Experiment set39S349 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS11705		+3.5	2.6	hypothetical protein
BPHYT_RS14140		+3.3	6.4	phosphate transporter permease subunit PstC
BPHYT_RS33820		+3.1	29.7	histidine kinase
BPHYT_RS19565		+3.1	20.0	gamma-glutamyl:cysteine ligase
BPHYT_RS19570		+3.0	24.6	sodium/hydrogen exchanger
BPHYT_RS33920		+2.6	19.0	type II citrate synthase
BPHYT_RS02905		+2.5	23.0	RNA polymerase subunit sigma-54
BPHYT_RS09330		+2.5	23.0	phytoene synthase
BPHYT_RS14400		+2.5	6.8	anti-sigma factor
BPHYT_RS12845		+2.5	19.2	ATPase
BPHYT_RS09500		+2.4	10.1	glucose-6-phosphate isomerase
BPHYT_RS05575		+2.4	20.7	Fis family transcriptional regulator
BPHYT_RS04945		+2.4	20.9	membrane protein
BPHYT_RS25935		+2.3	1.6	type III secretion protein
BPHYT_RS06075		+2.3	14.8	hypothetical protein
BPHYT_RS23910		+2.2	4.3	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS02595		+2.2	3.9	sulfurtransferase
BPHYT_RS04950		+2.2	16.2	hypothetical protein
BPHYT_RS05560		+2.1	9.5	Fis family transcriptional regulator
BPHYT_RS12725		+2.1	18.4	regulator
BPHYT_RS05590		+2.0	17.5	trehalose-6-phosphate synthase
BPHYT_RS13645		+2.0	17.1	threonine--tRNA ligase
BPHYT_RS06985		+2.0	16.7	fumarate hydratase
BPHYT_RS05155		+1.9	12.3	acetyltransferase GCN5
BPHYT_RS06175		+1.9	5.4	LPS biosynthesis
BPHYT_RS04285		+1.9	1.0	rhamnosyltransferase
BPHYT_RS04940		+1.9	3.5	hypothetical protein
BPHYT_RS35310		+1.8	2.3	GCN5 family N-acetyltransferase
BPHYT_RS14395		+1.8	8.0	sugar dehydratase
BPHYT_RS06530		+1.8	2.5	membrane protein
BPHYT_RS07960		+1.8	2.2	hypothetical protein
BPHYT_RS12150		+1.8	11.4	PII uridylyl-transferase
BPHYT_RS07840		+1.7	2.7	muconate cycloisomerase
BPHYT_RS30995		+1.7	0.8	glucose-1-phosphate thymidylyltransferase
BPHYT_RS05025		+1.7	2.0	sugar ABC transporter substrate-binding protein
BPHYT_RS03725		+1.7	1.2	serine hydroxymethyltransferase
BPHYT_RS12900		+1.7	1.9	transposase
BPHYT_RS08945		+1.7	14.4	hypothetical protein
BPHYT_RS14145		+1.7	7.4	phosphate ABC transporter substrate-binding protein
BPHYT_RS09660		+1.7	8.9	trehalose-6-phosphate synthase
BPHYT_RS12840		+1.6	4.9	pyruvate dehydrogenase
BPHYT_RS02435		+1.6	1.7	hypothetical protein
BPHYT_RS28595		+1.6	1.7	glyoxalase
BPHYT_RS26300		+1.5	2.1	ATP-dependent DNA ligase
BPHYT_RS28470		+1.5	1.6	hypothetical protein
BPHYT_RS25970		+1.5	1.1	urea amidolyase
BPHYT_RS04290		+1.5	0.8	glycosyl transferase family 2
BPHYT_RS25565		+1.5	2.5	hypothetical protein
BPHYT_RS07255		+1.5	2.6	4-oxalocrotonate decarboxylase
BPHYT_RS01455		+1.5	1.6	peptide deformylase
BPHYT_RS12465		+1.4	2.5	inositol monophosphatase
BPHYT_RS16390		+1.4	4.9	MarR family transcriptional regulator
BPHYT_RS04965		+1.4	6.7	ATP-binding protein
BPHYT_RS18655		+1.4	4.0	3-oxoacyl-ACP synthase
BPHYT_RS20440		+1.4	1.4	IclR family transcriptional regulator
BPHYT_RS04370		+1.4	0.4	glycosyl transferase
BPHYT_RS14855		+1.4	0.5	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS16840		+1.4	2.9	transketolase
BPHYT_RS13200		+1.4	2.3	molybdopterin binding oxidoreductase
BPHYT_RS08850		+1.4	0.6	transcriptional regulator
BPHYT_RS21025		+1.4	1.6	cation-binding protein
BPHYT_RS24095		+1.4	3.4	membrane protein
BPHYT_RS18635		+1.3	3.2	LamB/YcsF family protein
BPHYT_RS26770		+1.3	2.7	histidine kinase
BPHYT_RS02640		+1.3	9.3	cytochrome C oxidase
BPHYT_RS00920		+1.3	3.3	transposase
BPHYT_RS03455		+1.3	2.1	paraquat-inducible protein A
BPHYT_RS22835		+1.3	1.1	flagellar motor protein MotA
BPHYT_RS02975		+1.3	1.6	membrane protein
BPHYT_RS06350		+1.3	1.2	chemotaxis protein CheY
BPHYT_RS02525		+1.3	6.6	membrane protein
BPHYT_RS29410		+1.3	5.9	HPr kinase
BPHYT_RS15620		+1.3	3.6	peptidyl-prolyl cis-trans isomerase
BPHYT_RS05615		+1.3	1.3	hypothetical protein
BPHYT_RS06065		+1.3	7.0	cytochrome C
BPHYT_RS06375		+1.3	2.6	ribonuclease
BPHYT_RS12290		+1.3	2.6	universal stress protein UspA
BPHYT_RS11815		+1.3	1.9	alcohol dehydrogenase
BPHYT_RS26930		+1.2	5.9	mechanosensitive ion channel protein
BPHYT_RS00295		+1.2	3.2	hypothetical protein
BPHYT_RS12590		+1.2	1.5	dual-specificity RNA methyltransferase RlmN
BPHYT_RS09640		+1.2	4.7	DNAase
BPHYT_RS17920		+1.2	1.7	protein CyaY
BPHYT_RS15325		+1.2	3.1	ribonuclease PH
BPHYT_RS31615		+1.2	1.6	thiamine pyrophosphate protein
BPHYT_RS14845		+1.2	0.8	cysteine synthase
BPHYT_RS34185		+1.2	4.8	cold-shock protein
BPHYT_RS04140		+1.2	3.7	polysaccharide biosynthesis protein
BPHYT_RS16335		+1.2	3.0	membrane protein
BPHYT_RS06390		+1.2	2.8	ribosome-associated protein IOJAP
BPHYT_RS03625		+1.2	4.5	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS02650		+1.2	2.9	membrane protein
BPHYT_RS14485		+1.2	4.2	ribonuclease E
BPHYT_RS02865		+1.2	0.7	hypothetical protein
BPHYT_RS11555		+1.1	2.4	allantoinase
BPHYT_RS34025		+1.1	1.4	hypothetical protein
BPHYT_RS27330		+1.1	1.3	hypothetical protein
BPHYT_RS07570		+1.1	1.1	hypothetical protein
BPHYT_RS27195		+1.1	5.9	LacI family transcriptional regulator
BPHYT_RS16345		+1.1	2.7	succinyl-CoA ligase [ADP-forming] subunit beta
BPHYT_RS06070		+1.1	7.9	cytochrome C
BPHYT_RS28670		+1.1	1.4	MFS transporter
BPHYT_RS29855		+1.1	1.1	protein-tyrosine-phosphatase
BPHYT_RS02635		+1.1	5.9	membrane protein
BPHYT_RS29570		+1.1	4.2	ABC transporter
BPHYT_RS17035		+1.1	1.1	sugar kinase
BPHYT_RS09145		+1.1	6.7	poly-beta-hydroxybutyrate polymerase
BPHYT_RS33850		+1.1	0.7	sporulation protein
BPHYT_RS30780		+1.1	2.1	GMC family oxidoreductase
BPHYT_RS22055		+1.1	2.8	DNA-binding protein
BPHYT_RS16060		+1.1	2.6	ribonucleotide-diphosphate reductase subunit alpha
BPHYT_RS33695		+1.1	1.5	molybdenum ABC transporter ATPase
BPHYT_RS26975		+1.1	1.1	L-lactate dehydrogenase, LldE subunit (from data)
BPHYT_RS30485		+1.1	1.3	ABC transporter ATP-binding protein
BPHYT_RS08995		+1.1	0.9	hypothetical protein
BPHYT_RS10830		+1.1	2.1	carbon monoxide dehydrogenase
BPHYT_RS34035		+1.1	2.1	type II and III secretion system outermembrane protein, secretin
BPHYT_RS03620		+1.1	4.6	poly(A) polymerase
BPHYT_RS18600		+1.1	1.7	glutathione S-transferase
BPHYT_RS10215		+1.0	0.8	sulfate transporter
BPHYT_RS02665		+1.0	6.4	MFS transporter
BPHYT_RS26780		+1.0	5.0	chemotaxis protein CheR
BPHYT_RS02540		+1.0	2.2	hypothetical protein
BPHYT_RS06910		+1.0	2.8	membrane protein
BPHYT_RS14135		+1.0	3.7	phosphate transporter permease subunit PtsA
BPHYT_RS16430		+1.0	8.9	cytochrome C
BPHYT_RS09815		+1.0	1.3	malate synthase
BPHYT_RS17885		+1.0	2.7	3-dehydroquinate synthase
BPHYT_RS16175		+1.0	0.5	hemolysin D
BPHYT_RS20725		+1.0	1.4	histidine kinase
BPHYT_RS27545		+1.0	2.8	histidine kinase
BPHYT_RS07480		+1.0	1.0	FAD-dependent oxidoreductase
BPHYT_RS20130		+1.0	2.1	diguanylate phosphodiesterase
BPHYT_RS17545		+1.0	4.0	cold-shock protein
BPHYT_RS14195		+1.0	1.5	carbamoyl phosphate synthase small subunit
BPHYT_RS17165		+1.0	1.9	cell division protein ZapD
BPHYT_RS28545		+1.0	1.4	acetamidase
BPHYT_RS21725		+1.0	1.6	taurine ABC transporter substrate-binding protein
BPHYT_RS21575		+1.0	2.4	hypothetical protein
BPHYT_RS01620		+1.0	4.1	sensor histidine kinase
BPHYT_RS23540		+1.0	2.8	RND transporter
BPHYT_RS34080		+1.0	2.1	flagellar motor protein MotB
BPHYT_RS10320		+1.0	2.0	hypothetical protein
BPHYT_RS21970		+1.0	1.1	nucleoside hydrolase
BPHYT_RS05395		+1.0	1.5	hypothetical protein
BPHYT_RS08125		+1.0	5.4	ATPase
BPHYT_RS21585		+1.0	2.5	short-chain dehydrogenase
BPHYT_RS21280		+1.0	2.8	hypothetical protein
BPHYT_RS24580		+1.0	1.4	hypothetical protein
BPHYT_RS15335		+1.0	6.7	coproporphyrinogen III oxidase
BPHYT_RS14895		+1.0	1.5	3-phosphoshikimate 1-carboxyvinyltransferase
BPHYT_RS30750		+0.9	0.9	GntR family transcriptional regulator
BPHYT_RS16435		+0.9	7.2	alcohol dehydrogenase
BPHYT_RS11040		+0.9	1.5	GntR family transcriptional regulator
BPHYT_RS34485		+0.9	2.1	diguanylate phosphodiesterase
BPHYT_RS11685		+0.9	0.7	phasin family protein
BPHYT_RS15305		+0.9	3.6	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
BPHYT_RS09160		+0.9	4.4	polyhydroxyalkanoate synthesis repressor PhaR
BPHYT_RS05585		+0.9	3.4	hypothetical protein
BPHYT_RS25815		+0.9	1.3	deoxyribose-phosphate aldolase
BPHYT_RS21910		+0.9	1.7	ABC transporter permease
BPHYT_RS02725		+0.9	1.3	GntR family transcriptional regulator
BPHYT_RS02530		+0.9	4.7	hypothetical protein
BPHYT_RS12640		+0.9	4.4	phosphoesterase
BPHYT_RS22060		+0.9	7.9	amino acid transporter
BPHYT_RS35230		+0.9	1.4	type 11 methyltransferase
BPHYT_RS36540		+0.9	2.2	hypothetical protein
BPHYT_RS34320		+0.9	1.7	DNA-binding protein
BPHYT_RS20185		+0.9	1.3	sugar transferase
BPHYT_RS32960		+0.9	2.0	short-chain dehydrogenase
BPHYT_RS33810		+0.9	2.2	membrane protein
BPHYT_RS32145		+0.9	4.7	type IV secretory pathway protein VirD4
BPHYT_RS29110		+0.9	1.9	DNA-directed DNA polymerase
BPHYT_RS29620		+0.9	0.8	hypothetical protein
BPHYT_RS21215		+0.9	2.4	Crp/Fnr family transcriptional regulator
BPHYT_RS27560		+0.9	0.9	histidine kinase
BPHYT_RS14340		+0.9	5.9	Fis family transcriptional regulator
BPHYT_RS30415		+0.9	1.7	AraC family transcriptional regulator
BPHYT_RS26775		+0.9	1.1	chemotaxis protein CheB
BPHYT_RS28850		+0.9	2.0	hypothetical protein
BPHYT_RS33060		+0.9	1.1	hypothetical protein
BPHYT_RS16570		+0.9	1.0	glutathione S-transferase
BPHYT_RS04430		+0.9	0.8	amino acid ABC transporter ATPase
BPHYT_RS26740		+0.9	0.9	hypothetical protein
BPHYT_RS19785		+0.9	1.5	chemotaxis protein CheY
BPHYT_RS08130		+0.9	0.9	transposase
BPHYT_RS09270		+0.9	5.8	histidine kinase
BPHYT_RS22295		+0.9	1.2	LysR family transcriptional regulator
BPHYT_RS32540		+0.9	2.1	hypothetical protein
BPHYT_RS34850		+0.8	3.3	acylphosphatase
BPHYT_RS31505		+0.8	1.0	hypothetical protein
BPHYT_RS36140		+0.8	3.4	hypothetical protein
BPHYT_RS02035		+0.8	2.3	hypothetical protein
BPHYT_RS30865		+0.8	2.4	sugar ABC transporter ATP-binding protein
BPHYT_RS33885		+0.8	6.2	tRNA pseudouridine synthase A
BPHYT_RS21190		+0.8	2.4	phospholipase C
BPHYT_RS11150		+0.8	1.3	LysR family transcriptional regulator
BPHYT_RS02685		+0.8	4.2	cytochrome C oxidase subunit I
BPHYT_RS27735		+0.8	1.3	nitroreductase
BPHYT_RS34495		+0.8	2.1	phenol degradation protein meta

Specific Phenotypes

For 1 genes in this experiment