
BPHYT_RS11535		+1.0	1.8	membrane protein
BPHYT_RS03730		+1.0	1.5	transcriptional repressor NrdR
BPHYT_RS20715		+1.0	0.9	peptidase
BPHYT_RS25095		+1.0	0.9	AraC family transcriptional regulator
BPHYT_RS08510		+0.9	1.1	acyl-CoA dehydrogenase
BPHYT_RS14755		+0.9	2.0	tRNA (guanine-N(1)-)-methyltransferase
BPHYT_RS21700		+0.9	0.9	phosphotransacetylase
BPHYT_RS32860		+0.9	0.7	hypothetical protein
BPHYT_RS05330		+0.9	1.8	phosphohydrolase
BPHYT_RS28190		+0.9	1.6	porin

Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments