Experiment set39S358 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS09500		+3.1	14.3	glucose-6-phosphate isomerase
BPHYT_RS14140		+3.1	5.9	phosphate transporter permease subunit PstC
BPHYT_RS08850		+2.9	1.6	transcriptional regulator
BPHYT_RS15190		+2.7	5.3	acyl carrier protein
BPHYT_RS33820		+2.7	25.5	histidine kinase
BPHYT_RS11705		+2.6	2.8	hypothetical protein
BPHYT_RS06175		+2.5	10.3	LPS biosynthesis
BPHYT_RS04285		+2.5	1.4	rhamnosyltransferase
BPHYT_RS05575		+2.4	21.2	Fis family transcriptional regulator
BPHYT_RS01455		+2.3	3.1	peptide deformylase
BPHYT_RS14400		+2.3	7.0	anti-sigma factor
BPHYT_RS01435		+2.2	19.4	LysR family transcriptional regulator
BPHYT_RS05560		+2.2	11.5	Fis family transcriptional regulator
BPHYT_RS16710		+2.2	1.0	LysR family transcriptional regulator
BPHYT_RS02595		+2.1	3.2	sulfurtransferase
BPHYT_RS10065		+2.1	2.3	cytochrome C oxidase subunit I
BPHYT_RS18655		+2.1	9.4	3-oxoacyl-ACP synthase
BPHYT_RS03725		+2.1	1.5	serine hydroxymethyltransferase
BPHYT_RS14855		+2.0	0.8	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS02865		+2.0	1.5	hypothetical protein
BPHYT_RS09330		+2.0	18.5	phytoene synthase
BPHYT_RS07255		+2.0	3.6	4-oxalocrotonate decarboxylase
BPHYT_RS05590		+2.0	14.7	trehalose-6-phosphate synthase
BPHYT_RS04950		+2.0	14.2	hypothetical protein
BPHYT_RS12845		+1.9	16.1	ATPase
BPHYT_RS04945		+1.9	17.0	membrane protein
BPHYT_RS16840		+1.9	4.4	transketolase
BPHYT_RS06985		+1.9	12.2	fumarate hydratase
BPHYT_RS14395		+1.9	8.9	sugar dehydratase
BPHYT_RS04290		+1.8	0.9	glycosyl transferase family 2
BPHYT_RS15145		+1.8	4.6	3-oxoacyl-ACP synthase
BPHYT_RS22835		+1.8	1.6	flagellar motor protein MotA
BPHYT_RS26685		+1.8	1.7	precorrin-8X methylmutase
BPHYT_RS25935		+1.7	1.7	type III secretion protein
BPHYT_RS33920		+1.7	12.2	type II citrate synthase
BPHYT_RS31225		+1.7	4.2	D-alanyl-D-alanine dipeptidase
BPHYT_RS18600		+1.7	3.1	glutathione S-transferase
BPHYT_RS12725		+1.7	14.1	regulator
BPHYT_RS16175		+1.6	1.0	hemolysin D
BPHYT_RS06075		+1.6	7.5	hypothetical protein
BPHYT_RS03455		+1.6	4.0	paraquat-inducible protein A
BPHYT_RS26390		+1.6	1.5	antibiotic resistance protein
BPHYT_RS27890		+1.6	0.8	hypothetical protein
BPHYT_RS14145		+1.6	7.8	phosphate ABC transporter substrate-binding protein
BPHYT_RS05155		+1.5	10.6	acetyltransferase GCN5
BPHYT_RS32260		+1.5	1.4	hypothetical protein
BPHYT_RS23910		+1.5	4.4	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS09660		+1.5	8.0	trehalose-6-phosphate synthase
BPHYT_RS35310		+1.5	2.1	GCN5 family N-acetyltransferase
BPHYT_RS14845		+1.5	0.9	cysteine synthase
BPHYT_RS12150		+1.5	10.8	PII uridylyl-transferase
BPHYT_RS34655		+1.5	1.3	2-amino-3-ketobutyrate CoA ligase
BPHYT_RS27370		+1.5	2.2	CoA transferase
BPHYT_RS17290		+1.5	10.1	porin
BPHYT_RS30990		+1.5	2.5	dTDP-4-dehydrorhamnose 3,5-epimerase
BPHYT_RS19565		+1.5	9.1	gamma-glutamyl:cysteine ligase
BPHYT_RS17035		+1.4	0.9	sugar kinase
BPHYT_RS12990		+1.4	3.7	iron transporter
BPHYT_RS17640		+1.4	0.9	2-alkenal reductase
BPHYT_RS04385		+1.4	3.0	nucleoside-diphosphate sugar oxidoreductase
BPHYT_RS15195		+1.4	9.0	glycerol acyltransferase
BPHYT_RS21025		+1.4	1.7	cation-binding protein
BPHYT_RS16335		+1.4	3.8	membrane protein
BPHYT_RS04315		+1.4	5.5	UDP-N-acetylglucosamine 2-epimerase
BPHYT_RS28025		+1.4	1.5	3-hydroxyisobutyrate dehydrogenase
BPHYT_RS02905		+1.4	12.3	RNA polymerase subunit sigma-54
BPHYT_RS22860		+1.4	1.7	chemotaxis protein CheY
BPHYT_RS02540		+1.4	3.2	hypothetical protein
BPHYT_RS17165		+1.4	1.8	cell division protein ZapD
BPHYT_RS02880		+1.4	2.1	ATP-dependent protease
BPHYT_RS30810		+1.4	2.3	transcriptional regulator
BPHYT_RS15620		+1.4	4.6	peptidyl-prolyl cis-trans isomerase
BPHYT_RS08945		+1.4	5.4	hypothetical protein
BPHYT_RS25770		+1.4	1.2	hypothetical protein
BPHYT_RS25340		+1.3	2.6	sulfatase
BPHYT_RS04940		+1.3	2.1	hypothetical protein
BPHYT_RS02860		+1.3	0.7	membrane protein
BPHYT_RS16065		+1.3	0.9	LacI family transcriptional regulator
BPHYT_RS15175		+1.3	6.9	AMP-dependent synthetase
BPHYT_RS19570		+1.3	9.4	sodium/hydrogen exchanger
BPHYT_RS13200		+1.3	2.4	molybdopterin binding oxidoreductase
BPHYT_RS09815		+1.3	3.4	malate synthase
BPHYT_RS33515		+1.3	6.9	porin
BPHYT_RS32860		+1.3	1.1	hypothetical protein
BPHYT_RS26025		+1.3	0.7	hypothetical protein
BPHYT_RS06375		+1.3	2.7	ribonuclease
BPHYT_RS02760		+1.3	0.8	cytochrome BD oxidase subunit II
BPHYT_RS28065		+1.3	1.6	hypothetical protein
BPHYT_RS11040		+1.2	2.2	GntR family transcriptional regulator
BPHYT_RS06195		+1.2	1.5	membrane protein
BPHYT_RS20280		+1.2	1.9	hypothetical protein
BPHYT_RS10710		+1.2	1.4	sensor histidine kinase
BPHYT_RS09825		+1.2	2.0	Fe-S protein
BPHYT_RS22060		+1.2	10.3	amino acid transporter
BPHYT_RS16210		+1.2	2.6	peptidase
BPHYT_RS10215		+1.2	1.0	sulfate transporter
BPHYT_RS26040		+1.2	2.4	cysteine hydrolase
BPHYT_RS02650		+1.2	3.0	membrane protein
BPHYT_RS15200		+1.2	4.3	hypothetical protein
BPHYT_RS21910		+1.2	1.6	ABC transporter permease
BPHYT_RS04095		+1.2	0.9	SAM-dependent methyltransferase PhcB
BPHYT_RS23540		+1.2	3.1	RND transporter
BPHYT_RS16345		+1.2	3.3	succinyl-CoA ligase [ADP-forming] subunit beta
BPHYT_RS21990		+1.1	3.0	FAD-dependent oxidoreductase
BPHYT_RS03460		+1.1	5.8	mammalian cell entry protein
BPHYT_RS29410		+1.1	4.3	HPr kinase
BPHYT_RS35770		+1.1	1.0	glyoxalase
BPHYT_RS11010		+1.1	2.1	chromate transporter
BPHYT_RS10740		+1.1	1.0	LuxR family transcriptional regulator
BPHYT_RS02530		+1.1	5.6	hypothetical protein
BPHYT_RS15170		+1.1	5.4	family 2 glycosyl transferase
BPHYT_RS23975		+1.1	1.4	peroxidase
BPHYT_RS35480		+1.1	2.2	salicylyl-CoA 5-hydroxylase
BPHYT_RS23270		+1.1	1.1	enoyl-CoA hydratase
BPHYT_RS36400		+1.1	1.4	hypothetical protein
BPHYT_RS20150		+1.1	1.6	glycosyl transferase family 1
BPHYT_RS23155		+1.1	1.4	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data)
BPHYT_RS32200		+1.1	1.8	lytic transglycosylase
BPHYT_RS05190		+1.1	4.4	ADP-heptose--LPS heptosyltransferase
BPHYT_RS05905		+1.1	1.0	hypothetical protein
BPHYT_RS09850		+1.1	1.9	molybdopterin oxidoreductase
BPHYT_RS09145		+1.1	6.8	poly-beta-hydroxybutyrate polymerase
BPHYT_RS32110		+1.1	1.6	transcriptional regulator
BPHYT_RS05585		+1.1	4.1	hypothetical protein
BPHYT_RS31615		+1.1	1.6	thiamine pyrophosphate protein
BPHYT_RS30860		+1.1	2.3	sugar ABC transporter permease
BPHYT_RS24135		+1.0	1.7	alpha-dehydro-beta-deoxy-D-glucarate aldolase
BPHYT_RS04335		+1.0	0.7	membrane protein
BPHYT_RS15140		+1.0	4.3	beta-hydroxyacyl-ACP dehydratase
BPHYT_RS05670		+1.0	2.8	hypothetical protein
BPHYT_RS20155		+1.0	0.9	hypothetical protein
BPHYT_RS03450		+1.0	4.5	paraquat-inducible protein A
BPHYT_RS31205		+1.0	1.2	peptide ABC transporter ATP-binding protein
BPHYT_RS16340		+1.0	4.4	succinyl-CoA synthetase subunit alpha
BPHYT_RS08510		+1.0	1.7	acyl-CoA dehydrogenase
BPHYT_RS04300		+1.0	5.4	family 2 glycosyl transferase
BPHYT_RS26780		+1.0	4.6	chemotaxis protein CheR
BPHYT_RS16290		+1.0	1.5	hypothetical protein
BPHYT_RS36000		+1.0	1.7	hypothetical protein
BPHYT_RS26030		+1.0	2.3	cysteine hydrolase
BPHYT_RS16180		+1.0	0.5	TetR family transcriptional regulator
BPHYT_RS21805		+1.0	1.6	transcriptional regulator
BPHYT_RS12985		+1.0	0.9	amino acid acetyltransferase
BPHYT_RS26080		+1.0	0.7	ABC transporter ATPase
BPHYT_RS07450		+1.0	1.4	histidine kinase
BPHYT_RS15155		+1.0	5.2	hypothetical protein
BPHYT_RS15160		+1.0	4.3	hypothetical protein
BPHYT_RS11125		+1.0	1.0	alkylhydroperoxidase
BPHYT_RS33400		+1.0	2.3	magnesium transporter CorA
BPHYT_RS28985		+1.0	3.3	hypothetical protein
BPHYT_RS06350		+1.0	1.2	chemotaxis protein CheY
BPHYT_RS15130		+1.0	5.4	3-oxoacyl-ACP synthase
BPHYT_RS10145		+1.0	3.6	Mn-containing catalase
BPHYT_RS17490		+1.0	1.3	haloacid dehalogenase
BPHYT_RS24495		+1.0	2.1	transcriptional regulator
BPHYT_RS06610		+1.0	1.1	triosephosphate isomerase
BPHYT_RS26930		+1.0	4.3	mechanosensitive ion channel protein
BPHYT_RS15165		+1.0	3.9	histidine ammonia-lyase
BPHYT_RS11495		+1.0	1.9	membrane protein
BPHYT_RS20055		+1.0	1.1	hypothetical protein
BPHYT_RS30465		+1.0	1.1	short-chain dehydrogenase
BPHYT_RS16245		+1.0	3.0	phosphoribosylaminoimidazole carboxylase
BPHYT_RS27295		+1.0	1.6	hypothetical protein
BPHYT_RS14340		+1.0	5.8	Fis family transcriptional regulator
BPHYT_RS24270		+1.0	1.5	C4-dicarboxylate ABC transporter substrate-binding protein
BPHYT_RS19125		+1.0	2.3	short-chain dehydrogenase
BPHYT_RS04015		+1.0	1.9	glycosyl transferase
BPHYT_RS23955		+1.0	2.5	LysR family transcriptional regulator
BPHYT_RS09620		+0.9	1.0	aminodeoxychorismate lyase
BPHYT_RS24665		+0.9	1.5	ABC transporter permease
BPHYT_RS30425		+0.9	1.5	LysR family transcriptional regulator
BPHYT_RS30865		+0.9	2.5	sugar ABC transporter ATP-binding protein
BPHYT_RS33695		+0.9	1.2	molybdenum ABC transporter ATPase
BPHYT_RS18255		+0.9	1.3	phenylacetate-CoA oxygenase subunit PaaB
BPHYT_RS24770		+0.9	1.6	DeoR family transcriptional regulator
BPHYT_RS05615		+0.9	1.2	hypothetical protein
BPHYT_RS17705		+0.9	5.8	histidinol-phosphate aminotransferase
BPHYT_RS08125		+0.9	5.8	ATPase
BPHYT_RS02525		+0.9	5.1	membrane protein
BPHYT_RS20545		+0.9	0.8	hypothetical protein
BPHYT_RS23230		+0.9	2.0	histidine kinase
BPHYT_RS11170		+0.9	0.6	hypothetical protein
BPHYT_RS02640		+0.9	6.9	cytochrome C oxidase
BPHYT_RS06190		+0.9	0.7	heptosyltransferase
BPHYT_RS21445		+0.9	1.2	sugar ABC transporter ATP-binding protein
BPHYT_RS26570		+0.9	0.8	5'-nucleotidase
BPHYT_RS17750		+0.9	6.6	VacJ family lipoprotein
BPHYT_RS15150		+0.9	4.9	membrane protein
BPHYT_RS08960		+0.9	0.4	threonine synthase
BPHYT_RS12500		+0.9	1.4	hypothetical protein
BPHYT_RS02435		+0.9	1.3	hypothetical protein
BPHYT_RS21575		+0.9	2.3	hypothetical protein
BPHYT_RS24405		+0.9	2.9	type VI secretion system effector
BPHYT_RS14130		+0.9	3.2	phosphate ABC transporter ATP-binding protein
BPHYT_RS28505		+0.9	1.1	5-deoxyglucuronate isomerase
BPHYT_RS29325		+0.9	3.7	histidine kinase
BPHYT_RS20070		+0.9	0.9	hypothetical protein
BPHYT_RS18635		+0.9	1.8	LamB/YcsF family protein
BPHYT_RS25410		+0.9	1.5	porin
BPHYT_RS09280		+0.9	0.6	pyridoxal-5'-phosphate-dependent protein subunit beta

Specific Phenotypes

For 5 genes in this experiment