Experiment set39S348 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS14140		+3.6	5.6	phosphate transporter permease subunit PstC
BPHYT_RS16710		+3.4	1.6	LysR family transcriptional regulator
BPHYT_RS33820		+3.3	31.8	histidine kinase
BPHYT_RS11705		+3.3	2.7	hypothetical protein
BPHYT_RS19565		+3.2	16.1	gamma-glutamyl:cysteine ligase
BPHYT_RS19570		+3.2	27.5	sodium/hydrogen exchanger
BPHYT_RS25935		+2.8	1.7	type III secretion protein
BPHYT_RS02905		+2.8	24.6	RNA polymerase subunit sigma-54
BPHYT_RS05575		+2.7	23.5	Fis family transcriptional regulator
BPHYT_RS09500		+2.7	16.1	glucose-6-phosphate isomerase
BPHYT_RS12845		+2.7	22.0	ATPase
BPHYT_RS06075		+2.7	20.8	hypothetical protein
BPHYT_RS09330		+2.7	22.5	phytoene synthase
BPHYT_RS33920		+2.6	17.7	type II citrate synthase
BPHYT_RS02595		+2.6	3.2	sulfurtransferase
BPHYT_RS14400		+2.6	6.5	anti-sigma factor
BPHYT_RS06530		+2.5	2.6	membrane protein
BPHYT_RS04945		+2.5	21.0	membrane protein
BPHYT_RS18655		+2.4	12.8	3-oxoacyl-ACP synthase
BPHYT_RS05560		+2.4	10.7	Fis family transcriptional regulator
BPHYT_RS05155		+2.4	8.9	acetyltransferase GCN5
BPHYT_RS04950		+2.3	18.0	hypothetical protein
BPHYT_RS23910		+2.3	4.4	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS16065		+2.3	1.8	LacI family transcriptional regulator
BPHYT_RS04285		+2.3	1.2	rhamnosyltransferase
BPHYT_RS12725		+2.2	18.9	regulator
BPHYT_RS13645		+2.2	19.0	threonine--tRNA ligase
BPHYT_RS05590		+2.2	14.9	trehalose-6-phosphate synthase
BPHYT_RS06175		+2.2	3.7	LPS biosynthesis
BPHYT_RS13200		+2.2	3.0	molybdopterin binding oxidoreductase
BPHYT_RS12150		+2.2	13.4	PII uridylyl-transferase
BPHYT_RS04940		+2.1	3.3	hypothetical protein
BPHYT_RS14395		+2.1	8.2	sugar dehydratase
BPHYT_RS14855		+2.1	0.8	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS06985		+2.0	7.7	fumarate hydratase
BPHYT_RS08945		+1.9	16.1	hypothetical protein
BPHYT_RS34185		+1.9	5.2	cold-shock protein
BPHYT_RS14145		+1.9	8.6	phosphate ABC transporter substrate-binding protein
BPHYT_RS09660		+1.9	9.7	trehalose-6-phosphate synthase
BPHYT_RS12465		+1.8	3.5	inositol monophosphatase
BPHYT_RS15620		+1.8	4.9	peptidyl-prolyl cis-trans isomerase
BPHYT_RS04965		+1.8	9.8	ATP-binding protein
BPHYT_RS06190		+1.7	1.4	heptosyltransferase
BPHYT_RS32750		+1.7	2.2	lipoprotein
BPHYT_RS09815		+1.7	3.3	malate synthase
BPHYT_RS28670		+1.7	3.0	MFS transporter
BPHYT_RS16345		+1.7	5.7	succinyl-CoA ligase [ADP-forming] subunit beta
BPHYT_RS08850		+1.6	0.6	transcriptional regulator
BPHYT_RS32225		+1.6	3.1	hypothetical protein
BPHYT_RS31910		+1.6	1.4	hypothetical protein
BPHYT_RS14485		+1.5	4.5	ribonuclease E
BPHYT_RS08960		+1.5	0.8	threonine synthase
BPHYT_RS09160		+1.5	6.5	polyhydroxyalkanoate synthesis repressor PhaR
BPHYT_RS17640		+1.5	1.8	2-alkenal reductase
BPHYT_RS02435		+1.5	2.2	hypothetical protein
BPHYT_RS02640		+1.5	11.0	cytochrome C oxidase
BPHYT_RS06610		+1.5	1.7	triosephosphate isomerase
BPHYT_RS26390		+1.5	1.3	antibiotic resistance protein
BPHYT_RS09640		+1.5	5.6	DNAase
BPHYT_RS16335		+1.5	3.8	membrane protein
BPHYT_RS26930		+1.5	4.9	mechanosensitive ion channel protein
BPHYT_RS02525		+1.4	8.6	membrane protein
BPHYT_RS05615		+1.4	1.3	hypothetical protein
BPHYT_RS07840		+1.4	1.9	muconate cycloisomerase
BPHYT_RS17525		+1.4	2.0	glutaredoxin
BPHYT_RS19325		+1.4	2.8	glycine cleavage system H protein
BPHYT_RS12290		+1.4	2.9	universal stress protein UspA
BPHYT_RS04290		+1.4	0.6	glycosyl transferase family 2
BPHYT_RS21700		+1.4	2.5	phosphotransacetylase
BPHYT_RS10215		+1.4	1.1	sulfate transporter
BPHYT_RS02865		+1.4	0.8	hypothetical protein
BPHYT_RS05585		+1.4	5.3	hypothetical protein
BPHYT_RS07850		+1.4	3.1	catechol 1,2-dioxygenase
BPHYT_RS10320		+1.4	3.5	hypothetical protein
BPHYT_RS25980		+1.4	1.2	urea carboxylase
BPHYT_RS03620		+1.3	6.0	poly(A) polymerase
BPHYT_RS30085		+1.3	1.5	hypothetical protein
BPHYT_RS07255		+1.3	1.7	4-oxalocrotonate decarboxylase
BPHYT_RS35770		+1.3	1.6	glyoxalase
BPHYT_RS01455		+1.3	1.3	peptide deformylase
BPHYT_RS09145		+1.3	7.8	poly-beta-hydroxybutyrate polymerase
BPHYT_RS11555		+1.3	3.0	allantoinase
BPHYT_RS03625		+1.3	6.0	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS12840		+1.3	2.3	pyruvate dehydrogenase
BPHYT_RS31260		+1.3	1.6	histidine kinase
BPHYT_RS12590		+1.3	1.6	dual-specificity RNA methyltransferase RlmN
BPHYT_RS24500		+1.3	1.3	histidine kinase
BPHYT_RS32335		+1.2	2.5	AsnC family transcriptional regulator
BPHYT_RS02975		+1.2	1.4	membrane protein
BPHYT_RS31225		+1.2	1.7	D-alanyl-D-alanine dipeptidase
BPHYT_RS29695		+1.2	1.7	hypothetical protein
BPHYT_RS28065		+1.2	1.5	hypothetical protein
BPHYT_RS06070		+1.2	6.5	cytochrome C
BPHYT_RS16340		+1.2	4.1	succinyl-CoA synthetase subunit alpha
BPHYT_RS31615		+1.2	1.5	thiamine pyrophosphate protein
BPHYT_RS05330		+1.2	2.2	phosphohydrolase
BPHYT_RS33695		+1.2	1.6	molybdenum ABC transporter ATPase
BPHYT_RS03450		+1.2	3.8	paraquat-inducible protein A
BPHYT_RS20055		+1.2	3.2	hypothetical protein
BPHYT_RS02635		+1.2	6.1	membrane protein
BPHYT_RS02540		+1.2	2.5	hypothetical protein
BPHYT_RS17100		+1.2	4.1	RNA pyrophosphohydrolase
BPHYT_RS16840		+1.2	2.5	transketolase
BPHYT_RS16175		+1.2	0.6	hemolysin D
BPHYT_RS28350		+1.2	1.6	fatty acid desaturase
BPHYT_RS13040		+1.2	2.0	hypothetical protein
BPHYT_RS34025		+1.2	1.4	hypothetical protein
BPHYT_RS07960		+1.1	1.3	hypothetical protein
BPHYT_RS17890		+1.1	1.2	shikimate kinase
BPHYT_RS17545		+1.1	4.5	cold-shock protein
BPHYT_RS16390		+1.1	3.5	MarR family transcriptional regulator
BPHYT_RS06550		+1.1	1.4	acetolactate synthase
BPHYT_RS25970		+1.1	0.7	urea amidolyase
BPHYT_RS20380		+1.1	2.2	LysR family transcriptional regulator
BPHYT_RS34640		+1.1	2.3	TetR family transcriptional regulator
BPHYT_RS17035		+1.1	1.0	sugar kinase
BPHYT_RS33400		+1.1	2.2	magnesium transporter CorA
BPHYT_RS14845		+1.1	0.6	cysteine synthase
BPHYT_RS20185		+1.1	1.2	sugar transferase
BPHYT_RS06065		+1.1	4.8	cytochrome C
BPHYT_RS01620		+1.1	5.0	sensor histidine kinase
BPHYT_RS07860		+1.1	0.8	benzoate 1,2-dioxygenase subunit beta
BPHYT_RS26570		+1.1	1.0	5'-nucleotidase
BPHYT_RS08125		+1.1	6.3	ATPase
BPHYT_RS02530		+1.1	3.5	hypothetical protein
BPHYT_RS34300		+1.1	1.7	major facilitator transporter
BPHYT_RS04430		+1.1	1.0	amino acid ABC transporter ATPase
BPHYT_RS13885		+1.1	1.7	myo-inositol 2-dehydrogenase
BPHYT_RS10470		+1.1	1.9	hypothetical protein
BPHYT_RS15325		+1.1	2.4	ribonuclease PH
BPHYT_RS12050		+1.1	2.2	hypothetical protein
BPHYT_RS03455		+1.1	1.9	paraquat-inducible protein A
BPHYT_RS29230		+1.1	3.1	hypothetical protein
BPHYT_RS27370		+1.1	1.6	CoA transferase
BPHYT_RS09825		+1.1	1.7	Fe-S protein
BPHYT_RS30995		+1.0	0.4	glucose-1-phosphate thymidylyltransferase
BPHYT_RS03505		+1.0	1.7	FAD-binding protein
BPHYT_RS29645		+1.0	1.1	hypothetical protein
BPHYT_RS02660		+1.0	1.9	membrane protein
BPHYT_RS15335		+1.0	6.6	coproporphyrinogen III oxidase
BPHYT_RS11960		+1.0	0.7	MarR family transcriptional regulator
BPHYT_RS06375		+1.0	2.1	ribonuclease
BPHYT_RS04400		+1.0	1.1	Crp/Fnr family transcriptional regulator
BPHYT_RS35100		+1.0	1.9	ABC transporter substrate-binding protein
BPHYT_RS14135		+1.0	4.4	phosphate transporter permease subunit PtsA
BPHYT_RS29380		+1.0	1.5	hypothetical protein
BPHYT_RS02665		+1.0	6.2	MFS transporter
BPHYT_RS09390		+1.0	1.8	ABC transporter permease
BPHYT_RS32735		+1.0	2.0	hypothetical protein
BPHYT_RS22455		+1.0	0.7	phosphonate ABC transporter substrate-binding protein
BPHYT_RS02005		+1.0	1.3	diguanylate phosphodiesterase
BPHYT_RS18600		+1.0	1.5	glutathione S-transferase
BPHYT_RS36150		+1.0	1.9	hypothetical protein
BPHYT_RS06195		+1.0	1.1	membrane protein
BPHYT_RS28535		+1.0	0.9	response regulator receiver
BPHYT_RS01425		+1.0	2.3	3-phosphoglycerate dehydrogenase
BPHYT_RS03400		+1.0	0.4	ATP-dependent DNA helicase RecG
BPHYT_RS26300		+1.0	1.0	ATP-dependent DNA ligase
BPHYT_RS28410		+1.0	1.4	ubiquinol oxidase subunit II, cyanide insensitive
BPHYT_RS34770		+1.0	1.8	chemotaxis protein
BPHYT_RS14340		+1.0	6.2	Fis family transcriptional regulator
BPHYT_RS06435		+1.0	1.6	hypothetical protein
BPHYT_RS05795		+1.0	2.2	hypothetical protein
BPHYT_RS29110		+1.0	1.4	DNA-directed DNA polymerase
BPHYT_RS16430		+1.0	8.3	cytochrome C
BPHYT_RS34745		+1.0	1.0	hypothetical protein
BPHYT_RS08615		+1.0	1.7	hypothetical protein
BPHYT_RS11765		+1.0	0.6	polyamine ABC transporter permease
BPHYT_RS16880		+1.0	0.8	malic enzyme
BPHYT_RS21340		+1.0	1.9	2OG-Fe(II) oxygenase
BPHYT_RS04015		+1.0	1.4	glycosyl transferase
BPHYT_RS30880		+0.9	1.4	peptidase S13
BPHYT_RS14250		+0.9	5.5	glycosyl transferase
BPHYT_RS35480		+0.9	1.4	salicylyl-CoA 5-hydroxylase
BPHYT_RS28505		+0.9	1.6	5-deoxyglucuronate isomerase
BPHYT_RS07140		+0.9	1.4	hypothetical protein
BPHYT_RS11965		+0.9	2.7	alkylhydroperoxidase
BPHYT_RS16435		+0.9	7.2	alcohol dehydrogenase
BPHYT_RS21475		+0.9	1.2	hypothetical protein
BPHYT_RS23250		+0.9	0.7	hypothetical protein
BPHYT_RS03460		+0.9	4.3	mammalian cell entry protein
BPHYT_RS10915		+0.9	1.6	radical SAM protein
BPHYT_RS34665		+0.9	1.6	hypothetical protein
BPHYT_RS26780		+0.9	5.1	chemotaxis protein CheR
BPHYT_RS16245		+0.9	3.2	phosphoribosylaminoimidazole carboxylase
BPHYT_RS18255		+0.9	1.2	phenylacetate-CoA oxygenase subunit PaaB
BPHYT_RS15305		+0.9	3.7	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
BPHYT_RS05390		+0.9	1.7	isochorismatase
BPHYT_RS14380		+0.9	4.0	elongation factor 4
BPHYT_RS03725		+0.9	0.4	serine hydroxymethyltransferase
BPHYT_RS11815		+0.9	0.9	alcohol dehydrogenase
BPHYT_RS27895		+0.9	1.5	enoyl-CoA hydratase
BPHYT_RS09270		+0.9	4.8	histidine kinase
BPHYT_RS04750		+0.9	2.3	uroporphyrin-III C-methyltransferase
BPHYT_RS30365		+0.9	1.1	beta-lactamase
BPHYT_RS21950		+0.9	1.3	RND transporter
BPHYT_RS14130		+0.9	2.8	phosphate ABC transporter ATP-binding protein
BPHYT_RS02695		+0.9	4.7	photosynthetic protein synthase I
BPHYT_RS26285		+0.9	1.8	glycogen debranching protein
BPHYT_RS32165		+0.9	2.1	type IV secretion system protein VirB9

Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments