Experiment set39S359 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS14140		+3.2	7.3	phosphate transporter permease subunit PstC
BPHYT_RS09500		+2.9	11.8	glucose-6-phosphate isomerase
BPHYT_RS33820		+2.8	25.1	histidine kinase
BPHYT_RS11705		+2.8	2.5	hypothetical protein
BPHYT_RS05575		+2.4	19.8	Fis family transcriptional regulator
BPHYT_RS06175		+2.4	7.6	LPS biosynthesis
BPHYT_RS01435		+2.3	19.6	LysR family transcriptional regulator
BPHYT_RS14400		+2.3	6.7	anti-sigma factor
BPHYT_RS05560		+2.3	9.7	Fis family transcriptional regulator
BPHYT_RS05590		+2.3	16.0	trehalose-6-phosphate synthase
BPHYT_RS04290		+2.2	1.3	glycosyl transferase family 2
BPHYT_RS02595		+2.1	4.8	sulfurtransferase
BPHYT_RS04950		+2.1	16.7	hypothetical protein
BPHYT_RS04945		+2.1	18.6	membrane protein
BPHYT_RS14395		+2.1	10.0	sugar dehydratase
BPHYT_RS18655		+2.1	9.9	3-oxoacyl-ACP synthase
BPHYT_RS08850		+2.1	0.9	transcriptional regulator
BPHYT_RS14855		+2.0	0.8	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS09330		+2.0	17.5	phytoene synthase
BPHYT_RS12845		+2.0	15.8	ATPase
BPHYT_RS16175		+2.0	1.4	hemolysin D
BPHYT_RS06985		+2.0	13.3	fumarate hydratase
BPHYT_RS25935		+2.0	1.6	type III secretion protein
BPHYT_RS16840		+1.9	4.4	transketolase
BPHYT_RS02865		+1.9	1.1	hypothetical protein
BPHYT_RS06075		+1.9	9.0	hypothetical protein
BPHYT_RS04940		+1.8	3.3	hypothetical protein
BPHYT_RS06610		+1.8	2.2	triosephosphate isomerase
BPHYT_RS28620		+1.8	2.4	enoyl-CoA hydratase
BPHYT_RS36220		+1.8	2.0	hypothetical protein
BPHYT_RS04285		+1.7	0.8	rhamnosyltransferase
BPHYT_RS12725		+1.7	14.8	regulator
BPHYT_RS33920		+1.7	10.3	type II citrate synthase
BPHYT_RS05010		+1.7	4.2	RpiR family transcriptional regulator
BPHYT_RS23910		+1.7	4.7	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS01455		+1.7	1.8	peptide deformylase
BPHYT_RS15145		+1.6	3.6	3-oxoacyl-ACP synthase
BPHYT_RS05615		+1.6	2.3	hypothetical protein
BPHYT_RS22835		+1.6	1.8	flagellar motor protein MotA
BPHYT_RS17035		+1.6	1.4	sugar kinase
BPHYT_RS15160		+1.6	6.5	hypothetical protein
BPHYT_RS02905		+1.6	14.1	RNA polymerase subunit sigma-54
BPHYT_RS10750		+1.6	1.2	LysR family transcriptional regulator
BPHYT_RS26855		+1.6	3.0	carboxyvinyl-carboxyphosphonate phosphorylmutase
BPHYT_RS33400		+1.5	2.7	magnesium transporter CorA
BPHYT_RS12230		+1.5	2.1	hypothetical protein
BPHYT_RS32495		+1.5	3.4	ABC transporter
BPHYT_RS26975		+1.5	2.2	L-lactate dehydrogenase, LldE subunit (from data)
BPHYT_RS09660		+1.5	7.9	trehalose-6-phosphate synthase
BPHYT_RS00920		+1.5	3.1	transposase
BPHYT_RS02180		+1.5	1.6	hypothetical protein
BPHYT_RS14845		+1.5	0.9	cysteine synthase
BPHYT_RS23615		+1.5	3.5	XRE family transcriptional regulator
BPHYT_RS26685		+1.5	1.2	precorrin-8X methylmutase
BPHYT_RS15620		+1.5	4.2	peptidyl-prolyl cis-trans isomerase
BPHYT_RS12150		+1.5	10.2	PII uridylyl-transferase
BPHYT_RS24630		+1.5	2.0	(2Fe-2S)-binding protein
BPHYT_RS19565		+1.5	8.0	gamma-glutamyl:cysteine ligase
BPHYT_RS09815		+1.5	2.4	malate synthase
BPHYT_RS04315		+1.5	6.8	UDP-N-acetylglucosamine 2-epimerase
BPHYT_RS20665		+1.5	0.9	LysR family transcriptional regulator
BPHYT_RS05190		+1.5	5.8	ADP-heptose--LPS heptosyltransferase
BPHYT_RS30750		+1.5	1.6	GntR family transcriptional regulator
BPHYT_RS17640		+1.5	0.9	2-alkenal reductase
BPHYT_RS17290		+1.5	10.1	porin
BPHYT_RS10165		+1.5	0.8	transcriptional regulator
BPHYT_RS07255		+1.4	2.0	4-oxalocrotonate decarboxylase
BPHYT_RS04890		+1.4	1.9	cobalamin biosynthesis protein CobD
BPHYT_RS16335		+1.4	3.6	membrane protein
BPHYT_RS33515		+1.4	6.0	porin
BPHYT_RS14145		+1.4	7.6	phosphate ABC transporter substrate-binding protein
BPHYT_RS36130		+1.4	1.6	hypothetical protein
BPHYT_RS11955		+1.4	2.1	hemolysin D
BPHYT_RS25770		+1.4	1.0	hypothetical protein
BPHYT_RS02435		+1.4	2.6	hypothetical protein
BPHYT_RS19570		+1.4	10.2	sodium/hydrogen exchanger
BPHYT_RS02975		+1.4	1.5	membrane protein
BPHYT_RS08945		+1.4	5.2	hypothetical protein
BPHYT_RS03725		+1.4	0.6	serine hydroxymethyltransferase
BPHYT_RS05155		+1.4	9.6	acetyltransferase GCN5
BPHYT_RS12900		+1.4	1.4	transposase
BPHYT_RS21495		+1.3	1.7	ABC transporter
BPHYT_RS17525		+1.3	1.3	glutaredoxin
BPHYT_RS15175		+1.3	6.7	AMP-dependent synthetase
BPHYT_RS31040		+1.3	2.8	sugar transporter
BPHYT_RS16245		+1.3	4.5	phosphoribosylaminoimidazole carboxylase
BPHYT_RS04430		+1.3	1.8	amino acid ABC transporter ATPase
BPHYT_RS15190		+1.3	1.3	acyl carrier protein
BPHYT_RS14185		+1.3	1.4	transcription elongation factor GreA
BPHYT_RS33615		+1.3	2.5	decarboxylase
BPHYT_RS28595		+1.3	1.3	glyoxalase
BPHYT_RS28670		+1.3	2.4	MFS transporter
BPHYT_RS28300		+1.3	0.9	histone nucleoid-structuring protein H-NS
BPHYT_RS10360		+1.3	2.7	MFS transporter
BPHYT_RS01170		+1.3	1.2	hypothetical protein
BPHYT_RS02530		+1.3	4.3	hypothetical protein
BPHYT_RS00325		+1.3	1.0	hypothetical protein
BPHYT_RS33905		+1.2	1.9	3-isopropylmalate dehydratase small subunit
BPHYT_RS02880		+1.2	1.7	ATP-dependent protease
BPHYT_RS15135		+1.2	5.5	3-ketoacyl-ACP reductase
BPHYT_RS04385		+1.2	2.3	nucleoside-diphosphate sugar oxidoreductase
BPHYT_RS16210		+1.2	1.9	peptidase
BPHYT_RS29410		+1.2	3.2	HPr kinase
BPHYT_RS12520		+1.2	2.7	nicotinate phosphoribosyltransferase
BPHYT_RS06685		+1.2	2.5	NADH:ubiquinone oxidoreductase subunit M
BPHYT_RS21585		+1.2	3.6	short-chain dehydrogenase
BPHYT_RS22060		+1.2	10.1	amino acid transporter
BPHYT_RS03460		+1.2	6.0	mammalian cell entry protein
BPHYT_RS29110		+1.2	2.2	DNA-directed DNA polymerase
BPHYT_RS09640		+1.2	5.0	DNAase
BPHYT_RS18635		+1.2	2.1	LamB/YcsF family protein
BPHYT_RS28505		+1.2	1.8	5-deoxyglucuronate isomerase
BPHYT_RS05025		+1.2	1.8	sugar ABC transporter substrate-binding protein
BPHYT_RS09280		+1.2	0.8	pyridoxal-5'-phosphate-dependent protein subunit beta
BPHYT_RS30450		+1.2	0.8	ABC transporter permease
BPHYT_RS02135		+1.2	1.6	glyoxylate reductase
BPHYT_RS15130		+1.2	6.8	3-oxoacyl-ACP synthase
BPHYT_RS14740		+1.2	7.7	threonine-phosphate decarboxylase
BPHYT_RS29365		+1.2	1.5	ATP-NAD kinase
BPHYT_RS26510		+1.2	1.3	transcriptional regulator
BPHYT_RS04885		+1.2	1.7	threonine-phosphate decarboxylase
BPHYT_RS32260		+1.1	0.9	hypothetical protein
BPHYT_RS10400		+1.1	1.0	taurine ABC transporter permease
BPHYT_RS12290		+1.1	2.2	universal stress protein UspA
BPHYT_RS13470		+1.1	0.7	arylsulfate sulfotransferase
BPHYT_RS18600		+1.1	1.8	glutathione S-transferase
BPHYT_RS09980		+1.1	1.1	TetR family transcriptional regulator
BPHYT_RS34920		+1.1	1.0	IclR family transcriptional regulator
BPHYT_RS16675		+1.1	1.1	dihydroorotase
BPHYT_RS28860		+1.1	1.1	haloacid dehalogenase
BPHYT_RS02525		+1.1	5.9	membrane protein
BPHYT_RS03455		+1.1	2.6	paraquat-inducible protein A
BPHYT_RS09145		+1.1	6.0	poly-beta-hydroxybutyrate polymerase
BPHYT_RS31515		+1.1	2.0	agmatinase
BPHYT_RS30990		+1.1	1.7	dTDP-4-dehydrorhamnose 3,5-epimerase
BPHYT_RS33695		+1.1	1.4	molybdenum ABC transporter ATPase
BPHYT_RS20380		+1.1	2.1	LysR family transcriptional regulator
BPHYT_RS13200		+1.1	2.1	molybdopterin binding oxidoreductase
BPHYT_RS11040		+1.1	1.7	GntR family transcriptional regulator
BPHYT_RS05355		+1.1	2.8	Crp/Fnr family transcriptional regulator
BPHYT_RS17165		+1.1	1.0	cell division protein ZapD
BPHYT_RS22265		+1.1	0.8	hypothetical protein
BPHYT_RS11895		+1.1	2.5	peroxiredoxin
BPHYT_RS21285		+1.1	2.6	hypothetical protein
BPHYT_RS02650		+1.1	2.5	membrane protein
BPHYT_RS24550		+1.1	2.0	hypothetical protein
BPHYT_RS26595		+1.1	1.4	carbonic anhydrase
BPHYT_RS20055		+1.0	1.6	hypothetical protein
BPHYT_RS33170		+1.0	1.7	acetyltransferase
BPHYT_RS28025		+1.0	1.1	3-hydroxyisobutyrate dehydrogenase
BPHYT_RS03470		+1.0	5.3	LysR family transcriptional regulator
BPHYT_RS17240		+1.0	0.5	cell division protein FtsW
BPHYT_RS10950		+1.0	2.3	transcriptional regulator
BPHYT_RS03450		+1.0	4.5	paraquat-inducible protein A
BPHYT_RS25830		+1.0	2.2	sugar ABC transporter substrate-binding protein
BPHYT_RS14895		+1.0	1.6	3-phosphoshikimate 1-carboxyvinyltransferase
BPHYT_RS01960		+1.0	3.1	cytochrome C
BPHYT_RS04820		+1.0	2.0	LysR family transcriptional regulator
BPHYT_RS34445		+1.0	2.2	GntR family transcriptional regulator
BPHYT_RS03505		+1.0	1.9	FAD-binding protein
BPHYT_RS16880		+1.0	0.7	malic enzyme
BPHYT_RS31615		+1.0	1.6	thiamine pyrophosphate protein
BPHYT_RS15195		+1.0	5.7	glycerol acyltransferase
BPHYT_RS31225		+1.0	1.3	D-alanyl-D-alanine dipeptidase
BPHYT_RS05670		+1.0	2.5	hypothetical protein
BPHYT_RS16340		+1.0	4.2	succinyl-CoA synthetase subunit alpha
BPHYT_RS30880		+1.0	2.2	peptidase S13
BPHYT_RS07145		+1.0	1.3	DNA-binding protein
BPHYT_RS09515		+1.0	2.2	phosphoribosylformylglycinamidine synthase
BPHYT_RS20010		+1.0	3.6	membrane protein
BPHYT_RS08125		+1.0	6.1	ATPase
BPHYT_RS24040		+1.0	2.4	amino acid ABC transporter
BPHYT_RS03465		+1.0	4.5	hypothetical protein
BPHYT_RS09365		+1.0	0.8	cytochrome C2
BPHYT_RS32475		+1.0	1.8	dihydroxyacetone kinase
BPHYT_RS28985		+1.0	2.6	hypothetical protein
BPHYT_RS02930		+1.0	0.9	KpsF/GutQ family protein
BPHYT_RS08565		+1.0	0.5	dihydroorotate dehydrogenase
BPHYT_RS15200		+1.0	2.8	hypothetical protein
BPHYT_RS14135		+1.0	3.5	phosphate transporter permease subunit PtsA
BPHYT_RS21475		+1.0	1.4	hypothetical protein
BPHYT_RS28330		+1.0	2.6	transcriptional regulator
BPHYT_RS15465		+1.0	2.2	tRNA-Gly
BPHYT_RS23875		+1.0	0.9	sugar ABC transporter ATP-binding protein
BPHYT_RS15320		+1.0	1.6	hypothetical protein
BPHYT_RS34995		+1.0	2.4	MFS transporter
BPHYT_RS02860		+1.0	0.4	membrane protein
BPHYT_RS00960		+1.0	2.7	recombinase RecA
BPHYT_RS30265		+1.0	1.3	hypothetical protein
BPHYT_RS27370		+1.0	1.2	CoA transferase
BPHYT_RS15170		+1.0	3.4	family 2 glycosyl transferase
BPHYT_RS36150		+0.9	1.9	hypothetical protein
BPHYT_RS03530		+0.9	3.7	hypothetical protein
BPHYT_RS25070		+0.9	1.2	choline ABC transporter permease
BPHYT_RS34320		+0.9	2.6	DNA-binding protein
BPHYT_RS31505		+0.9	1.2	hypothetical protein
BPHYT_RS04905		+0.9	2.1	quinol oxidase
BPHYT_RS02665		+0.9	5.5	MFS transporter
BPHYT_RS29750		+0.9	1.8	phosphoenolpyruvate phosphomutase
BPHYT_RS28280		+0.9	0.6	hypothetical protein

Specific Phenotypes

For 7 genes in this experiment