Experiment set39S328 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS11705		+3.5	2.6	hypothetical protein
BPHYT_RS19570		+3.1	26.5	sodium/hydrogen exchanger
BPHYT_RS19565		+3.1	20.6	gamma-glutamyl:cysteine ligase
BPHYT_RS33820		+2.8	26.1	histidine kinase
BPHYT_RS14140		+2.7	5.8	phosphate transporter permease subunit PstC
BPHYT_RS14855		+2.3	1.1	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS02905		+2.3	20.4	RNA polymerase subunit sigma-54
BPHYT_RS25935		+2.2	1.7	type III secretion protein
BPHYT_RS04965		+2.2	12.9	ATP-binding protein
BPHYT_RS09330		+2.2	19.1	phytoene synthase
BPHYT_RS04945		+2.1	18.4	membrane protein
BPHYT_RS04950		+2.1	16.2	hypothetical protein
BPHYT_RS06075		+2.1	12.3	hypothetical protein
BPHYT_RS05575		+2.1	15.9	Fis family transcriptional regulator
BPHYT_RS06530		+2.0	2.3	membrane protein
BPHYT_RS12845		+2.0	15.5	ATPase
BPHYT_RS33920		+2.0	12.6	type II citrate synthase
BPHYT_RS05560		+2.0	13.9	Fis family transcriptional regulator
BPHYT_RS13645		+1.9	16.5	threonine--tRNA ligase
BPHYT_RS23910		+1.9	4.1	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS14400		+1.9	4.7	anti-sigma factor
BPHYT_RS12725		+1.8	15.9	regulator
BPHYT_RS02595		+1.8	2.7	sulfurtransferase
BPHYT_RS09500		+1.8	9.1	glucose-6-phosphate isomerase
BPHYT_RS05590		+1.8	14.7	trehalose-6-phosphate synthase
BPHYT_RS18655		+1.7	7.5	3-oxoacyl-ACP synthase
BPHYT_RS06985		+1.7	9.7	fumarate hydratase
BPHYT_RS08850		+1.7	0.9	transcriptional regulator
BPHYT_RS04290		+1.7	1.1	glycosyl transferase family 2
BPHYT_RS28470		+1.6	1.8	hypothetical protein
BPHYT_RS07840		+1.6	3.0	muconate cycloisomerase
BPHYT_RS02540		+1.6	4.0	hypothetical protein
BPHYT_RS26975		+1.6	2.1	L-lactate dehydrogenase, LldE subunit (from data)
BPHYT_RS16335		+1.5	4.3	membrane protein
BPHYT_RS05155		+1.5	8.3	acetyltransferase GCN5
BPHYT_RS09660		+1.5	9.0	trehalose-6-phosphate synthase
BPHYT_RS06175		+1.4	3.9	LPS biosynthesis
BPHYT_RS05610		+1.4	8.6	DNA-cytosine methyltransferase
BPHYT_RS08945		+1.4	8.7	hypothetical protein
BPHYT_RS16675		+1.4	1.6	dihydroorotase
BPHYT_RS02525		+1.4	7.7	membrane protein
BPHYT_RS12465		+1.4	3.1	inositol monophosphatase
BPHYT_RS04940		+1.4	3.0	hypothetical protein
BPHYT_RS27890		+1.4	0.7	hypothetical protein
BPHYT_RS27175		+1.4	1.7	DNA-binding protein
BPHYT_RS13200		+1.4	3.7	molybdopterin binding oxidoreductase
BPHYT_RS14145		+1.4	7.1	phosphate ABC transporter substrate-binding protein
BPHYT_RS17035		+1.4	1.6	sugar kinase
BPHYT_RS07960		+1.4	1.7	hypothetical protein
BPHYT_RS03455		+1.4	1.9	paraquat-inducible protein A
BPHYT_RS14395		+1.4	5.7	sugar dehydratase
BPHYT_RS12150		+1.4	10.2	PII uridylyl-transferase
BPHYT_RS16390		+1.3	4.7	MarR family transcriptional regulator
BPHYT_RS34295		+1.3	1.6	fimbrial protein
BPHYT_RS09815		+1.3	1.9	malate synthase
BPHYT_RS26080		+1.3	1.0	ABC transporter ATPase
BPHYT_RS28920		+1.3	1.6	cellulose synthase
BPHYT_RS32605		+1.3	1.9	hypothetical protein
BPHYT_RS14485		+1.3	5.2	ribonuclease E
BPHYT_RS29855		+1.3	1.4	protein-tyrosine-phosphatase
BPHYT_RS05615		+1.3	1.2	hypothetical protein
BPHYT_RS02640		+1.3	8.6	cytochrome C oxidase
BPHYT_RS01170		+1.2	2.1	hypothetical protein
BPHYT_RS25820		+1.2	2.1	sugar ABC transporter
BPHYT_RS26955		+1.2	1.7	succinylglutamate desuccinylase
BPHYT_RS06065		+1.2	6.3	cytochrome C
BPHYT_RS02650		+1.2	3.2	membrane protein
BPHYT_RS31615		+1.2	1.4	thiamine pyrophosphate protein
BPHYT_RS21460		+1.2	1.9	UDP-N-acetylglucosamine 2-epimerase
BPHYT_RS20725		+1.2	1.9	histidine kinase
BPHYT_RS05670		+1.2	2.3	hypothetical protein
BPHYT_RS30995		+1.2	0.5	glucose-1-phosphate thymidylyltransferase
BPHYT_RS06390		+1.1	2.1	ribosome-associated protein IOJAP
BPHYT_RS21495		+1.1	1.5	ABC transporter
BPHYT_RS07255		+1.1	2.3	4-oxalocrotonate decarboxylase
BPHYT_RS23540		+1.1	1.7	RND transporter
BPHYT_RS05705		+1.1	1.2	hypothetical protein
BPHYT_RS24500		+1.1	1.2	histidine kinase
BPHYT_RS06610		+1.1	1.0	triosephosphate isomerase
BPHYT_RS28670		+1.1	1.6	MFS transporter
BPHYT_RS28595		+1.1	1.2	glyoxalase
BPHYT_RS34185		+1.1	2.2	cold-shock protein
BPHYT_RS03620		+1.1	6.5	poly(A) polymerase
BPHYT_RS26675		+1.1	1.9	precorrin-6Y C5,15-methyltransferase
BPHYT_RS02635		+1.1	6.2	membrane protein
BPHYT_RS16840		+1.1	2.2	transketolase
BPHYT_RS05335		+1.1	2.6	AraC family transcriptional regulator
BPHYT_RS02865		+1.1	0.6	hypothetical protein
BPHYT_RS12635		+1.1	1.9	translation factor Sua5
BPHYT_RS02975		+1.1	1.3	membrane protein
BPHYT_RS10040		+1.1	1.2	hypothetical protein
BPHYT_RS22815		+1.0	1.8	TonB-denpendent receptor
BPHYT_RS16345		+1.0	2.9	succinyl-CoA ligase [ADP-forming] subunit beta
BPHYT_RS09640		+1.0	4.5	DNAase
BPHYT_RS04430		+1.0	1.5	amino acid ABC transporter ATPase
BPHYT_RS29250		+1.0	2.6	dihydrodipicolinate synthase
BPHYT_RS25645		+1.0	1.4	dehydrogenase
BPHYT_RS16430		+1.0	8.9	cytochrome C
BPHYT_RS12290		+1.0	1.6	universal stress protein UspA
BPHYT_RS26910		+1.0	2.0	hypothetical protein
BPHYT_RS16290		+1.0	1.5	hypothetical protein
BPHYT_RS04285		+1.0	0.5	rhamnosyltransferase
BPHYT_RS21475		+1.0	1.2	hypothetical protein
BPHYT_RS28410		+1.0	2.7	ubiquinol oxidase subunit II, cyanide insensitive
BPHYT_RS03625		+1.0	5.3	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS14130		+1.0	3.1	phosphate ABC transporter ATP-binding protein
BPHYT_RS16435		+1.0	7.8	alcohol dehydrogenase
BPHYT_RS06070		+1.0	6.3	cytochrome C
BPHYT_RS15865		+1.0	1.8	exodeoxyribonuclease VII large subunit
BPHYT_RS13835		+1.0	1.4	S-adenosylhomocysteine nucleosidase
BPHYT_RS26700		+1.0	3.4	hypothetical protein
BPHYT_RS17095		+1.0	2.5	proline--tRNA ligase
BPHYT_RS09160		+1.0	3.8	polyhydroxyalkanoate synthesis repressor PhaR
BPHYT_RS07705		+1.0	1.8	arginine succinyltransferase
BPHYT_RS25490		+1.0	2.3	hypothetical protein
BPHYT_RS07055		+1.0	1.7	sulfotransferase
BPHYT_RS18255		+1.0	2.2	phenylacetate-CoA oxygenase subunit PaaB
BPHYT_RS03410		+1.0	1.8	queuine tRNA-ribosyltransferase
BPHYT_RS17945		+1.0	2.4	cytochrome C biogenesis protein
BPHYT_RS31685		+1.0	1.3	D-isomer specific 2-hydroxyacid dehydrogenase
BPHYT_RS15290		+1.0	2.2	tRNA-Arg
BPHYT_RS23940		+0.9	0.5	GntR family transcriptional regulator
BPHYT_RS31205		+0.9	1.5	peptide ABC transporter ATP-binding protein
BPHYT_RS19325		+0.9	2.4	glycine cleavage system H protein
BPHYT_RS15335		+0.9	5.7	coproporphyrinogen III oxidase
BPHYT_RS01455		+0.9	1.0	peptide deformylase
BPHYT_RS07060		+0.9	2.2	aldo/keto reductase
BPHYT_RS26390		+0.9	0.8	antibiotic resistance protein
BPHYT_RS09980		+0.9	0.9	TetR family transcriptional regulator
BPHYT_RS14135		+0.9	3.2	phosphate transporter permease subunit PtsA
BPHYT_RS08985		+0.9	3.9	Rrf2 family transcriptional regulator
BPHYT_RS13890		+0.9	2.4	RpiR family transcriptional regulator
BPHYT_RS06975		+0.9	0.8	glutamate racemase
BPHYT_RS01340		+0.9	1.1	ChrB domain-containing protein
BPHYT_RS27390		+0.9	2.4	hydroxyacid dehydrogenase
BPHYT_RS09145		+0.9	6.1	poly-beta-hydroxybutyrate polymerase
BPHYT_RS16175		+0.9	0.5	hemolysin D
BPHYT_RS13110		+0.9	2.7	ABC transporter substrate-binding protein
BPHYT_RS10320		+0.9	2.2	hypothetical protein
BPHYT_RS32335		+0.9	1.6	AsnC family transcriptional regulator
BPHYT_RS02665		+0.9	5.9	MFS transporter
BPHYT_RS16060		+0.9	2.1	ribonucleotide-diphosphate reductase subunit alpha
BPHYT_RS34025		+0.9	1.1	hypothetical protein
BPHYT_RS02435		+0.9	0.9	hypothetical protein
BPHYT_RS23035		+0.9	1.7	hypothetical protein
BPHYT_RS28575		+0.9	0.8	transcriptional regulator
BPHYT_RS15415		+0.9	5.5	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
BPHYT_RS04015		+0.9	1.8	glycosyl transferase
BPHYT_RS22055		+0.9	2.3	DNA-binding protein
BPHYT_RS15620		+0.9	2.2	peptidyl-prolyl cis-trans isomerase
BPHYT_RS34485		+0.9	1.8	diguanylate phosphodiesterase
BPHYT_RS06350		+0.9	1.0	chemotaxis protein CheY
BPHYT_RS22835		+0.9	0.6	flagellar motor protein MotA
BPHYT_RS09695		+0.9	1.5	hypothetical protein
BPHYT_RS23975		+0.9	1.2	peroxidase
BPHYT_RS12990		+0.9	1.7	iron transporter
BPHYT_RS17545		+0.9	3.5	cold-shock protein
BPHYT_RS26930		+0.9	3.9	mechanosensitive ion channel protein
BPHYT_RS04625		+0.9	2.0	urea ABC transporter ATP-binding protein
BPHYT_RS34495		+0.9	1.9	phenol degradation protein meta
BPHYT_RS07300		+0.9	3.8	porin
BPHYT_RS03900		+0.9	1.3	phospholipid-binding protein
BPHYT_RS25020		+0.9	1.5	phospholipid-binding protein
BPHYT_RS35265		+0.9	3.9	LysR family transcriptional regulator
BPHYT_RS12640		+0.9	4.9	phosphoesterase
BPHYT_RS07145		+0.9	1.2	DNA-binding protein
BPHYT_RS34280		+0.9	1.4	hypothetical protein
BPHYT_RS10315		+0.9	2.0	MFS transporter
BPHYT_RS23895		+0.9	1.4	hypothetical protein
BPHYT_RS25575		+0.9	0.9	alpha/beta hydrolase
BPHYT_RS08125		+0.8	4.6	ATPase
BPHYT_RS04005		+0.8	1.5	GDP-L-fucose synthase
BPHYT_RS15305		+0.8	3.3	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
BPHYT_RS08510		+0.8	1.2	acyl-CoA dehydrogenase
BPHYT_RS10145		+0.8	2.6	Mn-containing catalase
BPHYT_RS22855		+0.8	1.7	aldehyde-activating protein
BPHYT_RS12815		+0.8	3.3	IclR family transcriptional regulator
BPHYT_RS28985		+0.8	1.9	hypothetical protein
BPHYT_RS04750		+0.8	2.2	uroporphyrin-III C-methyltransferase
BPHYT_RS07465		+0.8	2.1	FAD-dependent pyridine nucleotide-disulfide oxidoreductase
BPHYT_RS16210		+0.8	2.1	peptidase
BPHYT_RS34920		+0.8	1.1	IclR family transcriptional regulator
BPHYT_RS14340		+0.8	5.6	Fis family transcriptional regulator
BPHYT_RS15360		+0.8	1.4	hypothetical protein
BPHYT_RS23875		+0.8	0.9	sugar ABC transporter ATP-binding protein
BPHYT_RS25080		+0.8	0.9	glycine/betaine ABC transporter substrate-binding protein
BPHYT_RS14845		+0.8	0.5	cysteine synthase
BPHYT_RS28270		+0.8	2.5	ABC transporter substrate-binding protein
BPHYT_RS19915		+0.8	2.5	hemolysin D
BPHYT_RS23615		+0.8	2.1	XRE family transcriptional regulator
BPHYT_RS35115		+0.8	2.2	phospholipase C
BPHYT_RS08545		+0.8	0.8	oxidoreductase
BPHYT_RS14175		+0.8	2.1	RNA-binding protein
BPHYT_RS05395		+0.8	1.2	hypothetical protein
BPHYT_RS20220		+0.8	0.9	antibiotic synthesis protein MbtH
BPHYT_RS06605		+0.8	2.5	NAD(P)H quinone oxidoreductase
BPHYT_RS17725		+0.8	4.8	BolA family transcriptional regulator
BPHYT_RS32200		+0.8	1.3	lytic transglycosylase
BPHYT_RS31515		+0.8	1.7	agmatinase
BPHYT_RS15330		+0.8	4.2	nucleoside-triphosphate diphosphatase

Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments