Experiment set39S304 for Burkholderia phytofirmans PsJN

200 most detrimental genes:

gene	name	fitness	t score	description
BPHYT_RS19570		+3.2	28.6	sodium/hydrogen exchanger
BPHYT_RS19565		+3.1	20.1	gamma-glutamyl:cysteine ligase
BPHYT_RS11705		+2.9	2.4	hypothetical protein
BPHYT_RS33820		+2.7	25.6	histidine kinase
BPHYT_RS16710		+2.6	1.3	LysR family transcriptional regulator
BPHYT_RS02905		+2.3	20.2	RNA polymerase subunit sigma-54
BPHYT_RS02595		+2.2	3.0	sulfurtransferase
BPHYT_RS25935		+2.2	1.9	type III secretion protein
BPHYT_RS04945		+2.1	19.4	membrane protein
BPHYT_RS09330		+2.1	18.6	phytoene synthase
BPHYT_RS05575		+2.0	16.6	Fis family transcriptional regulator
BPHYT_RS04950		+2.0	16.8	hypothetical protein
BPHYT_RS05560		+2.0	11.5	Fis family transcriptional regulator
BPHYT_RS14140		+1.9	4.3	phosphate transporter permease subunit PstC
BPHYT_RS06075		+1.9	14.0	hypothetical protein
BPHYT_RS20155		+1.9	1.8	hypothetical protein
BPHYT_RS33920		+1.9	13.0	type II citrate synthase
BPHYT_RS12845		+1.9	15.3	ATPase
BPHYT_RS13645		+1.8	16.7	threonine--tRNA ligase
BPHYT_RS05590		+1.8	15.0	trehalose-6-phosphate synthase
BPHYT_RS12725		+1.8	15.9	regulator
BPHYT_RS04940		+1.8	3.0	hypothetical protein
BPHYT_RS14400		+1.8	4.4	anti-sigma factor
BPHYT_RS04290		+1.7	1.1	glycosyl transferase family 2
BPHYT_RS05155		+1.7	11.4	acetyltransferase GCN5
BPHYT_RS25340		+1.6	3.4	sulfatase
BPHYT_RS14395		+1.6	8.4	sugar dehydratase
BPHYT_RS04370		+1.6	0.5	glycosyl transferase
BPHYT_RS17905		+1.6	2.3	fimbrial assembly family protein
BPHYT_RS02435		+1.6	1.5	hypothetical protein
BPHYT_RS24095		+1.6	4.8	membrane protein
BPHYT_RS06530		+1.5	1.9	membrane protein
BPHYT_RS07960		+1.5	2.1	hypothetical protein
BPHYT_RS09500		+1.5	7.2	glucose-6-phosphate isomerase
BPHYT_RS09815		+1.5	3.2	malate synthase
BPHYT_RS10400		+1.5	1.6	taurine ABC transporter permease
BPHYT_RS26570		+1.5	1.7	5'-nucleotidase
BPHYT_RS16675		+1.5	1.8	dihydroorotase
BPHYT_RS23910		+1.5	3.9	phosphoribosyl-dephospho-CoA transferase
BPHYT_RS16335		+1.5	4.2	membrane protein
BPHYT_RS33400		+1.5	2.7	magnesium transporter CorA
BPHYT_RS05610		+1.5	9.6	DNA-cytosine methyltransferase
BPHYT_RS08945		+1.5	8.8	hypothetical protein
BPHYT_RS12150		+1.5	11.4	PII uridylyl-transferase
BPHYT_RS06985		+1.4	6.6	fumarate hydratase
BPHYT_RS18655		+1.4	7.2	3-oxoacyl-ACP synthase
BPHYT_RS09660		+1.4	8.2	trehalose-6-phosphate synthase
BPHYT_RS31615		+1.4	2.0	thiamine pyrophosphate protein
BPHYT_RS00690		+1.4	1.2	transcriptional regulator
BPHYT_RS02640		+1.4	10.5	cytochrome C oxidase
BPHYT_RS18600		+1.4	2.6	glutathione S-transferase
BPHYT_RS12465		+1.4	3.0	inositol monophosphatase
BPHYT_RS28930		+1.4	1.8	chromosome partitioning protein ParA
BPHYT_RS02865		+1.3	1.1	hypothetical protein
BPHYT_RS06175		+1.3	3.2	LPS biosynthesis
BPHYT_RS06990		+1.3	1.1	membrane protein
BPHYT_RS02525		+1.3	6.9	membrane protein
BPHYT_RS29175		+1.3	3.2	ABC transporter ATP-binding protein
BPHYT_RS27330		+1.3	1.9	hypothetical protein
BPHYT_RS16345		+1.3	3.4	succinyl-CoA ligase [ADP-forming] subunit beta
BPHYT_RS20665		+1.3	0.9	LysR family transcriptional regulator
BPHYT_RS20790		+1.3	1.2	TetR family transcriptional regulator
BPHYT_RS17240		+1.3	0.7	cell division protein FtsW
BPHYT_RS16390		+1.3	4.4	MarR family transcriptional regulator
BPHYT_RS01630		+1.3	1.2	ATP-dependent protease ATPase subunit HslU
BPHYT_RS03620		+1.3	7.1	poly(A) polymerase
BPHYT_RS35310		+1.3	1.6	GCN5 family N-acetyltransferase
BPHYT_RS18635		+1.3	3.3	LamB/YcsF family protein
BPHYT_RS08850		+1.3	0.6	transcriptional regulator
BPHYT_RS08565		+1.3	0.7	dihydroorotate dehydrogenase
BPHYT_RS02650		+1.2	3.3	membrane protein
BPHYT_RS14855		+1.2	0.5	ADP-L-glycero-D-manno-heptose-6-epimerase
BPHYT_RS07840		+1.2	1.6	muconate cycloisomerase
BPHYT_RS12990		+1.2	3.0	iron transporter
BPHYT_RS14145		+1.2	6.5	phosphate ABC transporter substrate-binding protein
BPHYT_RS14135		+1.2	4.9	phosphate transporter permease subunit PtsA
BPHYT_RS30085		+1.2	1.7	hypothetical protein
BPHYT_RS12290		+1.2	2.4	universal stress protein UspA
BPHYT_RS17445		+1.2	3.2	GTP-binding protein YchF
BPHYT_RS07860		+1.2	2.3	benzoate 1,2-dioxygenase subunit beta
BPHYT_RS31550		+1.2	2.0	hypothetical protein
BPHYT_RS07570		+1.1	1.2	hypothetical protein
BPHYT_RS10145		+1.1	2.8	Mn-containing catalase
BPHYT_RS23540		+1.1	3.0	RND transporter
BPHYT_RS10995		+1.1	2.1	GntR family transcriptional regulator
BPHYT_RS34185		+1.1	3.1	cold-shock protein
BPHYT_RS13610		+1.1	1.7	MerR family transcriptional regulator
BPHYT_RS27655		+1.1	1.3	potassium transporter
BPHYT_RS06065		+1.1	6.3	cytochrome C
BPHYT_RS33150		+1.1	1.2	beta-lactamase
BPHYT_RS34745		+1.1	1.1	hypothetical protein
BPHYT_RS14845		+1.1	0.9	cysteine synthase
BPHYT_RS17885		+1.1	3.0	3-dehydroquinate synthase
BPHYT_RS26955		+1.1	1.5	succinylglutamate desuccinylase
BPHYT_RS32960		+1.1	2.0	short-chain dehydrogenase
BPHYT_RS06105		+1.1	1.2	hypothetical protein
BPHYT_RS24135		+1.1	2.6	alpha-dehydro-beta-deoxy-D-glucarate aldolase
BPHYT_RS00295		+1.1	1.8	hypothetical protein
BPHYT_RS12840		+1.1	2.5	pyruvate dehydrogenase
BPHYT_RS01170		+1.1	1.2	hypothetical protein
BPHYT_RS30865		+1.1	1.6	sugar ABC transporter ATP-binding protein
BPHYT_RS02635		+1.1	5.8	membrane protein
BPHYT_RS03625		+1.0	4.8	Histidinol-phosphatase (EC:3.1.3.15) (from data)
BPHYT_RS31395		+1.0	3.8	thiamine pyrophosphate-binding protein
BPHYT_RS29520		+1.0	0.8	hypothetical protein
BPHYT_RS33390		+1.0	2.0	phosphate ABC transporter substrate-binding protein
BPHYT_RS07255		+1.0	1.8	4-oxalocrotonate decarboxylase
BPHYT_RS33695		+1.0	1.7	molybdenum ABC transporter ATPase
BPHYT_RS06400		+1.0	3.3	oxygen-dependent coproporphyrinogen-III oxidase
BPHYT_RS10320		+1.0	2.0	hypothetical protein
BPHYT_RS29720		+1.0	1.1	molybdopterin-guanine dinucleotide biosynthesis protein MobA
BPHYT_RS05320		+1.0	1.4	beta-lactamase
BPHYT_RS23155		+1.0	1.3	Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data)
BPHYT_RS04285		+1.0	0.5	rhamnosyltransferase
BPHYT_RS05670		+1.0	2.1	hypothetical protein
BPHYT_RS29710		+1.0	2.4	FAD-binding molybdopterin dehydrogenase
BPHYT_RS05585		+1.0	3.9	hypothetical protein
BPHYT_RS02530		+1.0	6.1	hypothetical protein
BPHYT_RS34125		+1.0	3.7	heavy metal translocating P-type ATPase
BPHYT_RS14340		+1.0	6.4	Fis family transcriptional regulator
BPHYT_RS13470		+1.0	0.7	arylsulfate sulfotransferase
BPHYT_RS11250		+1.0	1.4	saccharopine dehydrogenase
BPHYT_RS05290		+1.0	0.8	hypothetical protein
BPHYT_RS26775		+1.0	1.3	chemotaxis protein CheB
BPHYT_RS28075		+1.0	1.2	cytochrome B561
BPHYT_RS26780		+1.0	5.9	chemotaxis protein CheR
BPHYT_RS22045		+1.0	1.8	peptide ABC transporter permease
BPHYT_RS17265		+1.0	1.2	cell division protein
BPHYT_RS28920		+1.0	1.1	cellulose synthase
BPHYT_RS16060		+1.0	2.1	ribonucleotide-diphosphate reductase subunit alpha
BPHYT_RS05615		+1.0	0.8	hypothetical protein
BPHYT_RS03400		+1.0	0.5	ATP-dependent DNA helicase RecG
BPHYT_RS30425		+1.0	1.6	LysR family transcriptional regulator
BPHYT_RS27060		+1.0	1.3	photosystem reaction center subunit H
BPHYT_RS34035		+0.9	1.6	type II and III secretion system outermembrane protein, secretin
BPHYT_RS06605		+0.9	3.4	NAD(P)H quinone oxidoreductase
BPHYT_RS28505		+0.9	1.1	5-deoxyglucuronate isomerase
BPHYT_RS30720		+0.9	0.9	hypothetical protein
BPHYT_RS17945		+0.9	2.4	cytochrome C biogenesis protein
BPHYT_RS16430		+0.9	8.1	cytochrome C
BPHYT_RS25065		+0.9	1.4	glycine/betaine ABC transporter ATPase
BPHYT_RS17545		+0.9	3.9	cold-shock protein
BPHYT_RS02540		+0.9	2.1	hypothetical protein
BPHYT_RS02685		+0.9	5.8	cytochrome C oxidase subunit I
BPHYT_RS10175		+0.9	1.8	membrane protein
BPHYT_RS10230		+0.9	1.3	hypothetical protein
BPHYT_RS29250		+0.9	2.2	dihydrodipicolinate synthase
BPHYT_RS28595		+0.9	0.9	glyoxalase
BPHYT_RS32415		+0.9	3.0	translation elongation factor
BPHYT_RS03170		+0.9	0.9	membrane protein
BPHYT_RS32435		+0.9	2.4	formate dehydrogenase-N subunit beta
BPHYT_RS20220		+0.9	0.8	antibiotic synthesis protein MbtH
BPHYT_RS09640		+0.9	3.9	DNAase
BPHYT_RS08665		+0.9	0.7	hypothetical protein
BPHYT_RS34485		+0.9	2.2	diguanylate phosphodiesterase
BPHYT_RS02880		+0.9	1.0	ATP-dependent protease
BPHYT_RS24640		+0.9	2.3	alcohol dehydrogenase
BPHYT_RS04720		+0.9	5.4	transcriptional regulator
BPHYT_RS22485		+0.9	1.9	NADP-dependent aryl-alcohol dehydrogenase
BPHYT_RS07705		+0.9	2.0	arginine succinyltransferase
BPHYT_RS11965		+0.9	2.8	alkylhydroperoxidase
BPHYT_RS25320		+0.9	3.1	cobalamin biosynthesis protein CobW
BPHYT_RS06070		+0.9	5.3	cytochrome C
BPHYT_RS26675		+0.9	1.5	precorrin-6Y C5,15-methyltransferase
BPHYT_RS07325		+0.9	0.4	GntR family transcriptional regulator
BPHYT_RS16435		+0.9	6.8	alcohol dehydrogenase
BPHYT_RS26015		+0.9	1.2	rod shape-determining protein MreB
BPHYT_RS14485		+0.9	2.9	ribonuclease E
BPHYT_RS04385		+0.9	1.7	nucleoside-diphosphate sugar oxidoreductase
BPHYT_RS21700		+0.9	1.4	phosphotransacetylase
BPHYT_RS06725		+0.9	2.7	MaoC family dehydratase
BPHYT_RS24270		+0.9	0.8	C4-dicarboxylate ABC transporter substrate-binding protein
BPHYT_RS35100		+0.9	1.9	ABC transporter substrate-binding protein
BPHYT_RS24550		+0.9	1.7	hypothetical protein
BPHYT_RS30210		+0.9	2.4	GCN5 family acetyltransferase
BPHYT_RS01620		+0.9	5.3	sensor histidine kinase
BPHYT_RS09445		+0.9	2.0	trigger factor
BPHYT_RS02665		+0.9	5.5	MFS transporter
BPHYT_RS08510		+0.9	1.6	acyl-CoA dehydrogenase
BPHYT_RS23975		+0.9	1.1	peroxidase
BPHYT_RS28285		+0.9	1.6	MFS transporter
BPHYT_RS29410		+0.9	3.5	HPr kinase
BPHYT_RS25575		+0.9	0.9	alpha/beta hydrolase
BPHYT_RS17035		+0.9	0.7	sugar kinase
BPHYT_RS01505		+0.9	2.5	7-cyano-7-deazaguanine reductase
BPHYT_RS28200		+0.9	0.9	sugar ABC transporter substrate-binding protein
BPHYT_RS09395		+0.9	3.3	ABC transporter permease
BPHYT_RS09145		+0.9	5.6	poly-beta-hydroxybutyrate polymerase
BPHYT_RS16175		+0.9	0.5	hemolysin D
BPHYT_RS23445		+0.9	0.9	hexuronate transporter
BPHYT_RS23875		+0.8	0.9	sugar ABC transporter ATP-binding protein
BPHYT_RS34445		+0.8	2.3	GntR family transcriptional regulator
BPHYT_RS06375		+0.8	1.9	ribonuclease
BPHYT_RS17030		+0.8	1.0	lipid hydroperoxide peroxidase
BPHYT_RS13715		+0.8	3.4	hypothetical protein
BPHYT_RS33740		+0.8	1.8	hypothetical protein
BPHYT_RS15620		+0.8	2.1	peptidyl-prolyl cis-trans isomerase
BPHYT_RS23125		+0.8	3.0	FAD-dependent oxidoreductase
BPHYT_RS24045		+0.8	2.5	amino acid ABC transporter
BPHYT_RS15335		+0.8	5.5	coproporphyrinogen III oxidase

Specific Phenotypes

None in this experiment

For Burkholderia phytofirmans PsJN in phage experiments