Experiment set39S397 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS06175		+3.8	11.9	LPS biosynthesis
BPHYT_RS06530		+3.4	3.6	membrane protein
BPHYT_RS18655		+3.2	17.9	3-oxoacyl-ACP synthase
BPHYT_RS09500		+3.2	14.0	glucose-6-phosphate isomerase
BPHYT_RS33920		+2.8	18.7	type II citrate synthase
BPHYT_RS06375		+2.7	7.3	ribonuclease
BPHYT_RS12845		+2.6	20.9	ATPase
BPHYT_RS14400		+2.5	6.7	anti-sigma factor
BPHYT_RS19565		+2.5	19.3	gamma-glutamyl:cysteine ligase
BPHYT_RS33515		+2.4	14.6	porin
BPHYT_RS01435		+2.3	20.7	LysR family transcriptional regulator
BPHYT_RS16175		+2.2	1.3	hemolysin D
BPHYT_RS19570		+2.2	18.3	sodium/hydrogen exchanger
BPHYT_RS04945		+2.1	19.2	membrane protein
BPHYT_RS06190		+2.1	2.1	heptosyltransferase
BPHYT_RS13200		+2.1	4.9	molybdopterin binding oxidoreductase
BPHYT_RS05190		+2.1	9.0	ADP-heptose--LPS heptosyltransferase
BPHYT_RS14140		+2.1	5.3	phosphate transporter permease subunit PstC
BPHYT_RS14755		+2.1	4.6	tRNA (guanine-N(1)-)-methyltransferase
BPHYT_RS29085		+2.1	2.5	LysR family transcriptional regulator
BPHYT_RS08235		+2.0	1.0	nucleoprotein, Hfg, host factor I
BPHYT_RS31225		+2.0	3.1	D-alanyl-D-alanine dipeptidase
BPHYT_RS04950		+1.9	16.1	hypothetical protein
BPHYT_RS11705		+1.9	2.1	hypothetical protein
BPHYT_RS23910		+1.9	6.1	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS07255		+1.9	1.9	4-oxalocrotonate decarboxylase
BPHYT_RS08850		+1.8	0.9	transcriptional regulator
BPHYT_RS05290		+1.8	1.9	hypothetical protein
BPHYT_RS18415		+1.8	6.8	hypothetical protein
BPHYT_RS25870		+1.8	1.1	type III secretion system ATPase
BPHYT_RS04300		+1.8	10.6	family 2 glycosyl transferase
BPHYT_RS04290		+1.7	1.3	glycosyl transferase family 2
BPHYT_RS15325		+1.7	4.1	ribonuclease PH
BPHYT_RS25935		+1.7	1.8	type III secretion protein
BPHYT_RS12985		+1.7	1.4	amino acid acetyltransferase
BPHYT_RS05155		+1.7	9.3	acetyltransferase GCN5
BPHYT_RS01455		+1.7	2.2	peptide deformylase
BPHYT_RS08960		+1.7	1.1	threonine synthase
BPHYT_RS12590		+1.7	2.5	dual-specificity RNA methyltransferase RlmN
BPHYT_RS17905		+1.6	2.5	fimbrial assembly family protein
BPHYT_RS05610		+1.6	10.4	DNA-cytosine methyltransferase
BPHYT_RS12725		+1.6	13.0	regulator
BPHYT_RS25370		+1.6	1.8	acyl-CoA dehydrogenase
BPHYT_RS14395		+1.6	7.0	sugar dehydratase
BPHYT_RS30450		+1.6	1.4	ABC transporter permease
BPHYT_RS17095		+1.6	6.2	proline--tRNA ligase
BPHYT_RS09330		+1.6	12.3	phytoene synthase
BPHYT_RS06455		+1.6	2.1	potassium-transporting ATPase C chain
BPHYT_RS16590		+1.6	8.4	Fis family transcriptional regulator
BPHYT_RS03645		+1.5	2.5	tRNA dimethylallyltransferase
BPHYT_RS04370		+1.5	1.1	glycosyl transferase
BPHYT_RS20055		+1.5	1.6	hypothetical protein
BPHYT_RS32200		+1.5	1.6	lytic transglycosylase
BPHYT_RS06985		+1.5	9.2	fumarate hydratase
BPHYT_RS16710		+1.5	0.7	LysR family transcriptional regulator
BPHYT_RS15710		+1.5	0.7	ATP-dependent Clp protease ATP-binding protein
BPHYT_RS14855		+1.4	0.7	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS04315		+1.4	6.3	UDP-N-acetylglucosamine 2-epimerase
BPHYT_RS14845		+1.4	0.8	cysteine synthase
BPHYT_RS05010		+1.4	4.0	RpiR family transcriptional regulator
BPHYT_RS23230		+1.4	1.4	histidine kinase
BPHYT_RS06325		+1.4	4.0	ATPase
BPHYT_RS09390		+1.4	3.6	ABC transporter permease
BPHYT_RS04385		+1.3	2.5	nucleoside-diphosphate sugar oxidoreductase
BPHYT_RS17640		+1.3	0.8	2-alkenal reductase
BPHYT_RS33965		+1.3	2.7	methylcitrate synthase
BPHYT_RS12150		+1.3	9.3	PII uridylyl-transferase
BPHYT_RS08905		+1.3	2.8	peroxiredoxin
BPHYT_RS35400		+1.3	2.3	ABC transporter
BPHYT_RS32395		+1.3	0.9	hypothetical protein
BPHYT_RS15620		+1.3	3.1	peptidyl-prolyl cis-trans isomerase
BPHYT_RS24135		+1.3	1.5	alpha-dehydro-beta-deoxy-D-glucarate aldolase
BPHYT_RS23475		+1.3	1.4	luciferase
BPHYT_RS21625		+1.3	1.2	LysR family transcriptional regulator
BPHYT_RS07540		+1.3	1.0	hypothetical protein
BPHYT_RS03625		+1.3	8.2	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS17100		+1.3	4.7	RNA pyrophosphohydrolase
BPHYT_RS25780		+1.2	0.5	DeoR faimly transcriptional regulator
BPHYT_RS04965		+1.2	7.5	ATP-binding protein
BPHYT_RS30830		+1.2	1.9	MFS transporter
BPHYT_RS25210		+1.2	1.5	drug:proton antiporter
BPHYT_RS01230		+1.2	4.3	DNA-binding protein
BPHYT_RS06075		+1.2	6.4	hypothetical protein
BPHYT_RS03665		+1.2	3.9	hypothetical protein
BPHYT_RS03620		+1.2	6.4	poly(A) polymerase
BPHYT_RS04940		+1.2	2.2	hypothetical protein
BPHYT_RS26775		+1.2	1.6	chemotaxis protein CheB
BPHYT_RS22940		+1.2	1.1	pilus assembly protein TadE
BPHYT_RS02540		+1.2	2.5	hypothetical protein
BPHYT_RS33220		+1.2	4.4	group 1 glycosyl transferase
BPHYT_RS28305		+1.2	1.4	protein tyrosine phosphatase
BPHYT_RS07705		+1.2	2.4	arginine succinyltransferase
BPHYT_RS33820		+1.2	10.3	histidine kinase
BPHYT_RS36470		+1.2	1.2	hypothetical protein
BPHYT_RS23390		+1.2	1.7	hypothetical protein
BPHYT_RS16840		+1.2	2.2	transketolase
BPHYT_RS05650		+1.2	0.9	hypothetical protein
BPHYT_RS17240		+1.2	0.7	cell division protein FtsW
BPHYT_RS00295		+1.2	3.1	hypothetical protein
BPHYT_RS23705		+1.2	6.6	hypothetical protein
BPHYT_RS29045		+1.1	1.7	cytochrome B561
BPHYT_RS22835		+1.1	1.3	flagellar motor protein MotA
BPHYT_RS10115		+1.1	1.4	hypothetical protein
BPHYT_RS04820		+1.1	3.0	LysR family transcriptional regulator
BPHYT_RS21495		+1.1	1.5	ABC transporter
BPHYT_RS14195		+1.1	1.8	carbamoyl phosphate synthase small subunit
BPHYT_RS28000		+1.1	1.9	permease
BPHYT_RS04340		+1.1	2.1	hypothetical protein
BPHYT_RS25770		+1.1	1.4	hypothetical protein
BPHYT_RS24745		+1.1	2.2	transcriptional regulator
BPHYT_RS02660		+1.1	1.8	membrane protein
BPHYT_RS17525		+1.1	1.2	glutaredoxin
BPHYT_RS26770		+1.1	1.6	histidine kinase
BPHYT_RS23650		+1.1	0.8	hypothetical protein
BPHYT_RS08455		+1.1	5.5	ribonuclease R
BPHYT_RS28850		+1.1	1.9	hypothetical protein
BPHYT_RS11400		+1.1	1.6	hypothetical protein
BPHYT_RS26555		+1.1	2.1	multidrug MFS transporter
BPHYT_RS17705		+1.1	6.7	histidinol-phosphate aminotransferase
BPHYT_RS14145		+1.1	5.9	phosphate ABC transporter substrate-binding protein
BPHYT_RS03875		+1.1	1.7	dehydrogenase
BPHYT_RS06535		+1.1	2.5	membrane protein
BPHYT_RS25500		+1.0	1.3	hypothetical protein
BPHYT_RS20280		+1.0	1.5	hypothetical protein
BPHYT_RS13645		+1.0	9.0	threonine--tRNA ligase
BPHYT_RS13390		+1.0	0.9	IclR family transcriptional regulator
BPHYT_RS22540		+1.0	1.8	metal ABC transporter permease
BPHYT_RS11535		+1.0	2.3	membrane protein
BPHYT_RS33215		+1.0	2.2	glycosyltransferase
BPHYT_RS31400		+1.0	0.8	methyl-accepting chemotaxis protein
BPHYT_RS12380		+1.0	2.1	ABC transporter permease
BPHYT_RS28620		+1.0	1.6	enoyl-CoA hydratase
BPHYT_RS15490		+1.0	2.9	coproporphyrinogen III oxidase
BPHYT_RS28595		+1.0	1.3	glyoxalase
BPHYT_RS09310		+1.0	3.5	sensor histidine kinase
BPHYT_RS09160		+1.0	3.3	polyhydroxyalkanoate synthesis repressor PhaR
BPHYT_RS28100		+1.0	2.6	hypothetical protein
BPHYT_RS31510		+1.0	3.3	sulfonate ABC transporter substrate-binding protein
BPHYT_RS34185		+1.0	5.4	cold-shock protein
BPHYT_RS08945		+1.0	5.7	hypothetical protein
BPHYT_RS22360		+1.0	1.5	response regulator receiver
BPHYT_RS10320		+1.0	2.6	hypothetical protein
BPHYT_RS14210		+1.0	2.2	hydroxyacylglutathione hydrolase
BPHYT_RS11745		+1.0	0.8	(2Fe-2S)-binding protein
BPHYT_RS09620		+1.0	1.0	aminodeoxychorismate lyase
BPHYT_RS17035		+1.0	0.9	sugar kinase
BPHYT_RS08405		+1.0	1.4	hypothetical protein
BPHYT_RS06195		+1.0	1.3	membrane protein
BPHYT_RS14380		+1.0	2.6	elongation factor 4
BPHYT_RS33375		+1.0	1.5	membrane protein
BPHYT_RS11795		+1.0	0.8	membrane protein
BPHYT_RS06685		+1.0	2.2	NADH:ubiquinone oxidoreductase subunit M
BPHYT_RS04595		+0.9	1.2	cytoplasmic protein
BPHYT_RS10165		+0.9	0.9	transcriptional regulator
BPHYT_RS21855		+0.9	2.4	hypothetical protein
BPHYT_RS31050		+0.9	0.8	epimerase
BPHYT_RS16345		+0.9	2.1	succinyl-CoA ligase [ADP-forming] subunit beta
BPHYT_RS07090		+0.9	1.6	hypothetical protein
BPHYT_RS09640		+0.9	4.4	DNAase
BPHYT_RS28705		+0.9	1.2	IclR family transcriptional regulator
BPHYT_RS02865		+0.9	0.6	hypothetical protein
BPHYT_RS02135		+0.9	1.6	glyoxylate reductase
BPHYT_RS09695		+0.9	1.0	hypothetical protein
BPHYT_RS11080		+0.9	2.2	hypothetical protein
BPHYT_RS32150		+0.9	1.2	hypothetical protein
BPHYT_RS25250		+0.9	1.3	porin
BPHYT_RS31890		+0.9	1.4	transposase
BPHYT_RS23990		+0.9	0.8	N-hydroxyarylamine O-acetyltransferase
BPHYT_RS32900		+0.9	2.9	MFS transporter
BPHYT_RS21055		+0.9	2.4	S-formylglutathione hydrolase
BPHYT_RS32735		+0.9	2.1	hypothetical protein
BPHYT_RS30795		+0.9	1.1	short-chain dehydrogenase
BPHYT_RS12635		+0.9	2.9	translation factor Sua5
BPHYT_RS06765		+0.9	3.0	glutathione S-transferase
BPHYT_RS04630		+0.9	1.3	amino acid ABC transporter permease
BPHYT_RS23880		+0.9	1.4	sugar ABC transporter permease
BPHYT_RS36010		+0.9	3.1	hypothetical protein
BPHYT_RS11155		+0.9	1.0	hypothetical protein
BPHYT_RS26285		+0.9	1.7	glycogen debranching protein
BPHYT_RS35215		+0.9	1.2	dehydrogenase
BPHYT_RS02525		+0.9	4.6	membrane protein
BPHYT_RS25955		+0.9	1.1	transcriptional regulator
BPHYT_RS26415		+0.9	1.6	glutathione S-transferase
BPHYT_RS27720		+0.9	1.3	hypothetical protein
BPHYT_RS13420		+0.9	1.4	hypothetical protein
BPHYT_RS34240		+0.9	1.6	ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data)
BPHYT_RS31840		+0.9	1.1	anhydrase
BPHYT_RS13325		+0.9	1.1	TetR family transcriptional regulator
BPHYT_RS27505		+0.9	1.6	hypothetical protein
BPHYT_RS14485		+0.9	2.0	ribonuclease E
BPHYT_RS28505		+0.9	0.9	5-deoxyglucuronate isomerase
BPHYT_RS26355		+0.9	0.8	hypothetical protein
BPHYT_RS22580		+0.9	2.2	transcriptional regulator
BPHYT_RS05560		+0.9	4.4	Fis family transcriptional regulator
BPHYT_RS29155		+0.9	3.2	hypothetical protein
BPHYT_RS08250		+0.9	1.7	hypothetical protein
BPHYT_RS36250		+0.9	1.9	hypothetical protein
BPHYT_RS12325		+0.9	1.7	GNAT family acetyltransferase
BPHYT_RS36180		+0.9	3.2	hypothetical protein
BPHYT_RS29835		+0.9	2.0	glycosyltransferase

Specific Phenotypes

For 2 genes in this experiment