Experiment set39S307 for Burkholderia phytofirmans PsJN

Compare to:

24hr PHYTO3 MOI 10

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS09500 +3.7 16.0 glucose-6-phosphate isomerase compare
BPHYT_RS06175 +3.6 7.3 LPS biosynthesis compare
BPHYT_RS04370 +3.4 1.0 glycosyl transferase compare
BPHYT_RS12845 +3.4 23.3 ATPase compare
BPHYT_RS25935 +3.3 1.7 type III secretion protein compare
BPHYT_RS33920 +3.2 22.7 type II citrate synthase compare
BPHYT_RS33820 +3.0 25.2 histidine kinase compare
BPHYT_RS13200 +2.9 7.4 molybdopterin binding oxidoreductase compare
BPHYT_RS05155 +2.7 11.4 acetyltransferase GCN5 compare
BPHYT_RS09330 +2.6 23.1 phytoene synthase compare
BPHYT_RS12465 +2.6 4.8 inositol monophosphatase compare
BPHYT_RS02595 +2.6 2.9 sulfurtransferase compare
BPHYT_RS14400 +2.5 4.8 anti-sigma factor compare
BPHYT_RS06195 +2.5 2.9 membrane protein compare
BPHYT_RS09315 +2.5 0.9 chemotaxis protein CheY compare
BPHYT_RS06985 +2.5 13.9 fumarate hydratase compare
BPHYT_RS05575 +2.5 18.8 Fis family transcriptional regulator compare
BPHYT_RS25970 +2.5 1.7 urea amidolyase compare
BPHYT_RS06075 +2.4 19.4 hypothetical protein compare
BPHYT_RS23910 +2.4 6.5 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS12150 +2.3 13.7 PII uridylyl-transferase compare
BPHYT_RS05560 +2.2 12.6 Fis family transcriptional regulator compare
BPHYT_RS12725 +2.2 16.4 regulator compare
BPHYT_RS16710 +2.1 0.8 LysR family transcriptional regulator compare
BPHYT_RS25575 +2.1 2.3 alpha/beta hydrolase compare
BPHYT_RS15620 +2.0 4.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS30995 +2.0 0.8 glucose-1-phosphate thymidylyltransferase compare
BPHYT_RS36220 +2.0 2.3 hypothetical protein compare
BPHYT_RS14140 +2.0 4.6 phosphate transporter permease subunit PstC compare
BPHYT_RS04315 +1.9 8.6 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS28535 +1.9 1.9 response regulator receiver compare
BPHYT_RS04385 +1.9 2.4 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS09145 +1.9 10.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS05590 +1.9 13.7 trehalose-6-phosphate synthase compare
BPHYT_RS12900 +1.9 2.0 transposase compare
BPHYT_RS02905 +1.9 15.5 RNA polymerase subunit sigma-54 compare
BPHYT_RS17945 +1.8 4.4 cytochrome C biogenesis protein compare
BPHYT_RS35215 +1.8 2.5 dehydrogenase compare
BPHYT_RS05190 +1.8 4.6 ADP-heptose--LPS heptosyltransferase compare
BPHYT_RS04300 +1.8 9.3 family 2 glycosyl transferase compare
BPHYT_RS08945 +1.7 5.3 hypothetical protein compare
BPHYT_RS30860 +1.7 2.6 sugar ABC transporter permease compare
BPHYT_RS26770 +1.7 2.3 histidine kinase compare
BPHYT_RS14395 +1.7 5.7 sugar dehydratase compare
BPHYT_RS03455 +1.7 2.5 paraquat-inducible protein A compare
BPHYT_RS02525 +1.7 7.4 membrane protein compare
BPHYT_RS36470 +1.7 0.9 hypothetical protein compare
BPHYT_RS20115 +1.7 1.8 transcriptional regulator compare
BPHYT_RS11555 +1.7 3.7 allantoinase compare
BPHYT_RS16335 +1.7 3.9 membrane protein compare
BPHYT_RS04320 +1.6 6.7 hypothetical protein compare
BPHYT_RS17750 +1.6 11.1 VacJ family lipoprotein compare
BPHYT_RS22815 +1.6 2.4 TonB-denpendent receptor compare
BPHYT_RS16345 +1.6 3.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS04950 +1.6 11.4 hypothetical protein compare
BPHYT_RS09660 +1.6 8.8 trehalose-6-phosphate synthase compare
BPHYT_RS28360 +1.6 1.5 carboxymuconolactone decarboxylase compare
BPHYT_RS04945 +1.6 12.5 membrane protein compare
BPHYT_RS04940 +1.6 4.0 hypothetical protein compare
BPHYT_RS01960 +1.6 4.9 cytochrome C compare
BPHYT_RS04285 +1.5 0.7 rhamnosyltransferase compare
BPHYT_RS26510 +1.5 1.9 transcriptional regulator compare
BPHYT_RS35165 +1.5 2.7 peptidase compare
BPHYT_RS33400 +1.5 3.1 magnesium transporter CorA compare
BPHYT_RS30645 +1.5 2.6 hypothetical protein compare
BPHYT_RS31060 +1.5 1.7 capsular polysaccharide biosynthesis protein compare
BPHYT_RS10040 +1.5 1.4 hypothetical protein compare
BPHYT_RS11170 +1.4 0.9 hypothetical protein compare
BPHYT_RS09690 +1.4 1.7 phosphate starvation-inducible protein PsiF compare
BPHYT_RS30450 +1.4 0.9 ABC transporter permease compare
BPHYT_RS06070 +1.4 9.8 cytochrome C compare
BPHYT_RS14855 +1.4 0.5 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS16340 +1.4 4.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS09160 +1.4 3.8 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS02650 +1.4 3.1 membrane protein compare
BPHYT_RS10995 +1.4 1.8 GntR family transcriptional regulator compare
BPHYT_RS05335 +1.4 2.9 AraC family transcriptional regulator compare
BPHYT_RS08125 +1.4 8.3 ATPase compare
BPHYT_RS16840 +1.4 2.7 transketolase compare
BPHYT_RS25005 +1.4 2.3 FMN reductase compare
BPHYT_RS16435 +1.4 9.8 alcohol dehydrogenase compare
BPHYT_RS00900 +1.4 2.6 beta-lactamase compare
BPHYT_RS02665 +1.4 8.1 MFS transporter compare
BPHYT_RS00295 +1.4 3.5 hypothetical protein compare
BPHYT_RS21860 +1.3 1.4 hypothetical protein compare
BPHYT_RS08415 +1.3 1.5 hypothetical protein compare
BPHYT_RS14135 +1.3 4.0 phosphate transporter permease subunit PtsA compare
BPHYT_RS27905 +1.3 2.2 MFS transporter compare
BPHYT_RS02435 +1.3 1.9 hypothetical protein compare
BPHYT_RS10315 +1.3 2.4 MFS transporter compare
BPHYT_RS16430 +1.3 10.8 cytochrome C compare
BPHYT_RS20280 +1.3 2.8 hypothetical protein compare
BPHYT_RS04430 +1.3 1.1 amino acid ABC transporter ATPase compare
BPHYT_RS10320 +1.3 5.4 hypothetical protein compare
BPHYT_RS02860 +1.3 0.5 membrane protein compare
BPHYT_RS19130 +1.3 2.1 acetyltransferase compare
BPHYT_RS27430 +1.3 1.3 LysR family transcriptional regulator compare
BPHYT_RS28595 +1.3 1.1 glyoxalase compare
BPHYT_RS04290 +1.3 0.7 glycosyl transferase family 2 compare
BPHYT_RS20425 +1.3 1.6 hypothetical protein compare
BPHYT_RS06065 +1.3 8.0 cytochrome C compare
BPHYT_RS18600 +1.3 1.8 glutathione S-transferase compare
BPHYT_RS14145 +1.3 6.6 phosphate ABC transporter substrate-binding protein compare
BPHYT_RS07300 +1.2 1.6 porin compare
BPHYT_RS26015 +1.2 1.8 rod shape-determining protein MreB compare
BPHYT_RS23455 +1.2 1.0 phosphorylase compare
BPHYT_RS34185 +1.2 2.8 cold-shock protein compare
BPHYT_RS19985 +1.2 1.0 CoA-transferase compare
BPHYT_RS01455 +1.2 1.0 peptide deformylase compare
BPHYT_RS08615 +1.2 1.9 hypothetical protein compare
BPHYT_RS02640 +1.2 7.5 cytochrome C oxidase compare
BPHYT_RS16245 +1.2 3.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS02880 +1.2 1.1 ATP-dependent protease compare
BPHYT_RS18255 +1.2 1.5 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS28985 +1.2 3.5 hypothetical protein compare
BPHYT_RS35955 +1.2 1.3 hypothetical protein compare
BPHYT_RS11795 +1.2 0.8 membrane protein compare
BPHYT_RS12830 +1.2 3.5 dihydrolipoamide dehydrogenase compare
BPHYT_RS09040 +1.2 2.8 MerR family transcriptional regulator compare
BPHYT_RS24045 +1.2 1.2 amino acid ABC transporter compare
BPHYT_RS07325 +1.1 0.4 GntR family transcriptional regulator compare
BPHYT_RS02540 +1.1 2.1 hypothetical protein compare
BPHYT_RS17755 +1.1 4.9 ABC transporter substrate-binding protein compare
BPHYT_RS33695 +1.1 1.2 molybdenum ABC transporter ATPase compare
BPHYT_RS34745 +1.1 0.9 hypothetical protein compare
BPHYT_RS26490 +1.1 0.7 hypothetical protein compare
BPHYT_RS12840 +1.1 2.3 pyruvate dehydrogenase compare
BPHYT_RS07690 +1.1 1.2 AraC family transcriptional regulator compare
BPHYT_RS17920 +1.1 1.3 protein CyaY compare
BPHYT_RS29920 +1.1 0.7 hypothetical protein compare
BPHYT_RS08595 +1.1 1.1 multidrug transporter compare
BPHYT_RS07960 +1.1 1.1 hypothetical protein compare
BPHYT_RS26300 +1.1 1.1 ATP-dependent DNA ligase compare
BPHYT_RS28470 +1.1 0.9 hypothetical protein compare
BPHYT_RS30365 +1.1 1.2 beta-lactamase compare
BPHYT_RS01965 +1.1 1.2 tRNA-Ala compare
BPHYT_RS23940 +1.1 0.7 GntR family transcriptional regulator compare
BPHYT_RS32960 +1.1 2.1 short-chain dehydrogenase compare
BPHYT_RS20380 +1.1 1.9 LysR family transcriptional regulator compare
BPHYT_RS11480 +1.1 2.4 heme ABC transporter ATP-binding protein compare
BPHYT_RS15105 +1.1 3.3 FAD-dependent oxidoreductase compare
BPHYT_RS10015 +1.1 2.0 NAD(P)H dehydrogenase (quinone) compare
BPHYT_RS26975 +1.1 1.3 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS06990 +1.1 0.7 membrane protein compare
BPHYT_RS21910 +1.1 1.4 ABC transporter permease compare
BPHYT_RS27495 +1.1 0.6 hypothetical protein compare
BPHYT_RS22400 +1.1 1.5 hypothetical protein compare
BPHYT_RS06685 +1.1 2.6 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS13645 +1.1 8.1 threonine--tRNA ligase compare
BPHYT_RS22295 +1.1 1.4 LysR family transcriptional regulator compare
BPHYT_RS06350 +1.1 1.0 chemotaxis protein CheY compare
BPHYT_RS09545 +1.0 1.4 peptide methionine sulfoxide reductase compare
BPHYT_RS34280 +1.0 1.5 hypothetical protein compare
BPHYT_RS29520 +1.0 0.7 hypothetical protein compare
BPHYT_RS29085 +1.0 1.0 LysR family transcriptional regulator compare
BPHYT_RS07080 +1.0 1.7 glutathione S-transferase compare
BPHYT_RS26130 +1.0 1.3 ABC transporter permease compare
BPHYT_RS04875 +1.0 1.6 alpha-ribazole phosphatase compare
BPHYT_RS16210 +1.0 1.5 peptidase compare
BPHYT_RS07635 +1.0 1.9 alkanesulfonate monooxygenase compare
BPHYT_RS24745 +1.0 1.4 transcriptional regulator compare
BPHYT_RS32240 +1.0 0.8 chromosome replication initiation inhibitor protein compare
BPHYT_RS24095 +1.0 1.7 membrane protein compare
BPHYT_RS10260 +1.0 1.3 hypothetical protein compare
BPHYT_RS05355 +1.0 2.9 Crp/Fnr family transcriptional regulator compare
BPHYT_RS00370 +1.0 2.0 ABC transporter ATP-binding protein compare
BPHYT_RS11635 +1.0 0.5 RNA polymerase subunit sigma-24 compare
BPHYT_RS26415 +1.0 1.9 glutathione S-transferase compare
BPHYT_RS15290 +1.0 2.0 tRNA-Arg compare
BPHYT_RS14485 +1.0 2.4 ribonuclease E compare
BPHYT_RS13835 +1.0 1.2 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS33070 +1.0 1.7 haloacid dehalogenase compare
BPHYT_RS06435 +1.0 1.2 hypothetical protein compare
BPHYT_RS15615 +1.0 1.6 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS09810 +1.0 1.9 hypothetical protein compare
BPHYT_RS09390 +1.0 0.9 ABC transporter permease compare
BPHYT_RS17745 +1.0 4.2 toluene tolerance family protein compare
BPHYT_RS26465 +1.0 0.7 metallophosphoesterase compare
BPHYT_RS25340 +1.0 1.2 sulfatase compare
BPHYT_RS15710 +1.0 0.4 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06780 +1.0 2.9 hypothetical protein compare
BPHYT_RS02635 +1.0 5.9 membrane protein compare
BPHYT_RS30070 +1.0 2.8 multidrug ABC transporter ATPase compare
BPHYT_RS25590 +1.0 1.1 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS11405 +1.0 2.5 hypothetical protein compare
BPHYT_RS36320 +1.0 2.9 type IV secretion system family protein compare
BPHYT_RS09640 +1.0 4.4 DNAase compare
BPHYT_RS19565 +0.9 3.8 gamma-glutamyl:cysteine ligase compare
BPHYT_RS36590 +0.9 1.1 hypothetical protein compare
BPHYT_RS09525 +0.9 1.8 toxin HipA compare
BPHYT_RS02685 +0.9 4.2 cytochrome C oxidase subunit I compare
BPHYT_RS11510 +0.9 3.0 ABC transporter compare
BPHYT_RS11895 +0.9 1.9 peroxiredoxin compare
BPHYT_RS31225 +0.9 4.1 D-alanyl-D-alanine dipeptidase compare
BPHYT_RS23525 +0.9 0.7 hypothetical protein compare
BPHYT_RS17765 +0.9 4.1 toluene ABC transporter ATP-binding protein compare
BPHYT_RS24525 +0.9 3.0 2-hydroxyacid dehydrogenase compare
BPHYT_RS28040 +0.9 1.7 acyl-CoA dehydrogenase compare
BPHYT_RS07835 +0.9 1.2 muconolactone delta-isomerase compare
BPHYT_RS26025 +0.9 0.4 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment