Experiment set39S336 for Burkholderia phytofirmans PsJN

Compare to:

36hr PHYTO1 MOI 1

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS11705 +2.9 2.5 hypothetical protein compare
BPHYT_RS19565 +2.6 20.5 gamma-glutamyl:cysteine ligase compare
BPHYT_RS14140 +2.6 5.2 phosphate transporter permease subunit PstC compare
BPHYT_RS19570 +2.6 21.3 sodium/hydrogen exchanger compare
BPHYT_RS33820 +2.5 24.4 histidine kinase compare
BPHYT_RS12925 +2.3 2.3 exodeoxyribonuclease III compare
BPHYT_RS12985 +2.1 2.7 amino acid acetyltransferase compare
BPHYT_RS09500 +2.0 5.7 glucose-6-phosphate isomerase compare
BPHYT_RS02905 +2.0 17.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS06530 +1.9 2.3 membrane protein compare
BPHYT_RS05575 +1.9 15.4 Fis family transcriptional regulator compare
BPHYT_RS09330 +1.9 16.6 phytoene synthase compare
BPHYT_RS30995 +1.8 1.0 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS27305 +1.8 2.1 hypothetical protein compare
BPHYT_RS04945 +1.8 15.4 membrane protein compare
BPHYT_RS25935 +1.8 1.4 type III secretion protein compare
BPHYT_RS12845 +1.7 13.6 ATPase compare
BPHYT_RS13645 +1.7 14.9 threonine--tRNA ligase compare
BPHYT_RS05590 +1.7 12.7 trehalose-6-phosphate synthase compare
BPHYT_RS05560 +1.7 8.0 Fis family transcriptional regulator compare
BPHYT_RS07840 +1.6 1.8 muconate cycloisomerase compare
BPHYT_RS04950 +1.5 10.5 hypothetical protein compare
BPHYT_RS27230 +1.5 1.8 hypothetical protein compare
BPHYT_RS14485 +1.5 6.8 ribonuclease E compare
BPHYT_RS06075 +1.5 6.3 hypothetical protein compare
BPHYT_RS12725 +1.5 10.5 regulator compare
BPHYT_RS01455 +1.5 1.8 peptide deformylase compare
BPHYT_RS09815 +1.5 2.2 malate synthase compare
BPHYT_RS33920 +1.5 9.5 type II citrate synthase compare
BPHYT_RS04965 +1.4 8.5 ATP-binding protein compare
BPHYT_RS23910 +1.4 3.0 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS09660 +1.4 8.5 trehalose-6-phosphate synthase compare
BPHYT_RS05610 +1.4 9.0 DNA-cytosine methyltransferase compare
BPHYT_RS33150 +1.4 1.8 beta-lactamase compare
BPHYT_RS26025 +1.4 0.9 hypothetical protein compare
BPHYT_RS22860 +1.3 1.8 chemotaxis protein CheY compare
BPHYT_RS05155 +1.3 9.7 acetyltransferase GCN5 compare
BPHYT_RS02435 +1.3 1.4 hypothetical protein compare
BPHYT_RS12150 +1.3 9.3 PII uridylyl-transferase compare
BPHYT_RS30265 +1.3 2.2 hypothetical protein compare
BPHYT_RS02640 +1.3 9.3 cytochrome C oxidase compare
BPHYT_RS23030 +1.2 2.1 gluconate 2-dehydrogenase compare
BPHYT_RS15320 +1.2 1.5 hypothetical protein compare
BPHYT_RS03620 +1.2 7.0 poly(A) polymerase compare
BPHYT_RS34185 +1.2 4.6 cold-shock protein compare
BPHYT_RS09640 +1.2 6.2 DNAase compare
BPHYT_RS28595 +1.2 1.3 glyoxalase compare
BPHYT_RS26675 +1.2 2.3 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS09280 +1.2 1.0 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS10850 +1.2 0.9 LysR family transcriptional regulator compare
BPHYT_RS04940 +1.2 1.6 hypothetical protein compare
BPHYT_RS14395 +1.2 5.5 sugar dehydratase compare
BPHYT_RS20095 +1.2 1.3 transcriptional regulator compare
BPHYT_RS08945 +1.2 7.4 hypothetical protein compare
BPHYT_RS26435 +1.2 1.7 hypothetical protein compare
BPHYT_RS10040 +1.2 1.5 hypothetical protein compare
BPHYT_RS08850 +1.2 0.6 transcriptional regulator compare
BPHYT_RS31225 +1.2 2.8 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS14855 +1.2 0.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS11960 +1.2 0.9 MarR family transcriptional regulator compare
BPHYT_RS30610 +1.2 1.6 major facilitator transporter compare
BPHYT_RS20845 +1.1 2.1 peroxidase compare
BPHYT_RS28965 +1.1 1.6 hypothetical protein compare
BPHYT_RS05670 +1.1 2.2 hypothetical protein compare
BPHYT_RS02595 +1.1 2.8 sulfurtransferase compare
BPHYT_RS20185 +1.1 1.7 sugar transferase compare
BPHYT_RS05025 +1.1 1.8 sugar ABC transporter substrate-binding protein compare
BPHYT_RS18655 +1.1 4.4 3-oxoacyl-ACP synthase compare
BPHYT_RS14145 +1.1 5.6 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS14135 +1.1 6.8 phosphate transporter permease subunit PtsA compare
BPHYT_RS20115 +1.1 1.5 transcriptional regulator compare
BPHYT_RS14895 +1.1 1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS06065 +1.1 6.0 cytochrome C compare
BPHYT_RS05455 +1.1 1.7 AraC family transcriptional regulator compare
BPHYT_RS30890 +1.1 1.9 hypothetical protein compare
BPHYT_RS10145 +1.1 2.8 Mn-containing catalase compare
BPHYT_RS25980 +1.1 1.0 urea carboxylase compare
BPHYT_RS06175 +1.1 2.7 LPS biosynthesis compare
BPHYT_RS17100 +1.1 4.1 RNA pyrophosphohydrolase compare
BPHYT_RS03455 +1.0 2.2 paraquat-inducible protein A compare
BPHYT_RS19895 +1.0 2.6 rod shape-determining protein RodA compare
BPHYT_RS12840 +1.0 2.3 pyruvate dehydrogenase compare
BPHYT_RS19920 +1.0 1.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS25560 +1.0 2.2 RNA polymerase sigma factor compare
BPHYT_RS27495 +1.0 0.8 hypothetical protein compare
BPHYT_RS02635 +1.0 6.2 membrane protein compare
BPHYT_RS31615 +1.0 1.5 thiamine pyrophosphate protein compare
BPHYT_RS17885 +1.0 2.9 3-dehydroquinate synthase compare
BPHYT_RS12635 +1.0 2.8 translation factor Sua5 compare
BPHYT_RS28985 +1.0 4.4 hypothetical protein compare
BPHYT_RS07325 +1.0 0.5 GntR family transcriptional regulator compare
BPHYT_RS27060 +1.0 1.1 photosystem reaction center subunit H compare
BPHYT_RS14195 +1.0 1.5 carbamoyl phosphate synthase small subunit compare
BPHYT_RS34085 +1.0 1.5 polyamine ABC transporter permease compare
BPHYT_RS20150 +1.0 2.6 glycosyl transferase family 1 compare
BPHYT_RS11815 +1.0 1.4 alcohol dehydrogenase compare
BPHYT_RS04290 +1.0 0.6 glycosyl transferase family 2 compare
BPHYT_RS02865 +1.0 0.6 hypothetical protein compare
BPHYT_RS17095 +1.0 3.5 proline--tRNA ligase compare
BPHYT_RS34495 +1.0 2.7 phenol degradation protein meta compare
BPHYT_RS10635 +1.0 1.2 transcriptional regulator compare
BPHYT_RS05615 +1.0 0.9 hypothetical protein compare
BPHYT_RS27195 +1.0 2.2 LacI family transcriptional regulator compare
BPHYT_RS28670 +1.0 1.4 MFS transporter compare
BPHYT_RS25470 +1.0 0.8 alkylhydroperoxidase compare
BPHYT_RS33390 +1.0 2.0 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS18600 +1.0 1.8 glutathione S-transferase compare
BPHYT_RS14400 +1.0 3.0 anti-sigma factor compare
BPHYT_RS13200 +1.0 1.9 molybdopterin binding oxidoreductase compare
BPHYT_RS36050 +1.0 3.3 hypothetical protein compare
BPHYT_RS01745 +1.0 2.8 carbon monoxide dehydrogenase subunit G compare
BPHYT_RS01960 +1.0 4.9 cytochrome C compare
BPHYT_RS05330 +1.0 2.1 phosphohydrolase compare
BPHYT_RS23315 +1.0 1.2 hypothetical protein compare
BPHYT_RS17240 +1.0 0.5 cell division protein FtsW compare
BPHYT_RS06985 +1.0 6.9 fumarate hydratase compare
BPHYT_RS23890 +1.0 1.6 MFS transporter compare
BPHYT_RS34445 +1.0 2.7 GntR family transcriptional regulator compare
BPHYT_RS03215 +0.9 1.8 TetR family transcriptional regulator compare
BPHYT_RS29110 +0.9 1.9 DNA-directed DNA polymerase compare
BPHYT_RS23880 +0.9 1.3 sugar ABC transporter permease compare
BPHYT_RS04285 +0.9 0.5 rhamnosyltransferase compare
BPHYT_RS34035 +0.9 2.2 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS30465 +0.9 1.2 short-chain dehydrogenase compare
BPHYT_RS34485 +0.9 2.2 diguanylate phosphodiesterase compare
BPHYT_RS24175 +0.9 1.5 C4-dicarboxylate ABC transporter compare
BPHYT_RS16570 +0.9 1.3 glutathione S-transferase compare
BPHYT_RS01340 +0.9 1.1 ChrB domain-containing protein compare
BPHYT_RS25340 +0.9 1.2 sulfatase compare
BPHYT_RS03625 +0.9 4.8 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS33610 +0.9 1.1 DNA polymerase I compare
BPHYT_RS24135 +0.9 1.7 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS02525 +0.9 4.9 membrane protein compare
BPHYT_RS07570 +0.9 1.0 hypothetical protein compare
BPHYT_RS20715 +0.9 1.3 peptidase compare
BPHYT_RS25575 +0.9 1.0 alpha/beta hydrolase compare
BPHYT_RS26770 +0.9 4.0 histidine kinase compare
BPHYT_RS14755 +0.9 2.5 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS00295 +0.9 2.5 hypothetical protein compare
BPHYT_RS22810 +0.9 0.8 biopolymer transporter ExbB compare
BPHYT_RS06975 +0.9 0.8 glutamate racemase compare
BPHYT_RS16710 +0.9 0.4 LysR family transcriptional regulator compare
BPHYT_RS05585 +0.9 3.6 hypothetical protein compare
BPHYT_RS21970 +0.9 1.5 nucleoside hydrolase compare
BPHYT_RS33965 +0.9 1.7 methylcitrate synthase compare
BPHYT_RS07255 +0.9 1.2 4-oxalocrotonate decarboxylase compare
BPHYT_RS09445 +0.9 2.3 trigger factor compare
BPHYT_RS32435 +0.9 1.7 formate dehydrogenase-N subunit beta compare
BPHYT_RS11420 +0.9 1.1 alpha/beta hydrolase compare
BPHYT_RS06150 +0.9 3.0 aldehyde dehydrogenase compare
BPHYT_RS23250 +0.9 0.8 hypothetical protein compare
BPHYT_RS17945 +0.9 2.3 cytochrome C biogenesis protein compare
BPHYT_RS01435 +0.9 8.2 LysR family transcriptional regulator compare
BPHYT_RS21665 +0.9 2.0 hypothetical protein compare
BPHYT_RS22485 +0.9 1.8 NADP-dependent aryl-alcohol dehydrogenase compare
BPHYT_RS15145 +0.9 1.1 3-oxoacyl-ACP synthase compare
BPHYT_RS31525 +0.9 2.7 hypothetical protein compare
BPHYT_RS07835 +0.9 1.6 muconolactone delta-isomerase compare
BPHYT_RS17640 +0.9 0.8 2-alkenal reductase compare
BPHYT_RS16175 +0.9 0.5 hemolysin D compare
BPHYT_RS02860 +0.9 0.5 membrane protein compare
BPHYT_RS26290 +0.9 1.2 photosystem reaction center subunit H compare
BPHYT_RS29850 +0.9 1.0 protein tyrosine kinase compare
BPHYT_RS33695 +0.9 1.7 molybdenum ABC transporter ATPase compare
BPHYT_RS20055 +0.8 1.3 hypothetical protein compare
BPHYT_RS36590 +0.8 1.9 hypothetical protein compare
BPHYT_RS26080 +0.8 0.7 ABC transporter ATPase compare
BPHYT_RS08590 +0.8 1.9 hypothetical protein compare
BPHYT_RS27145 +0.8 2.1 TetR family transcriptional regulator compare
BPHYT_RS33110 +0.8 1.4 chloroperoxidase compare
BPHYT_RS02530 +0.8 5.8 hypothetical protein compare
BPHYT_RS08510 +0.8 1.6 acyl-CoA dehydrogenase compare
BPHYT_RS26930 +0.8 4.2 mechanosensitive ion channel protein compare
BPHYT_RS34025 +0.8 1.1 hypothetical protein compare
BPHYT_RS26775 +0.8 1.1 chemotaxis protein CheB compare
BPHYT_RS32525 +0.8 1.2 hypothetical protein compare
BPHYT_RS35100 +0.8 1.4 ABC transporter substrate-binding protein compare
BPHYT_RS03015 +0.8 1.0 aldolase compare
BPHYT_RS12785 +0.8 1.8 Rrf2 family transcriptional regulator compare
BPHYT_RS31910 +0.8 0.8 hypothetical protein compare
BPHYT_RS16430 +0.8 7.3 cytochrome C compare
BPHYT_RS21025 +0.8 1.0 cation-binding protein compare
BPHYT_RS31890 +0.8 1.3 transposase compare
BPHYT_RS21910 +0.8 2.0 ABC transporter permease compare
BPHYT_RS14130 +0.8 2.6 phosphate ABC transporter ATP-binding protein compare
BPHYT_RS17265 +0.8 1.0 cell division protein compare
BPHYT_RS10395 +0.8 1.3 sulfonate ABC transporter compare
BPHYT_RS12465 +0.8 1.1 inositol monophosphatase compare
BPHYT_RS29365 +0.8 1.2 ATP-NAD kinase compare
BPHYT_RS15305 +0.8 3.3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS09160 +0.8 3.6 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS17545 +0.8 3.4 cold-shock protein compare
BPHYT_RS23455 +0.8 0.8 phosphorylase compare
BPHYT_RS33400 +0.8 1.7 magnesium transporter CorA compare
BPHYT_RS02695 +0.8 3.4 photosynthetic protein synthase I compare
BPHYT_RS11060 +0.8 1.1 4-hydroxybenzoate 3-monooxygenase compare
BPHYT_RS26975 +0.8 0.8 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS01005 +0.8 3.2 alpha/beta hydrolase compare
BPHYT_RS04015 +0.8 1.7 glycosyl transferase compare
BPHYT_RS20155 +0.8 0.6 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments