Experiment set38S726 for Burkholderia phytofirmans PsJN

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Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17380 -6.7 -8.0 ribulose-phosphate 3-epimerase compare
BPHYT_RS16270 -6.6 -3.6 phosphoglycerate kinase compare
BPHYT_RS17690 -5.8 -10.4 imidazole glycerol phosphate synthase compare
BPHYT_RS33865 -5.7 -6.8 tryptophan synthase alpha chain compare
BPHYT_RS17400 -5.7 -8.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS03150 -5.6 -10.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS04955 -5.6 -1.5 methionyl-tRNA synthetase compare
BPHYT_RS17670 -5.3 -4.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS15920 -5.3 -8.9 argininosuccinate synthase compare
BPHYT_RS33875 -5.1 -9.1 tryptophan synthase subunit alpha compare
BPHYT_RS15915 -5.0 -6.8 ornithine carbamoyltransferase compare
BPHYT_RS17685 -4.9 -7.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33880 -4.9 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06555 -4.8 -7.7 ketol-acid reductoisomerase compare
BPHYT_RS02590 -4.6 -8.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16835 -4.6 -5.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS04965 -4.5 -7.5 ATP-binding protein compare
BPHYT_RS08955 -4.5 -3.1 homoserine dehydrogenase compare
BPHYT_RS12845 -4.5 -15.3 ATPase compare
BPHYT_RS17405 -4.4 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS17855 -4.3 -16.7 glutamate synthase compare
BPHYT_RS35885 -4.3 -3.6 hypothetical protein compare
BPHYT_RS33835 -4.2 -9.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS06545 -4.1 -9.7 acetolactate synthase compare
BPHYT_RS02610 -4.1 -3.8 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS18320 -4.0 -2.8 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -4.0 -7.9 phosphoserine aminotransferase compare
BPHYT_RS13705 -3.9 -3.1 chorismate synthase compare
BPHYT_RS17675 -3.9 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33645 -3.8 -4.2 homoserine kinase compare
BPHYT_RS01595 -3.7 -10.2 homoserine O-acetyltransferase compare
BPHYT_RS17095 -3.6 -2.4 proline--tRNA ligase compare
BPHYT_RS33840 -3.6 -4.9 amidophosphoribosyltransferase compare
BPHYT_RS18705 -3.6 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS06530 -3.5 -1.3 membrane protein compare
BPHYT_RS17885 -3.5 -2.4 3-dehydroquinate synthase compare
BPHYT_RS23840 -3.5 -2.4 methyltransferase compare
BPHYT_RS33900 -3.5 -9.7 3-isopropylmalate dehydrogenase compare
BPHYT_RS16880 -3.4 -1.5 malic enzyme compare
BPHYT_RS17390 -3.4 -12.2 anthranilate synthase subunit I compare
BPHYT_RS06975 -3.4 -1.8 glutamate racemase compare
BPHYT_RS17715 -3.4 -5.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33915 -3.3 -9.1 isopropylmalate isomerase compare
BPHYT_RS15075 -3.3 -1.5 dihydrokaempferol 4-reductase compare
BPHYT_RS12530 -3.2 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17945 -3.2 -1.9 cytochrome C biogenesis protein compare
BPHYT_RS11125 -3.1 -1.2 alkylhydroperoxidase compare
BPHYT_RS17525 -3.1 -2.3 glutaredoxin compare
BPHYT_RS33610 -3.0 -1.2 DNA polymerase I compare
BPHYT_RS17680 -3.0 -2.7 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06405 -3.0 -4.9 phosphoribosylamine--glycine ligase compare
BPHYT_RS16555 -3.0 -3.4 cation transporter compare
BPHYT_RS02690 -3.0 -10.2 protoheme IX farnesyltransferase compare
BPHYT_RS10100 -3.0 -4.9 dihydroxy-acid dehydratase compare
BPHYT_RS17520 -3.0 -3.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS08245 -3.0 -6.7 anti-sigma factor compare
BPHYT_RS17765 -2.9 -5.6 toluene ABC transporter ATP-binding protein compare
BPHYT_RS06685 -2.9 -1.5 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS17395 -2.9 -1.9 anthranilate synthase subunit II compare
BPHYT_RS16245 -2.9 -2.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33580 -2.8 -3.8 geranyltranstransferase compare
BPHYT_RS14910 -2.8 -8.9 chorismate mutase compare
BPHYT_RS12615 -2.8 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS08960 -2.7 -1.2 threonine synthase compare
BPHYT_RS16065 -2.7 -1.0 LacI family transcriptional regulator compare
BPHYT_RS12060 -2.7 -1.0 hypothetical protein compare
BPHYT_RS16735 -2.7 -4.0 phosphogluconate dehydratase compare
BPHYT_RS17700 -2.7 -2.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06610 -2.6 -1.0 triosephosphate isomerase compare
BPHYT_RS02860 -2.6 -0.7 membrane protein compare
BPHYT_RS14845 -2.6 -2.3 cysteine synthase compare
BPHYT_RS14865 -2.5 -1.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06900 -2.5 -5.2 aspartate aminotransferase compare
BPHYT_RS06375 -2.5 -4.1 ribonuclease compare
BPHYT_RS14755 -2.5 -2.8 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS12990 -2.4 -2.0 iron transporter compare
BPHYT_RS02570 -2.4 -6.0 phosphocarrier protein HPr compare
BPHYT_RS14185 -2.4 -1.8 transcription elongation factor GreA compare
BPHYT_RS25335 -2.4 -0.9 hypothetical protein compare
BPHYT_RS21905 -2.3 -1.0 IclR family transcriptional regulator compare
BPHYT_RS04720 -2.2 -8.4 transcriptional regulator compare
BPHYT_RS12055 -2.2 -11.3 phosphoenolpyruvate synthase compare
BPHYT_RS09500 -2.2 -5.5 glucose-6-phosphate isomerase compare
BPHYT_RS23990 -2.2 -1.1 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS18665 -2.2 -6.1 GumN family protein compare
BPHYT_RS17745 -2.2 -6.3 toluene tolerance family protein compare
BPHYT_RS06390 -2.2 -2.2 ribosome-associated protein IOJAP compare
BPHYT_RS09825 -2.1 -1.9 Fe-S protein compare
BPHYT_RS01585 -2.1 -3.4 major facilitator superfamily protein compare
BPHYT_RS06400 -2.1 -4.4 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS16345 -2.1 -3.2 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS34780 -2.1 -3.1 phytoene synthase compare
BPHYT_RS33920 -2.1 -5.4 type II citrate synthase compare
BPHYT_RS18265 -2.1 -2.8 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS18255 -2.1 -1.6 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS15620 -2.0 -2.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS14855 -2.0 -0.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06550 -2.0 -2.2 acetolactate synthase compare
BPHYT_RS14895 -2.0 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS19565 -2.0 -6.3 gamma-glutamyl:cysteine ligase compare
BPHYT_RS32260 -2.0 -1.0 hypothetical protein compare
BPHYT_RS15415 -2.0 -9.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS17100 -2.0 -4.1 RNA pyrophosphohydrolase compare
BPHYT_RS09145 -2.0 -8.1 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS13935 -2.0 -1.6 mannosyltransferase compare
BPHYT_RS17760 -1.9 -6.1 ABC transporter permease compare
BPHYT_RS20085 -1.9 -1.6 mannosyltransferase compare
BPHYT_RS06600 -1.9 -1.2 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS33905 -1.9 -1.0 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06175 -1.9 -3.3 LPS biosynthesis compare
BPHYT_RS07705 -1.9 -1.5 arginine succinyltransferase compare
BPHYT_RS26490 -1.9 -1.0 hypothetical protein compare
BPHYT_RS12725 -1.9 -10.4 regulator compare
BPHYT_RS02665 -1.9 -7.2 MFS transporter compare
BPHYT_RS02955 -1.9 -7.3 formyltetrahydrofolate deformylase compare
BPHYT_RS33850 -1.9 -1.1 sporulation protein compare
BPHYT_RS25070 -1.8 -1.1 choline ABC transporter permease compare
BPHYT_RS12985 -1.8 -1.0 amino acid acetyltransferase compare
BPHYT_RS19570 -1.8 -9.5 sodium/hydrogen exchanger compare
BPHYT_RS05225 -1.8 -7.1 phosphoenolpyruvate carboxylase compare
BPHYT_RS09000 -1.8 -0.9 competence protein ComE compare
BPHYT_RS13645 -1.8 -10.6 threonine--tRNA ligase compare
BPHYT_RS16840 -1.8 -1.2 transketolase compare
BPHYT_RS11480 -1.7 -2.5 heme ABC transporter ATP-binding protein compare
BPHYT_RS12465 -1.7 -1.2 inositol monophosphatase compare
BPHYT_RS15710 -1.7 -0.8 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS02130 -1.7 -2.4 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS04730 -1.7 -3.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS24285 -1.7 -1.2 TetR family transcriptional regulator compare
BPHYT_RS02685 -1.7 -6.8 cytochrome C oxidase subunit I compare
BPHYT_RS21025 -1.7 -1.0 cation-binding protein compare
BPHYT_RS25970 -1.7 -0.8 urea amidolyase compare
BPHYT_RS27715 -1.7 -1.6 UspA domain-containing protein compare
BPHYT_RS18590 -1.7 -0.7 hypothetical protein compare
BPHYT_RS03570 -1.6 -4.6 heat-inducible transcription repressor HrcA compare
BPHYT_RS36275 -1.6 -1.0 hypothetical protein compare
BPHYT_RS02640 -1.6 -8.0 cytochrome C oxidase compare
BPHYT_RS02525 -1.6 -2.1 membrane protein compare
BPHYT_RS14400 -1.6 -2.4 anti-sigma factor compare
BPHYT_RS04595 -1.6 -1.5 cytoplasmic protein compare
BPHYT_RS16905 -1.6 -2.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS35955 -1.6 -1.0 hypothetical protein compare
BPHYT_RS03685 -1.6 -2.5 Tol system periplasmic component YbgF compare
BPHYT_RS26880 -1.5 -1.7 ketosteroid isomerase compare
BPHYT_RS21495 -1.5 -0.9 ABC transporter compare
BPHYT_RS08945 -1.5 -6.6 hypothetical protein compare
BPHYT_RS11075 -1.5 -2.0 membrane protein compare
BPHYT_RS23230 -1.5 -0.8 histidine kinase compare
BPHYT_RS33155 -1.5 -1.9 hypothetical protein compare
BPHYT_RS35275 -1.5 -1.2 acetyltransferase compare
BPHYT_RS05235 -1.5 -1.1 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS09330 -1.5 -4.9 phytoene synthase compare
BPHYT_RS14195 -1.5 -1.7 carbamoyl phosphate synthase small subunit compare
BPHYT_RS24350 -1.5 -1.6 hypothetical protein compare
BPHYT_RS25470 -1.5 -1.2 alkylhydroperoxidase compare
BPHYT_RS02760 -1.5 -0.5 cytochrome BD oxidase subunit II compare
BPHYT_RS01955 -1.5 -3.2 hypothetical protein compare
BPHYT_RS03625 -1.5 -6.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS00855 -1.4 -1.6 hypothetical protein compare
BPHYT_RS30465 -1.4 -0.9 short-chain dehydrogenase compare
BPHYT_RS14190 -1.4 -3.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS05010 -1.4 -2.6 RpiR family transcriptional regulator compare
BPHYT_RS03280 -1.4 -1.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS00980 -1.4 -0.9 GCN5 family acetyltransferase compare
BPHYT_RS13605 -1.4 -0.9 tRNA-Pro compare
BPHYT_RS28600 -1.4 -1.3 ArsC family transcriptional regulator compare
BPHYT_RS14380 -1.4 -3.2 elongation factor 4 compare
BPHYT_RS18260 -1.4 -5.9 phenylacetic acid degradation protein compare
BPHYT_RS30010 -1.4 -1.1 cell division protein compare
BPHYT_RS22540 -1.4 -1.5 metal ABC transporter permease compare
BPHYT_RS06985 -1.4 -5.1 fumarate hydratase compare
BPHYT_RS16135 -1.4 -5.5 ABC transporter ATP-binding protein compare
BPHYT_RS06075 -1.4 -3.8 hypothetical protein compare
BPHYT_RS26675 -1.4 -1.1 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS29035 -1.4 -1.3 arsenic transporter compare
BPHYT_RS12380 -1.4 -2.8 ABC transporter permease compare
BPHYT_RS10355 -1.4 -1.5 nitrate reductase compare
BPHYT_RS26855 -1.4 -2.2 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS12590 -1.4 -1.1 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS03725 -1.3 -0.6 serine hydroxymethyltransferase compare
BPHYT_RS10095 -1.3 -1.0 integrase compare
BPHYT_RS06045 -1.3 -4.4 transaldolase compare
BPHYT_RS34810 -1.3 -3.0 RND transporter compare
BPHYT_RS14060 -1.3 -1.1 peptidase M23 compare
BPHYT_RS35215 -1.3 -0.9 dehydrogenase compare
BPHYT_RS11235 -1.3 -0.8 hypothetical protein compare
BPHYT_RS06535 -1.3 -1.9 membrane protein compare
BPHYT_RS02885 -1.3 -4.9 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS09160 -1.3 -3.2 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS12150 -1.3 -6.6 PII uridylyl-transferase compare
BPHYT_RS06990 -1.3 -1.0 membrane protein compare
BPHYT_RS15865 -1.3 -3.2 exodeoxyribonuclease VII large subunit compare
BPHYT_RS01280 -1.3 -1.4 hypothetical protein compare
BPHYT_RS01485 -1.3 -0.4 histidine kinase compare
BPHYT_RS14485 -1.3 -3.1 ribonuclease E compare
BPHYT_RS35650 -1.3 -2.9 DSBA oxidoreductase compare
BPHYT_RS33870 -1.3 -4.5 DNA methylase N-4 compare
BPHYT_RS33045 -1.3 -1.1 response regulator receiver protein compare
BPHYT_RS03470 -1.2 -3.7 LysR family transcriptional regulator compare
BPHYT_RS16130 -1.2 -3.8 cation ABC transporter substrate-binding protein compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms