Experiment set39S343 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS11705		+4.4	2.9	hypothetical protein
BPHYT_RS19565		+4.1	22.2	gamma-glutamyl:cysteine ligase
BPHYT_RS19570		+4.1	34.5	sodium/hydrogen exchanger
BPHYT_RS04285		+3.8	2.1	rhamnosyltransferase
BPHYT_RS33820		+3.3	31.6	histidine kinase
BPHYT_RS06175		+3.2	13.4	LPS biosynthesis
BPHYT_RS09500		+3.2	12.4	glucose-6-phosphate isomerase
BPHYT_RS02595		+3.0	3.4	sulfurtransferase
BPHYT_RS14855		+2.8	1.2	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS18655		+2.8	10.2	3-oxoacyl-ACP synthase
BPHYT_RS33765		+2.7	2.1	membrane protein
BPHYT_RS05575		+2.6	19.7	Fis family transcriptional regulator
BPHYT_RS14400		+2.6	5.8	anti-sigma factor
BPHYT_RS33920		+2.6	17.4	type II citrate synthase
BPHYT_RS23910		+2.5	4.6	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS04370		+2.5	0.8	glycosyl transferase
BPHYT_RS25935		+2.4	1.7	type III secretion protein
BPHYT_RS06985		+2.4	13.8	fumarate hydratase
BPHYT_RS12845		+2.4	18.0	ATPase
BPHYT_RS16390		+2.4	9.1	MarR family transcriptional regulator
BPHYT_RS05610		+2.3	16.2	DNA-cytosine methyltransferase
BPHYT_RS02905		+2.3	20.5	RNA polymerase subunit sigma-54
BPHYT_RS05560		+2.2	12.0	Fis family transcriptional regulator
BPHYT_RS14140		+2.2	3.8	phosphate transporter permease subunit PstC
BPHYT_RS05025		+2.2	1.7	sugar ABC transporter substrate-binding protein
BPHYT_RS06530		+2.2	2.4	membrane protein
BPHYT_RS01455		+2.2	2.5	peptide deformylase
BPHYT_RS04945		+2.2	17.1	membrane protein
BPHYT_RS14395		+2.1	10.0	sugar dehydratase
BPHYT_RS09330		+2.1	17.6	phytoene synthase
BPHYT_RS13200		+2.1	4.7	molybdopterin binding oxidoreductase
BPHYT_RS12725		+2.0	17.1	regulator
BPHYT_RS10400		+2.0	2.1	taurine ABC transporter permease
BPHYT_RS16335		+2.0	5.5	membrane protein
BPHYT_RS04950		+2.0	14.0	hypothetical protein
BPHYT_RS06075		+2.0	16.6	hypothetical protein
BPHYT_RS05615		+2.0	1.5	hypothetical protein
BPHYT_RS20665		+1.9	1.3	LysR family transcriptional regulator
BPHYT_RS13645		+1.9	15.7	threonine--tRNA ligase
BPHYT_RS05155		+1.9	9.5	acetyltransferase GCN5
BPHYT_RS02650		+1.8	4.9	membrane protein
BPHYT_RS09815		+1.8	1.8	malate synthase
BPHYT_RS04940		+1.8	4.3	hypothetical protein
BPHYT_RS05590		+1.8	10.2	trehalose-6-phosphate synthase
BPHYT_RS31615		+1.8	1.7	thiamine pyrophosphate protein
BPHYT_RS28670		+1.7	2.0	MFS transporter
BPHYT_RS06390		+1.7	2.7	ribosome-associated protein IOJAP
BPHYT_RS07840		+1.7	1.3	muconate cycloisomerase
BPHYT_RS10065		+1.7	1.6	cytochrome C oxidase subunit I
BPHYT_RS08850		+1.7	0.7	transcriptional regulator
BPHYT_RS34185		+1.7	3.6	cold-shock protein
BPHYT_RS14135		+1.6	6.8	phosphate transporter permease subunit PtsA
BPHYT_RS14485		+1.6	3.1	ribonuclease E
BPHYT_RS02525		+1.6	6.8	membrane protein
BPHYT_RS33215		+1.6	2.6	glycosyltransferase
BPHYT_RS18635		+1.6	3.4	LamB/YcsF family protein
BPHYT_RS09660		+1.6	7.4	trehalose-6-phosphate synthase
BPHYT_RS28595		+1.6	1.6	glyoxalase
BPHYT_RS04315		+1.6	7.0	UDP-N-acetylglucosamine 2-epimerase
BPHYT_RS26775		+1.6	2.0	chemotaxis protein CheB
BPHYT_RS05670		+1.6	2.7	hypothetical protein
BPHYT_RS03625		+1.6	7.3	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS16290		+1.6	2.3	hypothetical protein
BPHYT_RS02435		+1.5	2.1	hypothetical protein
BPHYT_RS26930		+1.5	5.5	mechanosensitive ion channel protein
BPHYT_RS26135		+1.5	1.1	ABC transporter permease
BPHYT_RS25065		+1.5	2.3	glycine/betaine ABC transporter ATPase
BPHYT_RS16340		+1.5	6.3	succinyl-CoA synthetase subunit alpha
BPHYT_RS14145		+1.5	8.2	phosphate ABC transporter substrate-binding protein
BPHYT_RS03505		+1.5	2.7	FAD-binding protein
BPHYT_RS02640		+1.5	10.2	cytochrome C oxidase
BPHYT_RS25335		+1.5	0.8	hypothetical protein
BPHYT_RS04290		+1.4	0.7	glycosyl transferase family 2
BPHYT_RS34485		+1.4	2.3	diguanylate phosphodiesterase
BPHYT_RS02865		+1.4	0.9	hypothetical protein
BPHYT_RS09145		+1.4	8.4	poly-beta-hydroxybutyrate polymerase
BPHYT_RS26570		+1.4	1.3	5'-nucleotidase
BPHYT_RS33030		+1.4	1.6	hypothetical protein
BPHYT_RS16345		+1.4	4.0	succinyl-CoA ligase [ADP-forming] subunit beta
BPHYT_RS08945		+1.4	5.8	hypothetical protein
BPHYT_RS24095		+1.4	3.6	membrane protein
BPHYT_RS17640		+1.4	1.4	2-alkenal reductase
BPHYT_RS09755		+1.4	1.1	glycosyl transferase family 1
BPHYT_RS34400		+1.4	2.0	hypothetical protein
BPHYT_RS12150		+1.4	9.5	PII uridylyl-transferase
BPHYT_RS03620		+1.4	6.4	poly(A) polymerase
BPHYT_RS08995		+1.4	1.0	hypothetical protein
BPHYT_RS00350		+1.4	2.2	hypothetical protein
BPHYT_RS29410		+1.4	1.8	HPr kinase
BPHYT_RS17545		+1.3	5.2	cold-shock protein
BPHYT_RS09160		+1.3	4.7	polyhydroxyalkanoate synthesis repressor PhaR
BPHYT_RS09640		+1.3	5.0	DNAase
BPHYT_RS06195		+1.3	1.5	membrane protein
BPHYT_RS05330		+1.3	2.7	phosphohydrolase
BPHYT_RS16060		+1.3	2.2	ribonucleotide-diphosphate reductase subunit alpha
BPHYT_RS16175		+1.3	0.7	hemolysin D
BPHYT_RS27980		+1.3	2.8	ABC transporter substrate-binding protein
BPHYT_RS30995		+1.3	0.5	glucose-1-phosphate thymidylyltransferase
BPHYT_RS26685		+1.2	1.0	precorrin-8X methylmutase
BPHYT_RS09345		+1.2	3.1	TetR family transcriptional regulator
BPHYT_RS02635		+1.2	6.4	membrane protein
BPHYT_RS26780		+1.2	6.9	chemotaxis protein CheR
BPHYT_RS31060		+1.2	0.9	capsular polysaccharide biosynthesis protein
BPHYT_RS07255		+1.2	1.5	4-oxalocrotonate decarboxylase
BPHYT_RS10315		+1.2	2.2	MFS transporter
BPHYT_RS16570		+1.2	1.4	glutathione S-transferase
BPHYT_RS12465		+1.2	1.9	inositol monophosphatase
BPHYT_RS33390		+1.2	1.6	phosphate ABC transporter substrate-binding protein
BPHYT_RS12550		+1.2	0.7	GTP-binding protein HflX
BPHYT_RS18600		+1.2	1.8	glutathione S-transferase
BPHYT_RS34035		+1.2	1.6	type II and III secretion system outermembrane protein, secretin
BPHYT_RS06070		+1.2	7.6	cytochrome C
BPHYT_RS06190		+1.2	1.0	heptosyltransferase
BPHYT_RS08510		+1.2	1.6	acyl-CoA dehydrogenase
BPHYT_RS03455		+1.2	2.1	paraquat-inducible protein A
BPHYT_RS05570		+1.2	3.6	hypothetical protein
BPHYT_RS14340		+1.2	7.5	Fis family transcriptional regulator
BPHYT_RS32830		+1.2	2.2	AraC family transcriptional regulator
BPHYT_RS04340		+1.2	2.4	hypothetical protein
BPHYT_RS24270		+1.2	1.0	C4-dicarboxylate ABC transporter substrate-binding protein
BPHYT_RS07860		+1.2	1.0	benzoate 1,2-dioxygenase subunit beta
BPHYT_RS09765		+1.2	1.7	G-D-S-L family lipolytic protein
BPHYT_RS28620		+1.2	1.3	enoyl-CoA hydratase
BPHYT_RS32340		+1.2	2.0	LrgA family protein
BPHYT_RS14845		+1.1	0.7	cysteine synthase
BPHYT_RS14130		+1.1	2.5	phosphate ABC transporter ATP-binding protein
BPHYT_RS04820		+1.1	2.5	LysR family transcriptional regulator
BPHYT_RS24135		+1.1	2.2	alpha-dehydro-beta-deoxy-D-glucarate aldolase
BPHYT_RS20520		+1.1	1.6	transcriptional regulator
BPHYT_RS08525		+1.1	0.7	SAM-dependent methyltransferase
BPHYT_RS11535		+1.1	1.3	membrane protein
BPHYT_RS11480		+1.1	2.6	heme ABC transporter ATP-binding protein
BPHYT_RS06065		+1.1	4.8	cytochrome C
BPHYT_RS01965		+1.1	1.3	tRNA-Ala
BPHYT_RS25110		+1.1	1.6	sarcosine oxidase subunit delta
BPHYT_RS20055		+1.1	0.8	hypothetical protein
BPHYT_RS34680		+1.1	3.7	hypothetical protein
BPHYT_RS26955		+1.1	1.3	succinylglutamate desuccinylase
BPHYT_RS14660		+1.1	2.1	hypothetical protein
BPHYT_RS26040		+1.1	1.9	cysteine hydrolase
BPHYT_RS05695		+1.1	3.7	transcriptional regulator
BPHYT_RS17035		+1.1	0.7	sugar kinase
BPHYT_RS34495		+1.1	1.9	phenol degradation protein meta
BPHYT_RS00150		+1.1	1.9	DEAD/DEAH box helicase
BPHYT_RS01620		+1.1	4.2	sensor histidine kinase
BPHYT_RS06610		+1.1	1.2	triosephosphate isomerase
BPHYT_RS28285		+1.1	1.7	MFS transporter
BPHYT_RS02530		+1.1	3.6	hypothetical protein
BPHYT_RS29950		+1.1	1.3	hypothetical protein
BPHYT_RS28920		+1.1	1.1	cellulose synthase
BPHYT_RS04300		+1.1	5.9	family 2 glycosyl transferase
BPHYT_RS25005		+1.1	1.9	FMN reductase
BPHYT_RS30830		+1.1	2.3	MFS transporter
BPHYT_RS22835		+1.0	1.0	flagellar motor protein MotA
BPHYT_RS31525		+1.0	2.4	hypothetical protein
BPHYT_RS03460		+1.0	4.8	mammalian cell entry protein
BPHYT_RS20690		+1.0	1.9	ABC transporter permease
BPHYT_RS22265		+1.0	1.0	hypothetical protein
BPHYT_RS26975		+1.0	1.0	L-lactate dehydrogenase, LldE subunit (from data)
BPHYT_RS29320		+1.0	0.7	histidine kinase
BPHYT_RS05085		+1.0	3.2	LysR family transcriptional regulator
BPHYT_RS20105		+1.0	1.6	nitrate ABC transporter substrate-binding protein
BPHYT_RS08125		+1.0	6.1	ATPase
BPHYT_RS02665		+1.0	5.4	MFS transporter
BPHYT_RS20750		+1.0	0.8	LacI family transcriptional regulator
BPHYT_RS03450		+1.0	3.5	paraquat-inducible protein A
BPHYT_RS32495		+1.0	1.8	ABC transporter
BPHYT_RS22820		+1.0	1.6	hydrolase
BPHYT_RS00690		+1.0	0.7	transcriptional regulator
BPHYT_RS22870		+1.0	0.6	copper transporter
BPHYT_RS20085		+1.0	0.9	mannosyltransferase
BPHYT_RS20185		+1.0	1.4	sugar transferase
BPHYT_RS02685		+1.0	3.9	cytochrome C oxidase subunit I
BPHYT_RS02725		+1.0	2.0	GntR family transcriptional regulator
BPHYT_RS24510		+1.0	2.4	alkylphosphonate utilization protein
BPHYT_RS16210		+1.0	1.3	peptidase
BPHYT_RS20440		+1.0	0.8	IclR family transcriptional regulator
BPHYT_RS08885		+1.0	3.8	inorganic phosphate transporter
BPHYT_RS09645		+1.0	1.1	ankyrin
BPHYT_RS28985		+1.0	2.2	hypothetical protein
BPHYT_RS12635		+1.0	4.3	translation factor Sua5
BPHYT_RS03725		+1.0	0.4	serine hydroxymethyltransferase
BPHYT_RS04905		+1.0	2.5	quinol oxidase
BPHYT_RS31225		+1.0	1.5	D-alanyl-D-alanine dipeptidase
BPHYT_RS06510		+1.0	2.6	DeoR faimly transcriptional regulator
BPHYT_RS02410		+1.0	2.3	alpha/beta hydrolase
BPHYT_RS22190		+1.0	2.5	nucleoid-structuring protein H-NS
BPHYT_RS10570		+1.0	1.5	LysR family transcriptional regulator
BPHYT_RS17750		+1.0	6.7	VacJ family lipoprotein
BPHYT_RS03070		+1.0	3.0	LuxR family transcriptional regulator
BPHYT_RS05840		+0.9	2.1	hypothetical protein
BPHYT_RS29620		+0.9	0.8	hypothetical protein
BPHYT_RS11080		+0.9	0.9	hypothetical protein
BPHYT_RS30485		+0.9	1.0	ABC transporter ATP-binding protein
BPHYT_RS09390		+0.9	1.3	ABC transporter permease
BPHYT_RS19325		+0.9	1.2	glycine cleavage system H protein
BPHYT_RS09850		+0.9	1.4	molybdopterin oxidoreductase
BPHYT_RS05020		+0.9	2.6	glucose-6-phosphate 1-dehydrogenase
BPHYT_RS15620		+0.9	2.0	peptidyl-prolyl cis-trans isomerase
BPHYT_RS26025		+0.9	0.5	hypothetical protein

Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments