Experiment set39S405 for Burkholderia phytofirmans PsJN

Compare to:

24hr PHYTO8 MOI 1

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS11705 +3.3 3.0 hypothetical protein compare
BPHYT_RS19565 +2.8 21.6 gamma-glutamyl:cysteine ligase compare
BPHYT_RS33820 +2.8 25.9 histidine kinase compare
BPHYT_RS19570 +2.8 25.6 sodium/hydrogen exchanger compare
BPHYT_RS02595 +2.7 7.7 sulfurtransferase compare
BPHYT_RS14140 +2.5 6.6 phosphate transporter permease subunit PstC compare
BPHYT_RS14400 +2.4 5.4 anti-sigma factor compare
BPHYT_RS06175 +2.4 7.7 LPS biosynthesis compare
BPHYT_RS09330 +2.4 19.6 phytoene synthase compare
BPHYT_RS12985 +2.4 2.3 amino acid acetyltransferase compare
BPHYT_RS33920 +2.3 13.3 type II citrate synthase compare
BPHYT_RS05560 +2.2 11.7 Fis family transcriptional regulator compare
BPHYT_RS05575 +2.1 15.8 Fis family transcriptional regulator compare
BPHYT_RS04945 +2.1 18.1 membrane protein compare
BPHYT_RS12845 +2.1 16.0 ATPase compare
BPHYT_RS04950 +2.0 16.4 hypothetical protein compare
BPHYT_RS03400 +2.0 1.2 ATP-dependent DNA helicase RecG compare
BPHYT_RS25935 +2.0 3.9 type III secretion protein compare
BPHYT_RS05155 +2.0 7.9 acetyltransferase GCN5 compare
BPHYT_RS07840 +1.9 2.5 muconate cycloisomerase compare
BPHYT_RS02905 +1.9 17.7 RNA polymerase subunit sigma-54 compare
BPHYT_RS23910 +1.9 5.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS06985 +1.9 9.3 fumarate hydratase compare
BPHYT_RS06075 +1.8 9.9 hypothetical protein compare
BPHYT_RS13645 +1.8 16.5 threonine--tRNA ligase compare
BPHYT_RS12725 +1.8 14.7 regulator compare
BPHYT_RS05590 +1.8 13.1 trehalose-6-phosphate synthase compare
BPHYT_RS15890 +1.7 1.5 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS12465 +1.7 3.7 inositol monophosphatase compare
BPHYT_RS21330 +1.6 2.4 hypothetical protein compare
BPHYT_RS08945 +1.6 11.2 hypothetical protein compare
BPHYT_RS09660 +1.6 10.4 trehalose-6-phosphate synthase compare
BPHYT_RS28065 +1.6 1.4 hypothetical protein compare
BPHYT_RS28075 +1.6 2.1 cytochrome B561 compare
BPHYT_RS14395 +1.6 6.0 sugar dehydratase compare
BPHYT_RS14485 +1.6 5.4 ribonuclease E compare
BPHYT_RS29855 +1.6 1.7 protein-tyrosine-phosphatase compare
BPHYT_RS32395 +1.5 1.1 hypothetical protein compare
BPHYT_RS25870 +1.5 0.9 type III secretion system ATPase compare
BPHYT_RS11815 +1.5 1.7 alcohol dehydrogenase compare
BPHYT_RS09500 +1.5 6.7 glucose-6-phosphate isomerase compare
BPHYT_RS19920 +1.5 2.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06530 +1.5 1.6 membrane protein compare
BPHYT_RS35770 +1.5 1.8 glyoxalase compare
BPHYT_RS08235 +1.4 0.6 nucleoprotein, Hfg, host factor I compare
BPHYT_RS18655 +1.4 5.9 3-oxoacyl-ACP synthase compare
BPHYT_RS13200 +1.4 3.0 molybdopterin binding oxidoreductase compare
BPHYT_RS16335 +1.4 3.5 membrane protein compare
BPHYT_RS12150 +1.4 10.0 PII uridylyl-transferase compare
BPHYT_RS10135 +1.4 1.1 hypothetical protein compare
BPHYT_RS05025 +1.4 1.7 sugar ABC transporter substrate-binding protein compare
BPHYT_RS16175 +1.3 0.8 hemolysin D compare
BPHYT_RS15285 +1.3 3.7 transcription elongation factor GreB compare
BPHYT_RS09645 +1.3 2.4 ankyrin compare
BPHYT_RS04455 +1.3 0.8 glycosyl transferase compare
BPHYT_RS09815 +1.3 1.9 malate synthase compare
BPHYT_RS16345 +1.3 3.9 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS23355 +1.3 2.1 membrane protein compare
BPHYT_RS15325 +1.3 3.7 ribonuclease PH compare
BPHYT_RS02765 +1.3 1.4 cytochrome BD oxidase subunit I compare
BPHYT_RS14145 +1.3 6.7 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS04940 +1.3 1.9 hypothetical protein compare
BPHYT_RS26570 +1.3 1.2 5'-nucleotidase compare
BPHYT_RS09390 +1.2 1.6 ABC transporter permease compare
BPHYT_RS06375 +1.2 2.3 ribonuclease compare
BPHYT_RS09160 +1.2 4.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS08765 +1.2 1.0 ABC transporter ATP-binding protein compare
BPHYT_RS28995 +1.2 2.3 histidine kinase compare
BPHYT_RS31320 +1.2 2.6 hypothetical protein compare
BPHYT_RS08645 +1.2 1.6 sulfonate ABC transporter compare
BPHYT_RS06390 +1.2 2.5 ribosome-associated protein IOJAP compare
BPHYT_RS17095 +1.2 2.6 proline--tRNA ligase compare
BPHYT_RS21055 +1.2 1.9 S-formylglutathione hydrolase compare
BPHYT_RS11745 +1.2 1.0 (2Fe-2S)-binding protein compare
BPHYT_RS23280 +1.2 2.4 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS34490 +1.2 1.2 hypothetical protein compare
BPHYT_RS30750 +1.2 1.0 GntR family transcriptional regulator compare
BPHYT_RS08705 +1.2 3.3 hypothetical protein compare
BPHYT_RS28030 +1.2 2.4 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS10320 +1.2 3.3 hypothetical protein compare
BPHYT_RS06070 +1.2 5.8 cytochrome C compare
BPHYT_RS02640 +1.2 8.5 cytochrome C oxidase compare
BPHYT_RS28985 +1.2 4.1 hypothetical protein compare
BPHYT_RS05615 +1.1 1.0 hypothetical protein compare
BPHYT_RS29235 +1.1 1.3 cell shape determination protein CcmA compare
BPHYT_RS08135 +1.1 1.3 hypothetical protein compare
BPHYT_RS07900 +1.1 1.3 hypothetical protein compare
BPHYT_RS08405 +1.1 1.6 hypothetical protein compare
BPHYT_RS08000 +1.1 2.6 antibiotic biosynthesis monooxygenase compare
BPHYT_RS19325 +1.1 1.6 glycine cleavage system H protein compare
BPHYT_RS18255 +1.1 1.9 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS03620 +1.1 5.7 poly(A) polymerase compare
BPHYT_RS04290 +1.1 0.8 glycosyl transferase family 2 compare
BPHYT_RS06065 +1.1 6.3 cytochrome C compare
BPHYT_RS24255 +1.1 3.2 hypothetical protein compare
BPHYT_RS08850 +1.1 0.5 transcriptional regulator compare
BPHYT_RS25980 +1.1 1.1 urea carboxylase compare
BPHYT_RS15620 +1.1 2.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS08510 +1.1 1.4 acyl-CoA dehydrogenase compare
BPHYT_RS06350 +1.1 0.8 chemotaxis protein CheY compare
BPHYT_RS11540 +1.1 2.2 ureidoglycolate hydrolase compare
BPHYT_RS05610 +1.1 6.1 DNA-cytosine methyltransferase compare
BPHYT_RS08385 +1.1 1.2 secretion protein compare
BPHYT_RS30610 +1.1 2.1 major facilitator transporter compare
BPHYT_RS36480 +1.1 1.6 hypothetical protein compare
BPHYT_RS16340 +1.1 4.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS20085 +1.1 1.7 mannosyltransferase compare
BPHYT_RS02710 +1.1 1.4 hypothetical protein compare
BPHYT_RS02540 +1.1 2.1 hypothetical protein compare
BPHYT_RS34185 +1.1 5.6 cold-shock protein compare
BPHYT_RS30085 +1.0 1.2 hypothetical protein compare
BPHYT_RS04990 +1.0 1.3 hypothetical protein compare
BPHYT_RS10435 +1.0 1.8 ThiJ/PfpI domain-containing protein compare
BPHYT_RS17640 +1.0 0.9 2-alkenal reductase compare
BPHYT_RS11125 +1.0 1.1 alkylhydroperoxidase compare
BPHYT_RS06500 +1.0 2.2 LOG family protein compare
BPHYT_RS20185 +1.0 1.6 sugar transferase compare
BPHYT_RS09590 +1.0 2.0 thioesterase compare
BPHYT_RS27295 +1.0 1.4 hypothetical protein compare
BPHYT_RS28930 +1.0 1.2 chromosome partitioning protein ParA compare
BPHYT_RS19130 +1.0 1.6 acetyltransferase compare
BPHYT_RS20880 +1.0 1.2 polyketide cyclase compare
BPHYT_RS34530 +1.0 1.9 LysR family transcriptional regulator compare
BPHYT_RS09650 +1.0 0.8 hypothetical protein compare
BPHYT_RS32240 +1.0 1.1 chromosome replication initiation inhibitor protein compare
BPHYT_RS02760 +1.0 1.0 cytochrome BD oxidase subunit II compare
BPHYT_RS04500 +1.0 1.6 urease accessory protein UreF compare
BPHYT_RS31615 +1.0 1.2 thiamine pyrophosphate protein compare
BPHYT_RS26930 +1.0 4.2 mechanosensitive ion channel protein compare
BPHYT_RS10995 +1.0 1.7 GntR family transcriptional regulator compare
BPHYT_RS06725 +1.0 1.6 MaoC family dehydratase compare
BPHYT_RS35500 +1.0 2.4 major facilitator transporter compare
BPHYT_RS29250 +1.0 2.5 dihydrodipicolinate synthase compare
BPHYT_RS05670 +1.0 1.8 hypothetical protein compare
BPHYT_RS06710 +1.0 1.0 hypothetical protein compare
BPHYT_RS33885 +1.0 7.4 tRNA pseudouridine synthase A compare
BPHYT_RS02530 +1.0 5.5 hypothetical protein compare
BPHYT_RS02525 +1.0 4.5 membrane protein compare
BPHYT_RS35310 +1.0 1.0 GCN5 family N-acetyltransferase compare
BPHYT_RS33695 +1.0 1.9 molybdenum ABC transporter ATPase compare
BPHYT_RS10865 +1.0 2.7 transporter compare
BPHYT_RS23390 +1.0 1.8 hypothetical protein compare
BPHYT_RS11310 +1.0 1.4 LysR family transcriptional regulator compare
BPHYT_RS14135 +1.0 5.9 phosphate transporter permease subunit PtsA compare
BPHYT_RS36150 +1.0 2.4 hypothetical protein compare
BPHYT_RS03625 +1.0 5.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS10535 +1.0 3.6 DSBA oxidoreductase compare
BPHYT_RS15865 +1.0 1.6 exodeoxyribonuclease VII large subunit compare
BPHYT_RS25140 +1.0 2.0 hypothetical protein compare
BPHYT_RS23035 +0.9 1.1 hypothetical protein compare
BPHYT_RS08565 +0.9 0.5 dihydroorotate dehydrogenase compare
BPHYT_RS17440 +0.9 2.2 hypothetical protein compare
BPHYT_RS15800 +0.9 2.8 GntR family transcriptional regulator compare
BPHYT_RS07570 +0.9 0.9 hypothetical protein compare
BPHYT_RS31910 +0.9 1.2 hypothetical protein compare
BPHYT_RS14275 +0.9 1.5 hypothetical protein compare
BPHYT_RS36570 +0.9 1.5 histone compare
BPHYT_RS30995 +0.9 0.4 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS09640 +0.9 4.1 DNAase compare
BPHYT_RS20130 +0.9 2.2 diguanylate phosphodiesterase compare
BPHYT_RS22910 +0.9 0.4 hypothetical protein compare
BPHYT_RS09145 +0.9 6.1 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS16060 +0.9 2.3 ribonucleotide-diphosphate reductase subunit alpha compare
BPHYT_RS13170 +0.9 2.6 ATPase compare
BPHYT_RS10945 +0.9 1.0 2-deoxy-D-gluconate 3-dehydrogenase compare
BPHYT_RS36230 +0.9 0.8 hypothetical protein compare
BPHYT_RS02010 +0.9 2.0 copper homeostasis protein CutC compare
BPHYT_RS02005 +0.9 1.5 diguanylate phosphodiesterase compare
BPHYT_RS11455 +0.9 3.1 manganese transporter compare
BPHYT_RS30820 +0.9 2.2 GntR family transcriptional regulator compare
BPHYT_RS04140 +0.9 3.4 polysaccharide biosynthesis protein compare
BPHYT_RS02600 +0.9 1.1 glutaredoxin compare
BPHYT_RS06910 +0.9 1.7 membrane protein compare
BPHYT_RS30285 +0.9 1.6 succinate-semialdehyde dehydrogenase compare
BPHYT_RS02635 +0.9 5.5 membrane protein compare
BPHYT_RS36000 +0.9 1.1 hypothetical protein compare
BPHYT_RS05905 +0.9 1.1 hypothetical protein compare
BPHYT_RS03460 +0.9 4.2 mammalian cell entry protein compare
BPHYT_RS26780 +0.9 3.0 chemotaxis protein CheR compare
BPHYT_RS26040 +0.9 1.8 cysteine hydrolase compare
BPHYT_RS31225 +0.9 1.9 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS30825 +0.9 1.4 extradiol dioxygenase compare
BPHYT_RS28670 +0.9 1.0 MFS transporter compare
BPHYT_RS12635 +0.9 2.6 translation factor Sua5 compare
BPHYT_RS03725 +0.9 0.6 serine hydroxymethyltransferase compare
BPHYT_RS21160 +0.9 2.5 NAD(P) transhydrogenase subunit beta compare
BPHYT_RS22580 +0.9 3.7 transcriptional regulator compare
BPHYT_RS23455 +0.9 1.0 phosphorylase compare
BPHYT_RS16840 +0.9 1.7 transketolase compare
BPHYT_RS07925 +0.9 1.8 glutamine amidotransferase compare
BPHYT_RS02660 +0.8 1.3 membrane protein compare
BPHYT_RS03665 +0.8 2.0 hypothetical protein compare
BPHYT_RS11080 +0.8 2.2 hypothetical protein compare
BPHYT_RS05010 +0.8 2.4 RpiR family transcriptional regulator compare
BPHYT_RS26005 +0.8 1.7 MarR family transcriptional regulator compare
BPHYT_RS16435 +0.8 6.4 alcohol dehydrogenase compare
BPHYT_RS23155 +0.8 1.2 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS35550 +0.8 1.3 nitrile hydratase compare
BPHYT_RS24040 +0.8 1.8 amino acid ABC transporter compare
BPHYT_RS14855 +0.8 0.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments