Experiment set39S350 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS11705		+3.2	2.5	hypothetical protein
BPHYT_RS19570		+3.0	27.2	sodium/hydrogen exchanger
BPHYT_RS19565		+3.0	22.3	gamma-glutamyl:cysteine ligase
BPHYT_RS14140		+2.8	5.7	phosphate transporter permease subunit PstC
BPHYT_RS33820		+2.7	26.4	histidine kinase
BPHYT_RS02905		+2.3	21.6	RNA polymerase subunit sigma-54
BPHYT_RS02595		+2.3	3.1	sulfurtransferase
BPHYT_RS04945		+2.3	20.1	membrane protein
BPHYT_RS04950		+2.3	18.8	hypothetical protein
BPHYT_RS05575		+2.2	17.8	Fis family transcriptional regulator
BPHYT_RS04285		+2.2	1.4	rhamnosyltransferase
BPHYT_RS10065		+2.2	2.7	cytochrome C oxidase subunit I
BPHYT_RS16710		+2.2	1.1	LysR family transcriptional regulator
BPHYT_RS06175		+2.2	5.8	LPS biosynthesis
BPHYT_RS14400		+2.2	6.0	anti-sigma factor
BPHYT_RS09330		+2.1	19.4	phytoene synthase
BPHYT_RS05560		+2.1	14.6	Fis family transcriptional regulator
BPHYT_RS06530		+2.1	3.1	membrane protein
BPHYT_RS26025		+2.0	1.5	hypothetical protein
BPHYT_RS13645		+1.9	16.9	threonine--tRNA ligase
BPHYT_RS16675		+1.9	2.7	dihydroorotase
BPHYT_RS05590		+1.9	16.1	trehalose-6-phosphate synthase
BPHYT_RS12845		+1.9	14.6	ATPase
BPHYT_RS06075		+1.9	14.8	hypothetical protein
BPHYT_RS04965		+1.8	12.3	ATP-binding protein
BPHYT_RS33920		+1.8	11.1	type II citrate synthase
BPHYT_RS09500		+1.8	9.5	glucose-6-phosphate isomerase
BPHYT_RS08130		+1.8	1.8	transposase
BPHYT_RS29085		+1.8	2.4	LysR family transcriptional regulator
BPHYT_RS12725		+1.7	14.9	regulator
BPHYT_RS18655		+1.7	4.9	3-oxoacyl-ACP synthase
BPHYT_RS09815		+1.7	2.7	malate synthase
BPHYT_RS05155		+1.6	7.1	acetyltransferase GCN5
BPHYT_RS06375		+1.6	4.5	ribonuclease
BPHYT_RS06985		+1.6	13.5	fumarate hydratase
BPHYT_RS01455		+1.6	2.1	peptide deformylase
BPHYT_RS09660		+1.6	10.9	trehalose-6-phosphate synthase
BPHYT_RS23910		+1.6	4.0	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS26685		+1.6	1.3	precorrin-8X methylmutase
BPHYT_RS04940		+1.6	2.5	hypothetical protein
BPHYT_RS25935		+1.6	1.5	type III secretion protein
BPHYT_RS26510		+1.5	2.1	transcriptional regulator
BPHYT_RS17095		+1.5	7.4	proline--tRNA ligase
BPHYT_RS06610		+1.5	1.9	triosephosphate isomerase
BPHYT_RS25970		+1.5	1.1	urea amidolyase
BPHYT_RS08335		+1.5	1.6	hypothetical protein
BPHYT_RS08945		+1.4	9.5	hypothetical protein
BPHYT_RS14485		+1.4	7.1	ribonuclease E
BPHYT_RS05610		+1.4	10.3	DNA-cytosine methyltransferase
BPHYT_RS25980		+1.4	1.4	urea carboxylase
BPHYT_RS02435		+1.4	1.4	hypothetical protein
BPHYT_RS33460		+1.4	1.6	protocatechuate 3,4-dioxygenase subunit alpha
BPHYT_RS14395		+1.4	7.3	sugar dehydratase
BPHYT_RS14145		+1.4	7.6	phosphate ABC transporter substrate-binding protein
BPHYT_RS12150		+1.4	10.6	PII uridylyl-transferase
BPHYT_RS02640		+1.3	9.5	cytochrome C oxidase
BPHYT_RS08850		+1.3	0.6	transcriptional regulator
BPHYT_RS14855		+1.3	0.5	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS02540		+1.3	3.3	hypothetical protein
BPHYT_RS10230		+1.3	2.7	hypothetical protein
BPHYT_RS26930		+1.3	6.2	mechanosensitive ion channel protein
BPHYT_RS18600		+1.3	2.4	glutathione S-transferase
BPHYT_RS02525		+1.3	6.8	membrane protein
BPHYT_RS16335		+1.2	3.6	membrane protein
BPHYT_RS12985		+1.2	1.3	amino acid acetyltransferase
BPHYT_RS29105		+1.2	2.4	class V aminotransferase
BPHYT_RS03620		+1.2	6.3	poly(A) polymerase
BPHYT_RS31400		+1.2	1.9	methyl-accepting chemotaxis protein
BPHYT_RS05585		+1.2	5.2	hypothetical protein
BPHYT_RS09160		+1.2	4.7	polyhydroxyalkanoate synthesis repressor PhaR
BPHYT_RS29605		+1.2	2.7	hypothetical protein
BPHYT_RS06105		+1.2	1.4	hypothetical protein
BPHYT_RS00980		+1.2	1.1	GCN5 family acetyltransferase
BPHYT_RS05615		+1.2	1.1	hypothetical protein
BPHYT_RS31225		+1.2	3.3	D-alanyl-D-alanine dipeptidase
BPHYT_RS31615		+1.2	1.4	thiamine pyrophosphate protein
BPHYT_RS23030		+1.2	1.9	gluconate 2-dehydrogenase
BPHYT_RS05880		+1.2	3.1	hypothetical protein
BPHYT_RS02865		+1.2	0.7	hypothetical protein
BPHYT_RS11555		+1.2	2.4	allantoinase
BPHYT_RS05325		+1.2	5.0	amidohydrolase
BPHYT_RS07255		+1.1	1.4	4-oxalocrotonate decarboxylase
BPHYT_RS29500		+1.1	2.2	hypothetical protein
BPHYT_RS04290		+1.1	0.6	glycosyl transferase family 2
BPHYT_RS28350		+1.1	1.4	fatty acid desaturase
BPHYT_RS11540		+1.1	1.9	ureidoglycolate hydrolase
BPHYT_RS28670		+1.1	1.4	MFS transporter
BPHYT_RS24095		+1.1	2.2	membrane protein
BPHYT_RS20055		+1.1	2.6	hypothetical protein
BPHYT_RS09390		+1.1	1.9	ABC transporter permease
BPHYT_RS09640		+1.1	4.6	DNAase
BPHYT_RS25335		+1.1	0.7	hypothetical protein
BPHYT_RS02635		+1.1	6.5	membrane protein
BPHYT_RS14895		+1.1	1.8	3-phosphoshikimate 1-carboxyvinyltransferase
BPHYT_RS12635		+1.1	2.9	translation factor Sua5
BPHYT_RS31515		+1.1	1.8	agmatinase
BPHYT_RS05670		+1.1	2.3	hypothetical protein
BPHYT_RS12840		+1.1	2.4	pyruvate dehydrogenase
BPHYT_RS26285		+1.1	2.5	glycogen debranching protein
BPHYT_RS02975		+1.0	1.2	membrane protein
BPHYT_RS28440		+1.0	2.7	heat shock Hsp20
BPHYT_RS19325		+1.0	1.6	glycine cleavage system H protein
BPHYT_RS27195		+1.0	2.9	LacI family transcriptional regulator
BPHYT_RS14195		+1.0	2.0	carbamoyl phosphate synthase small subunit
BPHYT_RS06470		+1.0	1.6	membrane protein
BPHYT_RS13200		+1.0	2.0	molybdopterin binding oxidoreductase
BPHYT_RS23455		+1.0	1.1	phosphorylase
BPHYT_RS24270		+1.0	1.5	C4-dicarboxylate ABC transporter substrate-binding protein
BPHYT_RS29175		+1.0	1.6	ABC transporter ATP-binding protein
BPHYT_RS10570		+1.0	2.1	LysR family transcriptional regulator
BPHYT_RS07290		+1.0	2.2	hypothetical protein
BPHYT_RS16390		+1.0	3.5	MarR family transcriptional regulator
BPHYT_RS35800		+1.0	1.8	TetR family transcriptional regulator
BPHYT_RS22330		+1.0	2.0	PhoB family transcriptional regulator
BPHYT_RS23880		+1.0	1.4	sugar ABC transporter permease
BPHYT_RS09565		+1.0	1.3	acetyl-CoA acetyltransferase
BPHYT_RS17920		+1.0	1.6	protein CyaY
BPHYT_RS09690		+1.0	1.5	phosphate starvation-inducible protein PsiF
BPHYT_RS34185		+1.0	3.3	cold-shock protein
BPHYT_RS34485		+1.0	1.9	diguanylate phosphodiesterase
BPHYT_RS05290		+1.0	0.9	hypothetical protein
BPHYT_RS32860		+1.0	0.9	hypothetical protein
BPHYT_RS28965		+1.0	1.7	hypothetical protein
BPHYT_RS23475		+1.0	1.1	luciferase
BPHYT_RS21475		+1.0	1.3	hypothetical protein
BPHYT_RS07840		+1.0	1.3	muconate cycloisomerase
BPHYT_RS04720		+1.0	3.7	transcriptional regulator
BPHYT_RS19260		+1.0	1.5	hypothetical protein
BPHYT_RS06065		+1.0	5.3	cytochrome C
BPHYT_RS32845		+1.0	2.1	ABC transporter substrate-binding protein
BPHYT_RS35215		+1.0	1.4	dehydrogenase
BPHYT_RS20165		+1.0	2.2	UDP-N-acetyl-D-mannosamine dehydrogenase
BPHYT_RS19920		+1.0	1.4	peptidyl-prolyl cis-trans isomerase
BPHYT_RS03625		+1.0	3.8	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS13935		+1.0	0.9	mannosyltransferase
BPHYT_RS15335		+1.0	6.7	coproporphyrinogen III oxidase
BPHYT_RS02530		+1.0	4.3	hypothetical protein
BPHYT_RS11765		+1.0	0.7	polyamine ABC transporter permease
BPHYT_RS01435		+0.9	8.8	LysR family transcriptional regulator
BPHYT_RS31050		+0.9	0.7	epimerase
BPHYT_RS22870		+0.9	1.4	copper transporter
BPHYT_RS07760		+0.9	1.6	diguanylate phosphodiesterase
BPHYT_RS13610		+0.9	1.8	MerR family transcriptional regulator
BPHYT_RS32150		+0.9	1.0	hypothetical protein
BPHYT_RS14340		+0.9	6.1	Fis family transcriptional regulator
BPHYT_RS17945		+0.9	2.4	cytochrome C biogenesis protein
BPHYT_RS09445		+0.9	3.0	trigger factor
BPHYT_RS16175		+0.9	0.6	hemolysin D
BPHYT_RS24135		+0.9	1.8	alpha-dehydro-beta-deoxy-D-glucarate aldolase
BPHYT_RS27490		+0.9	1.4	porin
BPHYT_RS29410		+0.9	2.1	HPr kinase
BPHYT_RS17545		+0.9	4.0	cold-shock protein
BPHYT_RS14135		+0.9	5.8	phosphate transporter permease subunit PtsA
BPHYT_RS26390		+0.9	0.8	antibiotic resistance protein
BPHYT_RS18270		+0.9	5.0	phenylacetic acid degradation protein
BPHYT_RS12990		+0.9	1.4	iron transporter
BPHYT_RS04385		+0.9	1.5	nucleoside-diphosphate sugar oxidoreductase
BPHYT_RS08510		+0.9	1.5	acyl-CoA dehydrogenase
BPHYT_RS12230		+0.9	2.3	hypothetical protein
BPHYT_RS19770		+0.9	3.3	ArsR family transcriptional regulator
BPHYT_RS33695		+0.9	1.2	molybdenum ABC transporter ATPase
BPHYT_RS11825		+0.9	0.7	cytosine deaminase
BPHYT_RS03455		+0.9	2.3	paraquat-inducible protein A
BPHYT_RS23035		+0.9	2.1	hypothetical protein
BPHYT_RS17035		+0.9	0.8	sugar kinase
BPHYT_RS06840		+0.9	1.9	hypothetical protein
BPHYT_RS02685		+0.9	3.8	cytochrome C oxidase subunit I
BPHYT_RS35550		+0.9	1.3	nitrile hydratase
BPHYT_RS10400		+0.9	0.9	taurine ABC transporter permease
BPHYT_RS30720		+0.9	0.8	hypothetical protein
BPHYT_RS11170		+0.9	0.6	hypothetical protein
BPHYT_RS02665		+0.9	5.6	MFS transporter
BPHYT_RS34295		+0.9	1.0	fimbrial protein
BPHYT_RS17885		+0.9	2.7	3-dehydroquinate synthase
BPHYT_RS06390		+0.9	2.0	ribosome-associated protein IOJAP
BPHYT_RS15305		+0.9	3.9	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
BPHYT_RS05025		+0.9	1.0	sugar ABC transporter substrate-binding protein
BPHYT_RS30045		+0.9	1.8	ATPase AAA
BPHYT_RS14845		+0.9	0.5	cysteine synthase
BPHYT_RS34680		+0.9	2.5	hypothetical protein
BPHYT_RS22300		+0.8	0.9	hypothetical protein
BPHYT_RS30085		+0.8	0.8	hypothetical protein
BPHYT_RS33390		+0.8	1.7	phosphate ABC transporter substrate-binding protein
BPHYT_RS15865		+0.8	1.2	exodeoxyribonuclease VII large subunit
BPHYT_RS08455		+0.8	5.5	ribonuclease R
BPHYT_RS23535		+0.8	1.4	ABC transporter substrate-binding protein
BPHYT_RS04140		+0.8	2.9	polysaccharide biosynthesis protein
BPHYT_RS11060		+0.8	1.1	4-hydroxybenzoate 3-monooxygenase
BPHYT_RS11895		+0.8	2.4	peroxiredoxin
BPHYT_RS26975		+0.8	1.2	L-lactate dehydrogenase, LldE subunit (from data)
BPHYT_RS19940		+0.8	2.8	hypothetical protein
BPHYT_RS28520		+0.8	1.8	hypothetical protein
BPHYT_RS01620		+0.8	4.0	sensor histidine kinase
BPHYT_RS07925		+0.8	1.9	glutamine amidotransferase
BPHYT_RS30465		+0.8	1.1	short-chain dehydrogenase
BPHYT_RS23390		+0.8	1.6	hypothetical protein
BPHYT_RS27890		+0.8	0.4	hypothetical protein
BPHYT_RS33885		+0.8	6.2	tRNA pseudouridine synthase A
BPHYT_RS02560		+0.8	4.2	glutathione synthetase
BPHYT_RS09825		+0.8	0.9	Fe-S protein

Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments