Experiment set39S368 for Burkholderia phytofirmans PsJN

Compare to:

36hr PHYTO6 MOI 0.1

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS11705 +3.5 2.7 hypothetical protein compare
BPHYT_RS19570 +3.2 28.0 sodium/hydrogen exchanger compare
BPHYT_RS19565 +3.2 22.7 gamma-glutamyl:cysteine ligase compare
BPHYT_RS14140 +3.1 5.9 phosphate transporter permease subunit PstC compare
BPHYT_RS33820 +2.8 26.3 histidine kinase compare
BPHYT_RS02595 +2.5 3.3 sulfurtransferase compare
BPHYT_RS27890 +2.5 1.5 hypothetical protein compare
BPHYT_RS04335 +2.5 2.3 membrane protein compare
BPHYT_RS04945 +2.3 20.6 membrane protein compare
BPHYT_RS04950 +2.3 19.9 hypothetical protein compare
BPHYT_RS02905 +2.3 20.7 RNA polymerase subunit sigma-54 compare
BPHYT_RS04965 +2.2 11.5 ATP-binding protein compare
BPHYT_RS25935 +2.2 1.8 type III secretion protein compare
BPHYT_RS05575 +2.2 19.5 Fis family transcriptional regulator compare
BPHYT_RS09330 +2.1 19.4 phytoene synthase compare
BPHYT_RS06075 +2.1 8.7 hypothetical protein compare
BPHYT_RS09500 +2.0 6.9 glucose-6-phosphate isomerase compare
BPHYT_RS05590 +2.0 15.1 trehalose-6-phosphate synthase compare
BPHYT_RS14400 +2.0 6.8 anti-sigma factor compare
BPHYT_RS02540 +2.0 5.4 hypothetical protein compare
BPHYT_RS04940 +1.9 2.9 hypothetical protein compare
BPHYT_RS33920 +1.8 13.7 type II citrate synthase compare
BPHYT_RS20665 +1.8 1.3 LysR family transcriptional regulator compare
BPHYT_RS12845 +1.8 13.8 ATPase compare
BPHYT_RS13645 +1.8 15.8 threonine--tRNA ligase compare
BPHYT_RS23910 +1.8 7.9 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS05560 +1.7 7.8 Fis family transcriptional regulator compare
BPHYT_RS30750 +1.7 1.9 GntR family transcriptional regulator compare
BPHYT_RS04290 +1.7 1.1 glycosyl transferase family 2 compare
BPHYT_RS12725 +1.7 14.2 regulator compare
BPHYT_RS15620 +1.7 4.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS05610 +1.7 11.0 DNA-cytosine methyltransferase compare
BPHYT_RS06175 +1.7 5.5 LPS biosynthesis compare
BPHYT_RS18655 +1.6 6.6 3-oxoacyl-ACP synthase compare
BPHYT_RS05155 +1.6 9.9 acetyltransferase GCN5 compare
BPHYT_RS14485 +1.6 6.4 ribonuclease E compare
BPHYT_RS09815 +1.6 2.7 malate synthase compare
BPHYT_RS06985 +1.6 6.1 fumarate hydratase compare
BPHYT_RS08850 +1.6 0.7 transcriptional regulator compare
BPHYT_RS30995 +1.6 0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS09315 +1.6 0.6 chemotaxis protein CheY compare
BPHYT_RS14395 +1.6 5.7 sugar dehydratase compare
BPHYT_RS20380 +1.5 3.6 LysR family transcriptional regulator compare
BPHYT_RS14855 +1.5 0.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06530 +1.5 1.9 membrane protein compare
BPHYT_RS07140 +1.5 1.5 hypothetical protein compare
BPHYT_RS20155 +1.5 1.1 hypothetical protein compare
BPHYT_RS16710 +1.5 0.6 LysR family transcriptional regulator compare
BPHYT_RS12290 +1.5 3.3 universal stress protein UspA compare
BPHYT_RS09660 +1.4 7.3 trehalose-6-phosphate synthase compare
BPHYT_RS28595 +1.4 1.5 glyoxalase compare
BPHYT_RS13610 +1.4 2.6 MerR family transcriptional regulator compare
BPHYT_RS08945 +1.4 10.4 hypothetical protein compare
BPHYT_RS31615 +1.4 1.7 thiamine pyrophosphate protein compare
BPHYT_RS18705 +1.4 1.5 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS32495 +1.4 3.2 ABC transporter compare
BPHYT_RS16335 +1.4 3.8 membrane protein compare
BPHYT_RS26030 +1.4 3.3 cysteine hydrolase compare
BPHYT_RS25210 +1.4 1.8 drug:proton antiporter compare
BPHYT_RS12150 +1.4 9.9 PII uridylyl-transferase compare
BPHYT_RS02865 +1.4 0.8 hypothetical protein compare
BPHYT_RS06335 +1.4 1.3 CopG family transcriptional regulator compare
BPHYT_RS01630 +1.4 1.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS12840 +1.4 3.6 pyruvate dehydrogenase compare
BPHYT_RS32830 +1.3 2.4 AraC family transcriptional regulator compare
BPHYT_RS14145 +1.3 7.2 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS25800 +1.3 0.9 sugar ABC transporter permease compare
BPHYT_RS02525 +1.3 6.0 membrane protein compare
BPHYT_RS01435 +1.3 10.9 LysR family transcriptional regulator compare
BPHYT_RS11815 +1.3 1.5 alcohol dehydrogenase compare
BPHYT_RS06455 +1.3 1.4 potassium-transporting ATPase C chain compare
BPHYT_RS07760 +1.3 0.9 diguanylate phosphodiesterase compare
BPHYT_RS35215 +1.3 1.9 dehydrogenase compare
BPHYT_RS32260 +1.3 1.2 hypothetical protein compare
BPHYT_RS32395 +1.3 1.1 hypothetical protein compare
BPHYT_RS17035 +1.3 1.3 sugar kinase compare
BPHYT_RS34185 +1.3 5.2 cold-shock protein compare
BPHYT_RS02640 +1.3 9.6 cytochrome C oxidase compare
BPHYT_RS24135 +1.3 2.9 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS31225 +1.3 2.6 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS16675 +1.3 1.4 dihydroorotase compare
BPHYT_RS17100 +1.3 4.6 RNA pyrophosphohydrolase compare
BPHYT_RS04285 +1.2 0.6 rhamnosyltransferase compare
BPHYT_RS11745 +1.2 1.2 (2Fe-2S)-binding protein compare
BPHYT_RS29320 +1.2 0.8 histidine kinase compare
BPHYT_RS07255 +1.2 1.7 4-oxalocrotonate decarboxylase compare
BPHYT_RS23155 +1.2 1.7 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS28670 +1.2 1.6 MFS transporter compare
BPHYT_RS05615 +1.2 1.0 hypothetical protein compare
BPHYT_RS34920 +1.2 1.9 IclR family transcriptional regulator compare
BPHYT_RS12985 +1.2 1.2 amino acid acetyltransferase compare
BPHYT_RS09355 +1.2 1.5 LysR family transcriptional regulator compare
BPHYT_RS03620 +1.2 5.8 poly(A) polymerase compare
BPHYT_RS24270 +1.2 1.6 C4-dicarboxylate ABC transporter substrate-binding protein compare
BPHYT_RS09850 +1.2 2.2 molybdopterin oxidoreductase compare
BPHYT_RS28505 +1.2 1.4 5-deoxyglucuronate isomerase compare
BPHYT_RS10320 +1.2 2.6 hypothetical protein compare
BPHYT_RS34025 +1.2 1.5 hypothetical protein compare
BPHYT_RS07570 +1.2 1.2 hypothetical protein compare
BPHYT_RS08995 +1.1 0.9 hypothetical protein compare
BPHYT_RS09640 +1.1 5.0 DNAase compare
BPHYT_RS01340 +1.1 1.3 ChrB domain-containing protein compare
BPHYT_RS07840 +1.1 1.3 muconate cycloisomerase compare
BPHYT_RS16175 +1.1 0.7 hemolysin D compare
BPHYT_RS02650 +1.1 2.9 membrane protein compare
BPHYT_RS03505 +1.1 1.5 FAD-binding protein compare
BPHYT_RS06375 +1.1 2.8 ribonuclease compare
BPHYT_RS10120 +1.1 2.0 membrane protein compare
BPHYT_RS05585 +1.1 4.5 hypothetical protein compare
BPHYT_RS07085 +1.1 1.4 LysR family transcriptional regulator compare
BPHYT_RS26930 +1.1 5.1 mechanosensitive ion channel protein compare
BPHYT_RS02005 +1.1 1.7 diguanylate phosphodiesterase compare
BPHYT_RS34445 +1.1 3.0 GntR family transcriptional regulator compare
BPHYT_RS27370 +1.1 1.9 CoA transferase compare
BPHYT_RS10165 +1.1 0.8 transcriptional regulator compare
BPHYT_RS10250 +1.1 2.8 inosine-5-monophosphate dehydrogenase compare
BPHYT_RS20750 +1.1 1.4 LacI family transcriptional regulator compare
BPHYT_RS02410 +1.1 2.5 alpha/beta hydrolase compare
BPHYT_RS10995 +1.1 1.7 GntR family transcriptional regulator compare
BPHYT_RS34770 +1.1 1.8 chemotaxis protein compare
BPHYT_RS03410 +1.1 1.9 queuine tRNA-ribosyltransferase compare
BPHYT_RS13200 +1.1 2.0 molybdopterin binding oxidoreductase compare
BPHYT_RS04005 +1.1 2.1 GDP-L-fucose synthase compare
BPHYT_RS21025 +1.1 1.3 cation-binding protein compare
BPHYT_RS32240 +1.1 1.1 chromosome replication initiation inhibitor protein compare
BPHYT_RS09445 +1.1 2.4 trigger factor compare
BPHYT_RS13885 +1.1 2.1 myo-inositol 2-dehydrogenase compare
BPHYT_RS05670 +1.1 2.0 hypothetical protein compare
BPHYT_RS14845 +1.1 0.7 cysteine synthase compare
BPHYT_RS00920 +1.1 3.3 transposase compare
BPHYT_RS21725 +1.0 1.5 taurine ABC transporter substrate-binding protein compare
BPHYT_RS26025 +1.0 0.6 hypothetical protein compare
BPHYT_RS16390 +1.0 3.4 MarR family transcriptional regulator compare
BPHYT_RS28100 +1.0 2.0 hypothetical protein compare
BPHYT_RS26595 +1.0 1.0 carbonic anhydrase compare
BPHYT_RS06065 +1.0 5.3 cytochrome C compare
BPHYT_RS23210 +1.0 2.3 MFS transporter compare
BPHYT_RS12635 +1.0 4.1 translation factor Sua5 compare
BPHYT_RS17920 +1.0 1.5 protein CyaY compare
BPHYT_RS21475 +1.0 1.3 hypothetical protein compare
BPHYT_RS20790 +1.0 0.9 TetR family transcriptional regulator compare
BPHYT_RS31685 +1.0 2.2 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS16210 +1.0 1.8 peptidase compare
BPHYT_RS00750 +1.0 3.2 SpoVT/AbrB domain-containing protein compare
BPHYT_RS29855 +1.0 1.0 protein-tyrosine-phosphatase compare
BPHYT_RS12925 +1.0 0.7 exodeoxyribonuclease III compare
BPHYT_RS02635 +1.0 5.9 membrane protein compare
BPHYT_RS02530 +1.0 2.9 hypothetical protein compare
BPHYT_RS08510 +1.0 1.6 acyl-CoA dehydrogenase compare
BPHYT_RS25845 +1.0 0.9 RND transporter MFP subunit compare
BPHYT_RS32960 +1.0 2.4 short-chain dehydrogenase compare
BPHYT_RS01960 +1.0 2.6 cytochrome C compare
BPHYT_RS18255 +1.0 1.5 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS26080 +1.0 0.7 ABC transporter ATPase compare
BPHYT_RS05130 +1.0 2.9 hypothetical protein compare
BPHYT_RS29720 +1.0 1.1 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS21045 +1.0 1.5 bis(5'-nucleosyl)-tetraphosphatase compare
BPHYT_RS36470 +1.0 0.6 hypothetical protein compare
BPHYT_RS03625 +1.0 4.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS21770 +0.9 1.8 aldehyde dehydrogenase compare
BPHYT_RS33390 +0.9 1.7 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS01240 +0.9 1.8 hypothetical protein compare
BPHYT_RS27570 +0.9 2.2 universal stress protein UspA compare
BPHYT_RS06070 +0.9 5.7 cytochrome C compare
BPHYT_RS15105 +0.9 3.5 FAD-dependent oxidoreductase compare
BPHYT_RS23940 +0.9 0.5 GntR family transcriptional regulator compare
BPHYT_RS33695 +0.9 1.2 molybdenum ABC transporter ATPase compare
BPHYT_RS00340 +0.9 2.3 hypothetical protein compare
BPHYT_RS26740 +0.9 1.1 hypothetical protein compare
BPHYT_RS27660 +0.9 1.3 hypothetical protein compare
BPHYT_RS24510 +0.9 3.1 alkylphosphonate utilization protein compare
BPHYT_RS11250 +0.9 2.3 saccharopine dehydrogenase compare
BPHYT_RS02210 +0.9 2.6 DeoR family transcriptional regulator compare
BPHYT_RS28515 +0.9 2.4 mannonate dehydratase compare
BPHYT_RS17640 +0.9 0.6 2-alkenal reductase compare
BPHYT_RS28485 +0.9 0.5 GntR family transcriptional regulator compare
BPHYT_RS21995 +0.9 1.9 (2Fe-2S)-binding protein compare
BPHYT_RS24965 +0.9 1.4 hypothetical protein compare
BPHYT_RS18265 +0.9 1.9 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS34485 +0.9 1.9 diguanylate phosphodiesterase compare
BPHYT_RS27845 +0.9 2.2 beta-lactamase compare
BPHYT_RS09160 +0.9 4.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS36495 +0.9 2.2 peptidase compare
BPHYT_RS17490 +0.9 0.9 haloacid dehalogenase compare
BPHYT_RS20010 +0.9 3.9 membrane protein compare
BPHYT_RS22855 +0.9 2.9 aldehyde-activating protein compare
BPHYT_RS26975 +0.9 1.2 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS34495 +0.9 2.0 phenol degradation protein meta compare
BPHYT_RS10740 +0.9 0.8 LuxR family transcriptional regulator compare
BPHYT_RS23630 +0.9 0.9 hypothetical protein compare
BPHYT_RS21585 +0.9 2.7 short-chain dehydrogenase compare
BPHYT_RS01965 +0.9 1.2 tRNA-Ala compare
BPHYT_RS24975 +0.9 2.0 RNA polymerase sigma24 factor compare
BPHYT_RS02985 +0.9 1.1 MaoC family dehydratase compare
BPHYT_RS02685 +0.9 5.6 cytochrome C oxidase subunit I compare
BPHYT_RS20280 +0.9 2.3 hypothetical protein compare
BPHYT_RS09580 +0.9 2.1 2-aminoadipate aminotransferase compare
BPHYT_RS24045 +0.9 2.0 amino acid ABC transporter compare
BPHYT_RS30645 +0.9 1.3 hypothetical protein compare
BPHYT_RS32735 +0.9 3.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments