Experiment set39S388 for Burkholderia phytofirmans PsJN

Compare to:

24hr Phyto Lib only

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS19570 +2.8 25.4 sodium/hydrogen exchanger compare
BPHYT_RS19565 +2.8 22.6 gamma-glutamyl:cysteine ligase compare
BPHYT_RS11705 +2.8 3.5 hypothetical protein compare
BPHYT_RS33820 +2.5 23.7 histidine kinase compare
BPHYT_RS06530 +2.2 2.3 membrane protein compare
BPHYT_RS04945 +2.1 18.8 membrane protein compare
BPHYT_RS02905 +2.0 19.1 RNA polymerase subunit sigma-54 compare
BPHYT_RS09330 +2.0 16.8 phytoene synthase compare
BPHYT_RS12985 +1.9 1.6 amino acid acetyltransferase compare
BPHYT_RS05575 +1.9 16.6 Fis family transcriptional regulator compare
BPHYT_RS04950 +1.9 16.5 hypothetical protein compare
BPHYT_RS23910 +1.9 8.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS25500 +1.9 2.3 hypothetical protein compare
BPHYT_RS14140 +1.9 4.3 phosphate transporter permease subunit PstC compare
BPHYT_RS02595 +1.8 4.0 sulfurtransferase compare
BPHYT_RS05560 +1.8 11.9 Fis family transcriptional regulator compare
BPHYT_RS14855 +1.8 1.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06075 +1.8 9.4 hypothetical protein compare
BPHYT_RS05590 +1.8 13.4 trehalose-6-phosphate synthase compare
BPHYT_RS15890 +1.7 1.7 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS33920 +1.7 10.8 type II citrate synthase compare
BPHYT_RS14400 +1.7 2.6 anti-sigma factor compare
BPHYT_RS34410 +1.6 2.6 hypothetical protein compare
BPHYT_RS18655 +1.6 8.0 3-oxoacyl-ACP synthase compare
BPHYT_RS11795 +1.6 1.7 membrane protein compare
BPHYT_RS31060 +1.6 1.5 capsular polysaccharide biosynthesis protein compare
BPHYT_RS12725 +1.6 13.7 regulator compare
BPHYT_RS04940 +1.6 3.0 hypothetical protein compare
BPHYT_RS04965 +1.5 8.3 ATP-binding protein compare
BPHYT_RS14485 +1.5 3.8 ribonuclease E compare
BPHYT_RS10065 +1.5 1.8 cytochrome C oxidase subunit I compare
BPHYT_RS14395 +1.5 8.1 sugar dehydratase compare
BPHYT_RS13645 +1.5 13.4 threonine--tRNA ligase compare
BPHYT_RS35215 +1.5 2.4 dehydrogenase compare
BPHYT_RS12845 +1.5 12.8 ATPase compare
BPHYT_RS25335 +1.5 1.0 hypothetical protein compare
BPHYT_RS30750 +1.4 1.6 GntR family transcriptional regulator compare
BPHYT_RS34295 +1.4 1.9 fimbrial protein compare
BPHYT_RS06175 +1.4 3.4 LPS biosynthesis compare
BPHYT_RS26560 +1.4 2.5 murein hydrolase transporter LrgA compare
BPHYT_RS32260 +1.4 1.5 hypothetical protein compare
BPHYT_RS16335 +1.4 3.8 membrane protein compare
BPHYT_RS05155 +1.4 8.0 acetyltransferase GCN5 compare
BPHYT_RS09660 +1.4 8.7 trehalose-6-phosphate synthase compare
BPHYT_RS13470 +1.4 1.1 arylsulfate sulfotransferase compare
BPHYT_RS13200 +1.3 3.2 molybdopterin binding oxidoreductase compare
BPHYT_RS10040 +1.3 1.7 hypothetical protein compare
BPHYT_RS07840 +1.3 1.3 muconate cycloisomerase compare
BPHYT_RS28765 +1.3 4.5 fumarylacetoacetate hydrolase compare
BPHYT_RS28485 +1.3 1.0 GntR family transcriptional regulator compare
BPHYT_RS29620 +1.3 1.2 hypothetical protein compare
BPHYT_RS09500 +1.3 4.8 glucose-6-phosphate isomerase compare
BPHYT_RS25935 +1.3 3.0 type III secretion protein compare
BPHYT_RS09815 +1.3 1.6 malate synthase compare
BPHYT_RS26025 +1.3 1.1 hypothetical protein compare
BPHYT_RS26770 +1.3 2.1 histidine kinase compare
BPHYT_RS17095 +1.3 4.0 proline--tRNA ligase compare
BPHYT_RS09645 +1.3 2.3 ankyrin compare
BPHYT_RS17100 +1.2 4.2 RNA pyrophosphohydrolase compare
BPHYT_RS24665 +1.2 3.0 ABC transporter permease compare
BPHYT_RS09980 +1.2 1.2 TetR family transcriptional regulator compare
BPHYT_RS08945 +1.2 8.4 hypothetical protein compare
BPHYT_RS16710 +1.2 0.6 LysR family transcriptional regulator compare
BPHYT_RS06985 +1.2 5.5 fumarate hydratase compare
BPHYT_RS06070 +1.2 6.4 cytochrome C compare
BPHYT_RS16175 +1.2 0.7 hemolysin D compare
BPHYT_RS02540 +1.2 2.6 hypothetical protein compare
BPHYT_RS17920 +1.2 1.7 protein CyaY compare
BPHYT_RS15325 +1.2 2.9 ribonuclease PH compare
BPHYT_RS12150 +1.1 9.4 PII uridylyl-transferase compare
BPHYT_RS07705 +1.1 2.9 arginine succinyltransferase compare
BPHYT_RS35205 +1.1 3.1 hypothetical protein compare
BPHYT_RS26775 +1.1 1.5 chemotaxis protein CheB compare
BPHYT_RS21330 +1.1 1.4 hypothetical protein compare
BPHYT_RS03945 +1.1 2.4 hypothetical protein compare
BPHYT_RS28930 +1.1 1.5 chromosome partitioning protein ParA compare
BPHYT_RS14145 +1.1 7.1 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS09445 +1.1 3.0 trigger factor compare
BPHYT_RS09905 +1.1 1.1 hypothetical protein compare
BPHYT_RS25870 +1.1 0.6 type III secretion system ATPase compare
BPHYT_RS14135 +1.1 4.2 phosphate transporter permease subunit PtsA compare
BPHYT_RS31615 +1.1 1.4 thiamine pyrophosphate protein compare
BPHYT_RS16665 +1.1 2.4 peroxiredoxin compare
BPHYT_RS27175 +1.1 1.2 DNA-binding protein compare
BPHYT_RS05610 +1.1 7.7 DNA-cytosine methyltransferase compare
BPHYT_RS12465 +1.1 2.0 inositol monophosphatase compare
BPHYT_RS02005 +1.1 1.9 diguanylate phosphodiesterase compare
BPHYT_RS21460 +1.1 1.1 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS02640 +1.0 7.4 cytochrome C oxidase compare
BPHYT_RS07255 +1.0 2.2 4-oxalocrotonate decarboxylase compare
BPHYT_RS25875 +1.0 0.9 type III secretion protein compare
BPHYT_RS05585 +1.0 4.1 hypothetical protein compare
BPHYT_RS28370 +1.0 1.6 peroxidase compare
BPHYT_RS01455 +1.0 1.2 peptide deformylase compare
BPHYT_RS15320 +1.0 2.0 hypothetical protein compare
BPHYT_RS30085 +1.0 1.3 hypothetical protein compare
BPHYT_RS10710 +1.0 1.8 sensor histidine kinase compare
BPHYT_RS11815 +1.0 1.2 alcohol dehydrogenase compare
BPHYT_RS03620 +1.0 6.4 poly(A) polymerase compare
BPHYT_RS27410 +1.0 1.4 amidohydrolase compare
BPHYT_RS35165 +1.0 2.3 peptidase compare
BPHYT_RS22330 +1.0 3.4 PhoB family transcriptional regulator compare
BPHYT_RS06910 +1.0 2.4 membrane protein compare
BPHYT_RS22835 +1.0 1.3 flagellar motor protein MotA compare
BPHYT_RS23280 +1.0 2.2 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS12635 +1.0 3.7 translation factor Sua5 compare
BPHYT_RS05615 +1.0 0.9 hypothetical protein compare
BPHYT_RS09565 +1.0 1.6 acetyl-CoA acetyltransferase compare
BPHYT_RS05290 +1.0 1.0 hypothetical protein compare
BPHYT_RS22870 +1.0 1.2 copper transporter compare
BPHYT_RS35750 +1.0 1.4 hypothetical protein compare
BPHYT_RS27720 +1.0 1.5 hypothetical protein compare
BPHYT_RS04985 +1.0 2.4 hypothetical protein compare
BPHYT_RS30505 +1.0 1.7 ABC transporter permease compare
BPHYT_RS22930 +0.9 0.8 type II secretion system protein compare
BPHYT_RS28075 +0.9 1.2 cytochrome B561 compare
BPHYT_RS10320 +0.9 2.2 hypothetical protein compare
BPHYT_RS02755 +0.9 1.4 cyd operon protein YbgT compare
BPHYT_RS20505 +0.9 1.5 carboxymethylenebutenolidase compare
BPHYT_RS11555 +0.9 1.8 allantoinase compare
BPHYT_RS33135 +0.9 1.2 LysR family transcriptional regulator compare
BPHYT_RS00295 +0.9 2.3 hypothetical protein compare
BPHYT_RS25955 +0.9 1.2 transcriptional regulator compare
BPHYT_RS34485 +0.9 2.0 diguanylate phosphodiesterase compare
BPHYT_RS30645 +0.9 1.9 hypothetical protein compare
BPHYT_RS10260 +0.9 1.7 hypothetical protein compare
BPHYT_RS24760 +0.9 1.8 cytochrome B561 compare
BPHYT_RS04720 +0.9 4.4 transcriptional regulator compare
BPHYT_RS08825 +0.9 1.2 tartronate semialdehyde reductase compare
BPHYT_RS12380 +0.9 1.8 ABC transporter permease compare
BPHYT_RS10635 +0.9 1.7 transcriptional regulator compare
BPHYT_RS26975 +0.9 1.1 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS26910 +0.9 2.0 hypothetical protein compare
BPHYT_RS07665 +0.9 3.1 hypothetical protein compare
BPHYT_RS13105 +0.9 1.8 LacI family transcription regulator compare
BPHYT_RS16120 +0.9 1.9 sorbitol dehydrogenase, D-fructose forming (EC 1.1.1.14) (from data) compare
BPHYT_RS25210 +0.9 1.1 drug:proton antiporter compare
BPHYT_RS32145 +0.9 3.9 type IV secretory pathway protein VirD4 compare
BPHYT_RS16420 +0.9 2.9 copper resistance protein CopD compare
BPHYT_RS21585 +0.9 2.3 short-chain dehydrogenase compare
BPHYT_RS08850 +0.9 0.4 transcriptional regulator compare
BPHYT_RS09860 +0.9 0.7 pilus assembly protein PilP compare
BPHYT_RS21025 +0.9 1.0 cation-binding protein compare
BPHYT_RS08510 +0.9 1.6 acyl-CoA dehydrogenase compare
BPHYT_RS09640 +0.9 3.9 DNAase compare
BPHYT_RS08525 +0.9 0.7 SAM-dependent methyltransferase compare
BPHYT_RS36230 +0.9 2.0 hypothetical protein compare
BPHYT_RS15415 +0.9 5.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17905 +0.9 1.0 fimbrial assembly family protein compare
BPHYT_RS10430 +0.8 2.8 glycosyl transferase family 1 compare
BPHYT_RS21765 +0.8 2.0 IclR family transcriptional regulator compare
BPHYT_RS29215 +0.8 2.8 porin compare
BPHYT_RS02635 +0.8 5.1 membrane protein compare
BPHYT_RS05670 +0.8 1.8 hypothetical protein compare
BPHYT_RS35955 +0.8 0.7 hypothetical protein compare
BPHYT_RS03625 +0.8 5.1 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS27145 +0.8 1.6 TetR family transcriptional regulator compare
BPHYT_RS08395 +0.8 2.1 DSBA oxidoreductase compare
BPHYT_RS11050 +0.8 1.3 molecular chaperone compare
BPHYT_RS06065 +0.8 4.4 cytochrome C compare
BPHYT_RS30120 +0.8 1.7 heavy metal transporter compare
BPHYT_RS36460 +0.8 1.8 hypothetical protein compare
BPHYT_RS31960 +0.8 1.9 hypothetical protein compare
BPHYT_RS21160 +0.8 2.9 NAD(P) transhydrogenase subunit beta compare
BPHYT_RS05355 +0.8 1.8 Crp/Fnr family transcriptional regulator compare
BPHYT_RS26135 +0.8 0.9 ABC transporter permease compare
BPHYT_RS07860 +0.8 0.9 benzoate 1,2-dioxygenase subunit beta compare
BPHYT_RS16435 +0.8 6.1 alcohol dehydrogenase compare
BPHYT_RS09765 +0.8 1.0 G-D-S-L family lipolytic protein compare
BPHYT_RS18600 +0.8 1.8 glutathione S-transferase compare
BPHYT_RS12060 +0.8 0.9 hypothetical protein compare
BPHYT_RS29945 +0.8 1.2 histidine kinase compare
BPHYT_RS32110 +0.8 2.5 transcriptional regulator compare
BPHYT_RS09145 +0.8 5.8 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS26160 +0.8 1.8 membrane protein compare
BPHYT_RS29870 +0.8 1.0 2-dehydropantoate 2-reductase compare
BPHYT_RS25845 +0.8 0.7 RND transporter MFP subunit compare
BPHYT_RS07925 +0.8 1.7 glutamine amidotransferase compare
BPHYT_RS07760 +0.8 1.0 diguanylate phosphodiesterase compare
BPHYT_RS16675 +0.8 0.9 dihydroorotase compare
BPHYT_RS34850 +0.8 2.7 acylphosphatase compare
BPHYT_RS14130 +0.8 2.9 phosphate ABC transporter ATP-binding protein compare
BPHYT_RS30990 +0.8 1.2 dTDP-4-dehydrorhamnose 3,5-epimerase compare
BPHYT_RS11765 +0.8 0.6 polyamine ABC transporter permease compare
BPHYT_RS18710 +0.8 1.2 membrane protein compare
BPHYT_RS00955 +0.8 1.8 DNA polymerase compare
BPHYT_RS16430 +0.8 6.5 cytochrome C compare
BPHYT_RS21130 +0.8 2.1 F420-dependent oxidoreductase compare
BPHYT_RS04875 +0.8 1.5 alpha-ribazole phosphatase compare
BPHYT_RS30830 +0.8 1.0 MFS transporter compare
BPHYT_RS16060 +0.8 1.8 ribonucleotide-diphosphate reductase subunit alpha compare
BPHYT_RS27785 +0.8 1.6 hypothetical protein compare
BPHYT_RS02525 +0.8 4.6 membrane protein compare
BPHYT_RS14340 +0.8 6.0 Fis family transcriptional regulator compare
BPHYT_RS25575 +0.8 0.9 alpha/beta hydrolase compare
BPHYT_RS07140 +0.8 1.6 hypothetical protein compare
BPHYT_RS34185 +0.8 3.2 cold-shock protein compare
BPHYT_RS30915 +0.8 1.6 hypothetical protein compare
BPHYT_RS16390 +0.8 2.5 MarR family transcriptional regulator compare
BPHYT_RS11360 +0.8 1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in nophagecontrol experiments