Experiment set39S311 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS11705		+3.3	2.6	hypothetical protein
BPHYT_RS19565		+3.2	18.9	gamma-glutamyl:cysteine ligase
BPHYT_RS19570		+3.2	27.6	sodium/hydrogen exchanger
BPHYT_RS33820		+2.8	26.6	histidine kinase
BPHYT_RS27890		+2.7	1.7	hypothetical protein
BPHYT_RS02905		+2.4	21.4	RNA polymerase subunit sigma-54
BPHYT_RS05575		+2.3	19.4	Fis family transcriptional regulator
BPHYT_RS14140		+2.3	5.1	phosphate transporter permease subunit PstC
BPHYT_RS09330		+2.2	19.7	phytoene synthase
BPHYT_RS04945		+2.2	19.3	membrane protein
BPHYT_RS04950		+2.2	17.8	hypothetical protein
BPHYT_RS06075		+2.2	15.1	hypothetical protein
BPHYT_RS16675		+2.2	3.0	dihydroorotase
BPHYT_RS12550		+2.2	1.6	GTP-binding protein HflX
BPHYT_RS25935		+2.1	1.5	type III secretion protein
BPHYT_RS14400		+2.0	4.8	anti-sigma factor
BPHYT_RS33920		+2.0	13.5	type II citrate synthase
BPHYT_RS05560		+2.0	13.1	Fis family transcriptional regulator
BPHYT_RS04965		+2.0	14.6	ATP-binding protein
BPHYT_RS13645		+2.0	17.7	threonine--tRNA ligase
BPHYT_RS12845		+2.0	15.7	ATPase
BPHYT_RS05590		+1.9	15.1	trehalose-6-phosphate synthase
BPHYT_RS12725		+1.8	16.4	regulator
BPHYT_RS04940		+1.8	3.2	hypothetical protein
BPHYT_RS26975		+1.7	1.6	L-lactate dehydrogenase, LldE subunit (from data)
BPHYT_RS06985		+1.7	8.8	fumarate hydratase
BPHYT_RS02595		+1.7	2.6	sulfurtransferase
BPHYT_RS15320		+1.7	3.6	hypothetical protein
BPHYT_RS18655		+1.7	7.7	3-oxoacyl-ACP synthase
BPHYT_RS22835		+1.7	1.6	flagellar motor protein MotA
BPHYT_RS14395		+1.7	10.8	sugar dehydratase
BPHYT_RS05155		+1.7	7.2	acetyltransferase GCN5
BPHYT_RS26685		+1.6	1.7	precorrin-8X methylmutase
BPHYT_RS12465		+1.6	2.5	inositol monophosphatase
BPHYT_RS14485		+1.6	6.1	ribonuclease E
BPHYT_RS25095		+1.6	2.6	AraC family transcriptional regulator
BPHYT_RS23910		+1.6	3.9	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS09500		+1.6	5.7	glucose-6-phosphate isomerase
BPHYT_RS27330		+1.6	1.8	hypothetical protein
BPHYT_RS27060		+1.5	2.1	photosystem reaction center subunit H
BPHYT_RS09660		+1.5	8.4	trehalose-6-phosphate synthase
BPHYT_RS09650		+1.5	1.6	hypothetical protein
BPHYT_RS12150		+1.5	9.9	PII uridylyl-transferase
BPHYT_RS25875		+1.5	1.5	type III secretion protein
BPHYT_RS23455		+1.5	1.5	phosphorylase
BPHYT_RS08945		+1.4	11.0	hypothetical protein
BPHYT_RS23525		+1.4	1.6	hypothetical protein
BPHYT_RS10570		+1.4	2.8	LysR family transcriptional regulator
BPHYT_RS02640		+1.4	10.3	cytochrome C oxidase
BPHYT_RS02880		+1.4	1.1	ATP-dependent protease
BPHYT_RS16020		+1.4	3.1	AsnC family transcriptional regulator
BPHYT_RS09815		+1.4	2.8	malate synthase
BPHYT_RS14135		+1.4	5.1	phosphate transporter permease subunit PtsA
BPHYT_RS10215		+1.4	1.2	sulfate transporter
BPHYT_RS32495		+1.4	3.2	ABC transporter
BPHYT_RS28065		+1.4	2.1	hypothetical protein
BPHYT_RS13200		+1.4	2.4	molybdopterin binding oxidoreductase
BPHYT_RS08565		+1.4	0.8	dihydroorotate dehydrogenase
BPHYT_RS34920		+1.4	1.5	IclR family transcriptional regulator
BPHYT_RS28485		+1.4	0.8	GntR family transcriptional regulator
BPHYT_RS00705		+1.3	2.6	branched-chain amino acid ABC transporter substrate-binding protein
BPHYT_RS08960		+1.3	0.8	threonine synthase
BPHYT_RS08135		+1.3	2.4	hypothetical protein
BPHYT_RS14855		+1.3	0.5	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS07145		+1.3	1.9	DNA-binding protein
BPHYT_RS02435		+1.3	1.3	hypothetical protein
BPHYT_RS08850		+1.3	0.6	transcriptional regulator
BPHYT_RS03505		+1.3	2.3	FAD-binding protein
BPHYT_RS05610		+1.3	9.5	DNA-cytosine methyltransferase
BPHYT_RS10320		+1.3	5.7	hypothetical protein
BPHYT_RS31060		+1.3	1.2	capsular polysaccharide biosynthesis protein
BPHYT_RS30450		+1.3	1.0	ABC transporter permease
BPHYT_RS17095		+1.3	4.3	proline--tRNA ligase
BPHYT_RS00295		+1.3	3.8	hypothetical protein
BPHYT_RS07255		+1.2	3.1	4-oxalocrotonate decarboxylase
BPHYT_RS30020		+1.2	2.9	arsenic transporter
BPHYT_RS05615		+1.2	1.3	hypothetical protein
BPHYT_RS11765		+1.2	0.9	polyamine ABC transporter permease
BPHYT_RS14145		+1.2	7.0	phosphate ABC transporter substrate-binding protein
BPHYT_RS34185		+1.2	4.3	cold-shock protein
BPHYT_RS04005		+1.2	2.3	GDP-L-fucose synthase
BPHYT_RS16335		+1.2	3.1	membrane protein
BPHYT_RS11825		+1.2	0.9	cytosine deaminase
BPHYT_RS02525		+1.2	6.2	membrane protein
BPHYT_RS32225		+1.2	2.8	hypothetical protein
BPHYT_RS12985		+1.1	1.1	amino acid acetyltransferase
BPHYT_RS17035		+1.1	1.1	sugar kinase
BPHYT_RS05705		+1.1	1.2	hypothetical protein
BPHYT_RS06065		+1.1	6.3	cytochrome C
BPHYT_RS16430		+1.1	10.0	cytochrome C
BPHYT_RS02635		+1.1	6.3	membrane protein
BPHYT_RS10260		+1.1	1.9	hypothetical protein
BPHYT_RS06975		+1.1	1.1	glutamate racemase
BPHYT_RS03620		+1.1	5.7	poly(A) polymerase
BPHYT_RS04290		+1.1	0.6	glycosyl transferase family 2
BPHYT_RS07540		+1.1	0.9	hypothetical protein
BPHYT_RS19610		+1.1	1.2	general secretion pathway protein GspC
BPHYT_RS31615		+1.1	1.5	thiamine pyrophosphate protein
BPHYT_RS09645		+1.1	2.3	ankyrin
BPHYT_RS07570		+1.1	1.1	hypothetical protein
BPHYT_RS02865		+1.1	0.7	hypothetical protein
BPHYT_RS31685		+1.1	1.5	D-isomer specific 2-hydroxyacid dehydrogenase
BPHYT_RS17490		+1.1	1.6	haloacid dehalogenase
BPHYT_RS18635		+1.1	2.4	LamB/YcsF family protein
BPHYT_RS22540		+1.1	2.4	metal ABC transporter permease
BPHYT_RS03625		+1.1	5.7	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS08765		+1.1	1.1	ABC transporter ATP-binding protein
BPHYT_RS35215		+1.1	1.5	dehydrogenase
BPHYT_RS03830		+1.1	2.3	hypothetical protein
BPHYT_RS05650		+1.1	1.5	hypothetical protein
BPHYT_RS33175		+1.1	0.9	hypothetical protein
BPHYT_RS10400		+1.1	1.0	taurine ABC transporter permease
BPHYT_RS24270		+1.1	1.4	C4-dicarboxylate ABC transporter substrate-binding protein
BPHYT_RS03455		+1.1	1.6	paraquat-inducible protein A
BPHYT_RS31225		+1.1	1.7	D-alanyl-D-alanine dipeptidase
BPHYT_RS26775		+1.1	1.4	chemotaxis protein CheB
BPHYT_RS09640		+1.1	5.0	DNAase
BPHYT_RS16390		+1.1	3.4	MarR family transcriptional regulator
BPHYT_RS31245		+1.1	1.5	peptide ABC transporter ATP-binding protein
BPHYT_RS20115		+1.1	1.5	transcriptional regulator
BPHYT_RS16060		+1.1	2.1	ribonucleotide-diphosphate reductase subunit alpha
BPHYT_RS04285		+1.1	0.5	rhamnosyltransferase
BPHYT_RS06530		+1.0	1.3	membrane protein
BPHYT_RS05585		+1.0	4.0	hypothetical protein
BPHYT_RS28025		+1.0	0.9	3-hydroxyisobutyrate dehydrogenase
BPHYT_RS07840		+1.0	1.6	muconate cycloisomerase
BPHYT_RS23630		+1.0	1.7	hypothetical protein
BPHYT_RS13885		+1.0	1.0	myo-inositol 2-dehydrogenase
BPHYT_RS15335		+1.0	6.7	coproporphyrinogen III oxidase
BPHYT_RS17075		+1.0	2.1	ABC transporter permease
BPHYT_RS02540		+1.0	2.2	hypothetical protein
BPHYT_RS17525		+1.0	2.0	glutaredoxin
BPHYT_RS11895		+1.0	2.4	peroxiredoxin
BPHYT_RS02665		+1.0	6.6	MFS transporter
BPHYT_RS36440		+1.0	1.4	hypothetical protein
BPHYT_RS02650		+1.0	2.5	membrane protein
BPHYT_RS32525		+1.0	1.0	hypothetical protein
BPHYT_RS06070		+1.0	5.5	cytochrome C
BPHYT_RS29800		+1.0	0.8	hypothetical protein
BPHYT_RS14340		+1.0	7.2	Fis family transcriptional regulator
BPHYT_RS08525		+1.0	0.7	SAM-dependent methyltransferase
BPHYT_RS27270		+1.0	2.2	photosystem reaction center subunit H
BPHYT_RS25830		+1.0	2.0	sugar ABC transporter substrate-binding protein
BPHYT_RS16435		+1.0	7.8	alcohol dehydrogenase
BPHYT_RS25885		+1.0	1.5	type III secretion protein
BPHYT_RS18910		+1.0	0.9	FlgN
BPHYT_RS32675		+1.0	1.9	2-methylcitrate dehydratase
BPHYT_RS29320		+1.0	0.7	histidine kinase
BPHYT_RS11080		+1.0	1.8	hypothetical protein
BPHYT_RS16175		+1.0	0.6	hemolysin D
BPHYT_RS28670		+1.0	1.4	MFS transporter
BPHYT_RS07935		+1.0	1.7	Rrf2 family transcriptional regulator
BPHYT_RS02530		+1.0	4.8	hypothetical protein
BPHYT_RS07300		+1.0	2.7	porin
BPHYT_RS36435		+1.0	1.8	hypothetical protein
BPHYT_RS11040		+0.9	1.5	GntR family transcriptional regulator
BPHYT_RS06375		+0.9	2.0	ribonuclease
BPHYT_RS20105		+0.9	2.5	nitrate ABC transporter substrate-binding protein
BPHYT_RS14185		+0.9	1.0	transcription elongation factor GreA
BPHYT_RS04140		+0.9	2.4	polysaccharide biosynthesis protein
BPHYT_RS06175		+0.9	2.5	LPS biosynthesis
BPHYT_RS11555		+0.9	2.2	allantoinase
BPHYT_RS09465		+0.9	1.1	transcriptional regulator
BPHYT_RS32260		+0.9	0.8	hypothetical protein
BPHYT_RS12990		+0.9	1.5	iron transporter
BPHYT_RS05570		+0.9	3.0	hypothetical protein
BPHYT_RS29250		+0.9	2.2	dihydrodipicolinate synthase
BPHYT_RS05025		+0.9	1.3	sugar ABC transporter substrate-binding protein
BPHYT_RS34770		+0.9	1.6	chemotaxis protein
BPHYT_RS17725		+0.9	4.8	BolA family transcriptional regulator
BPHYT_RS11425		+0.9	2.2	chemotaxis protein
BPHYT_RS03405		+0.9	3.1	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
BPHYT_RS33695		+0.9	1.0	molybdenum ABC transporter ATPase
BPHYT_RS12590		+0.9	1.2	dual-specificity RNA methyltransferase RlmN
BPHYT_RS10070		+0.9	3.1	hypothetical protein
BPHYT_RS23650		+0.9	0.6	hypothetical protein
BPHYT_RS32735		+0.9	2.3	hypothetical protein
BPHYT_RS08125		+0.9	5.1	ATPase
BPHYT_RS10715		+0.9	2.9	acyl-CoA dehydrogenase
BPHYT_RS00960		+0.9	3.1	recombinase RecA
BPHYT_RS17945		+0.9	2.2	cytochrome C biogenesis protein
BPHYT_RS26030		+0.9	1.3	cysteine hydrolase
BPHYT_RS10250		+0.9	2.2	inosine-5-monophosphate dehydrogenase
BPHYT_RS10315		+0.9	2.1	MFS transporter
BPHYT_RS06610		+0.9	1.2	triosephosphate isomerase
BPHYT_RS09145		+0.9	5.7	poly-beta-hydroxybutyrate polymerase
BPHYT_RS03755		+0.9	1.6	pilus assembly protein PilE
BPHYT_RS00150		+0.9	2.6	DEAD/DEAH box helicase
BPHYT_RS16840		+0.9	1.6	transketolase
BPHYT_RS30820		+0.9	2.5	GntR family transcriptional regulator
BPHYT_RS11250		+0.9	1.7	saccharopine dehydrogenase
BPHYT_RS29855		+0.9	0.9	protein-tyrosine-phosphatase
BPHYT_RS02410		+0.9	1.7	alpha/beta hydrolase
BPHYT_RS14845		+0.9	0.5	cysteine synthase
BPHYT_RS12635		+0.9	1.6	translation factor Sua5
BPHYT_RS02685		+0.9	3.8	cytochrome C oxidase subunit I
BPHYT_RS11815		+0.9	1.4	alcohol dehydrogenase
BPHYT_RS21725		+0.9	1.1	taurine ABC transporter substrate-binding protein
BPHYT_RS29410		+0.9	3.3	HPr kinase
BPHYT_RS22030		+0.9	1.5	peptide ABC transporter ATP-binding protein

Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments