Experiment set38S727 for Burkholderia phytofirmans PsJN

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Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -6.7 -4.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS16270 -6.6 -4.4 phosphoglycerate kinase compare
BPHYT_RS17690 -6.3 -11.3 imidazole glycerol phosphate synthase compare
BPHYT_RS17685 -5.6 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS04955 -5.5 -1.9 methionyl-tRNA synthetase compare
BPHYT_RS02610 -5.2 -4.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17380 -5.1 -11.4 ribulose-phosphate 3-epimerase compare
BPHYT_RS17670 -5.1 -5.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS03150 -5.1 -15.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS16835 -5.0 -5.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS23840 -4.8 -4.1 methyltransferase compare
BPHYT_RS06555 -4.8 -8.7 ketol-acid reductoisomerase compare
BPHYT_RS17400 -4.8 -9.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS02590 -4.4 -7.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17675 -4.3 -2.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS08955 -4.3 -4.2 homoserine dehydrogenase compare
BPHYT_RS18320 -4.1 -2.9 orotate phosphoribosyltransferase compare
BPHYT_RS17855 -4.1 -17.2 glutamate synthase compare
BPHYT_RS15920 -4.1 -13.1 argininosuccinate synthase compare
BPHYT_RS33900 -3.9 -13.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS33865 -3.9 -9.8 tryptophan synthase alpha chain compare
BPHYT_RS06545 -3.9 -11.1 acetolactate synthase compare
BPHYT_RS01595 -3.8 -11.7 homoserine O-acetyltransferase compare
BPHYT_RS33835 -3.8 -8.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33645 -3.8 -3.7 homoserine kinase compare
BPHYT_RS14915 -3.8 -8.3 phosphoserine aminotransferase compare
BPHYT_RS15915 -3.7 -8.7 ornithine carbamoyltransferase compare
BPHYT_RS33875 -3.7 -9.0 tryptophan synthase subunit alpha compare
BPHYT_RS12845 -3.7 -10.7 ATPase compare
BPHYT_RS14865 -3.6 -2.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS05010 -3.5 -4.8 RpiR family transcriptional regulator compare
BPHYT_RS17700 -3.5 -4.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06530 -3.5 -1.6 membrane protein compare
BPHYT_RS26025 -3.5 -1.2 hypothetical protein compare
BPHYT_RS06975 -3.5 -2.3 glutamate racemase compare
BPHYT_RS33880 -3.5 -10.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17395 -3.5 -2.3 anthranilate synthase subunit II compare
BPHYT_RS12530 -3.5 -6.2 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS13705 -3.4 -3.1 chorismate synthase compare
BPHYT_RS17715 -3.3 -8.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS04965 -3.3 -8.3 ATP-binding protein compare
BPHYT_RS15620 -3.3 -2.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS01585 -3.2 -5.9 major facilitator superfamily protein compare
BPHYT_RS33580 -3.2 -3.7 geranyltranstransferase compare
BPHYT_RS14895 -3.2 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33840 -3.1 -5.5 amidophosphoribosyltransferase compare
BPHYT_RS06900 -3.1 -5.5 aspartate aminotransferase compare
BPHYT_RS17405 -3.1 -1.4 indole-3-glycerol phosphate synthase compare
BPHYT_RS06685 -3.0 -1.9 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS17885 -2.9 -4.4 3-dehydroquinate synthase compare
BPHYT_RS18665 -2.9 -9.6 GumN family protein compare
BPHYT_RS17390 -2.9 -12.4 anthranilate synthase subunit I compare
BPHYT_RS06405 -2.9 -5.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS16180 -2.8 -0.9 TetR family transcriptional regulator compare
BPHYT_RS08960 -2.8 -1.5 threonine synthase compare
BPHYT_RS33915 -2.8 -6.9 isopropylmalate isomerase compare
BPHYT_RS02690 -2.8 -12.1 protoheme IX farnesyltransferase compare
BPHYT_RS33920 -2.8 -5.2 type II citrate synthase compare
BPHYT_RS14755 -2.7 -3.7 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS02570 -2.7 -7.5 phosphocarrier protein HPr compare
BPHYT_RS06175 -2.7 -5.0 LPS biosynthesis compare
BPHYT_RS02860 -2.7 -0.9 membrane protein compare
BPHYT_RS06610 -2.6 -1.2 triosephosphate isomerase compare
BPHYT_RS17945 -2.6 -2.3 cytochrome C biogenesis protein compare
BPHYT_RS17520 -2.6 -3.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS14910 -2.6 -9.1 chorismate mutase compare
BPHYT_RS17095 -2.6 -2.9 proline--tRNA ligase compare
BPHYT_RS06190 -2.4 -2.5 heptosyltransferase compare
BPHYT_RS10100 -2.4 -4.9 dihydroxy-acid dehydratase compare
BPHYT_RS03645 -2.4 -2.1 tRNA dimethylallyltransferase compare
BPHYT_RS16245 -2.4 -2.3 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS16735 -2.3 -5.9 phosphogluconate dehydratase compare
BPHYT_RS14845 -2.3 -2.5 cysteine synthase compare
BPHYT_RS17760 -2.2 -5.0 ABC transporter permease compare
BPHYT_RS31910 -2.2 -1.3 hypothetical protein compare
BPHYT_RS09145 -2.2 -10.3 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS30750 -2.2 -2.3 GntR family transcriptional regulator compare
BPHYT_RS09500 -2.2 -7.5 glucose-6-phosphate isomerase compare
BPHYT_RS14190 -2.1 -2.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS09465 -2.1 -1.8 transcriptional regulator compare
BPHYT_RS12055 -2.1 -12.0 phosphoenolpyruvate synthase compare
BPHYT_RS08245 -2.1 -4.5 anti-sigma factor compare
BPHYT_RS22360 -2.0 -2.5 response regulator receiver compare
BPHYT_RS03410 -2.0 -2.0 queuine tRNA-ribosyltransferase compare
BPHYT_RS03685 -2.0 -2.4 Tol system periplasmic component YbgF compare
BPHYT_RS16065 -2.0 -1.1 LacI family transcriptional regulator compare
BPHYT_RS12465 -2.0 -1.2 inositol monophosphatase compare
BPHYT_RS02525 -2.0 -5.1 membrane protein compare
BPHYT_RS06550 -2.0 -2.0 acetolactate synthase compare
BPHYT_RS16905 -2.0 -3.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS17765 -2.0 -5.0 toluene ABC transporter ATP-binding protein compare
BPHYT_RS02640 -1.9 -11.5 cytochrome C oxidase compare
BPHYT_RS12985 -1.9 -1.2 amino acid acetyltransferase compare
BPHYT_RS16840 -1.9 -1.3 transketolase compare
BPHYT_RS35885 -1.9 -3.0 hypothetical protein compare
BPHYT_RS12615 -1.9 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS32260 -1.9 -1.2 hypothetical protein compare
BPHYT_RS34780 -1.9 -4.6 phytoene synthase compare
BPHYT_RS15710 -1.8 -1.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06075 -1.8 -6.6 hypothetical protein compare
BPHYT_RS17890 -1.8 -1.0 shikimate kinase compare
BPHYT_RS26510 -1.8 -2.4 transcriptional regulator compare
BPHYT_RS25820 -1.8 -1.9 sugar ABC transporter compare
BPHYT_RS04285 -1.8 -1.3 rhamnosyltransferase compare
BPHYT_RS17745 -1.8 -6.1 toluene tolerance family protein compare
BPHYT_RS02650 -1.8 -1.6 membrane protein compare
BPHYT_RS06410 -1.7 -2.5 transcriptional regulator compare
BPHYT_RS04720 -1.7 -7.1 transcriptional regulator compare
BPHYT_RS12725 -1.7 -9.4 regulator compare
BPHYT_RS04455 -1.7 -1.3 glycosyl transferase compare
BPHYT_RS18655 -1.6 -2.5 3-oxoacyl-ACP synthase compare
BPHYT_RS02665 -1.6 -9.7 MFS transporter compare
BPHYT_RS03170 -1.6 -2.7 membrane protein compare
BPHYT_RS05225 -1.6 -7.2 phosphoenolpyruvate carboxylase compare
BPHYT_RS06375 -1.5 -3.2 ribonuclease compare
BPHYT_RS13645 -1.5 -11.0 threonine--tRNA ligase compare
BPHYT_RS10095 -1.5 -1.2 integrase compare
BPHYT_RS07515 -1.5 -2.0 photosystem reaction center subunit H compare
BPHYT_RS19115 -1.5 -3.1 acyl carrier protein compare
BPHYT_RS14855 -1.5 -1.1 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS03570 -1.5 -5.1 heat-inducible transcription repressor HrcA compare
BPHYT_RS16555 -1.5 -2.0 cation transporter compare
BPHYT_RS02300 -1.5 -1.5 acid shock protein compare
BPHYT_RS06400 -1.5 -3.7 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS19570 -1.5 -9.8 sodium/hydrogen exchanger compare
BPHYT_RS03725 -1.5 -0.8 serine hydroxymethyltransferase compare
BPHYT_RS18710 -1.5 -1.8 membrane protein compare
BPHYT_RS04890 -1.5 -1.1 cobalamin biosynthesis protein CobD compare
BPHYT_RS18670 -1.4 -4.3 peptide ABC transporter ATP-binding protein compare
BPHYT_RS03280 -1.4 -1.2 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS04885 -1.4 -2.3 threonine-phosphate decarboxylase compare
BPHYT_RS30800 -1.4 -1.5 MFS transporter compare
BPHYT_RS32150 -1.4 -1.8 hypothetical protein compare
BPHYT_RS18760 -1.4 -1.6 flagellar biosynthesis protein FliT compare
BPHYT_RS20750 -1.4 -1.6 LacI family transcriptional regulator compare
BPHYT_RS25470 -1.4 -1.2 alkylhydroperoxidase compare
BPHYT_RS27230 -1.4 -1.5 hypothetical protein compare
BPHYT_RS09160 -1.4 -3.9 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS25500 -1.4 -1.3 hypothetical protein compare
BPHYT_RS34745 -1.3 -1.2 hypothetical protein compare
BPHYT_RS33850 -1.3 -1.1 sporulation protein compare
BPHYT_RS11960 -1.3 -1.1 MarR family transcriptional regulator compare
BPHYT_RS30745 -1.3 -1.8 hypothetical protein compare
BPHYT_RS17035 -1.3 -1.5 sugar kinase compare
BPHYT_RS26685 -1.3 -1.0 precorrin-8X methylmutase compare
BPHYT_RS12510 -1.3 -1.6 RNA-binding protein compare
BPHYT_RS17075 -1.3 -2.5 ABC transporter permease compare
BPHYT_RS16340 -1.3 -3.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS13605 -1.3 -1.0 tRNA-Pro compare
BPHYT_RS02685 -1.3 -5.8 cytochrome C oxidase subunit I compare
BPHYT_RS03740 -1.3 -2.1 hypothetical protein compare
BPHYT_RS09155 -1.3 -3.9 3-ketoacyl-ACP reductase compare
BPHYT_RS05960 -1.3 -6.0 endoribonuclease L-PSP compare
BPHYT_RS18260 -1.3 -6.2 phenylacetic acid degradation protein compare
BPHYT_RS29810 -1.3 -1.1 hexapeptide transferase compare
BPHYT_RS03110 -1.3 -1.8 MarR family transcriptional regulator compare
BPHYT_RS16345 -1.3 -2.3 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS02005 -1.3 -1.3 diguanylate phosphodiesterase compare
BPHYT_RS06915 -1.3 -1.8 hypothetical protein compare
BPHYT_RS21970 -1.3 -3.3 nucleoside hydrolase compare
BPHYT_RS00225 -1.2 -1.4 hypothetical protein compare
BPHYT_RS12990 -1.2 -1.6 iron transporter compare
BPHYT_RS01630 -1.2 -1.3 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS19565 -1.2 -5.4 gamma-glutamyl:cysteine ligase compare
BPHYT_RS17100 -1.2 -3.3 RNA pyrophosphohydrolase compare
BPHYT_RS26820 -1.2 -1.3 LysR family transcriptional regulator compare
BPHYT_RS19620 -1.2 -2.0 general secretion pathway protein GspH compare
BPHYT_RS09515 -1.2 -0.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS04730 -1.2 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS19305 -1.2 -4.6 ATP-dependent DNA helicase Rep compare
BPHYT_RS33805 -1.2 -0.7 hypothetical protein compare
BPHYT_RS15415 -1.2 -6.7 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS13890 -1.2 -2.0 RpiR family transcriptional regulator compare
BPHYT_RS32360 -1.2 -1.2 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS26855 -1.2 -2.1 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS17755 -1.2 -3.6 ABC transporter substrate-binding protein compare
BPHYT_RS30365 -1.2 -0.8 beta-lactamase compare
BPHYT_RS26185 -1.2 -0.9 thioesterase compare
BPHYT_RS28575 -1.2 -0.7 transcriptional regulator compare
BPHYT_RS18590 -1.2 -0.7 hypothetical protein compare
BPHYT_RS09445 -1.2 -2.8 trigger factor compare
BPHYT_RS21385 -1.2 -1.3 short-chain dehydrogenase compare
BPHYT_RS20060 -1.2 -1.0 hypothetical protein compare
BPHYT_RS17640 -1.2 -1.3 2-alkenal reductase compare
BPHYT_RS02155 -1.2 -3.1 dithiobiotin synthetase compare
BPHYT_RS11400 -1.1 -1.7 hypothetical protein compare
BPHYT_RS13160 -1.1 -1.1 membrane protein compare
BPHYT_RS10165 -1.1 -0.7 transcriptional regulator compare
BPHYT_RS12550 -1.1 -0.9 GTP-binding protein HflX compare
BPHYT_RS12590 -1.1 -1.2 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS14140 -1.1 -2.8 phosphate transporter permease subunit PstC compare
BPHYT_RS18265 -1.1 -2.1 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS21650 -1.1 -1.8 cobalamin synthesis protein P47K compare
BPHYT_RS30450 -1.1 -0.8 ABC transporter permease compare
BPHYT_RS13935 -1.1 -1.0 mannosyltransferase compare
BPHYT_RS23910 -1.1 -1.7 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS02415 -1.1 -4.6 cytochrome C550 compare
BPHYT_RS22325 -1.1 -2.7 histidine kinase compare
BPHYT_RS02045 -1.1 -2.4 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS07475 -1.1 -1.1 nitrate reductase compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms