Experiment set38S679 for Burkholderia phytofirmans PsJN

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Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -6.3 -3.0 phosphoglycerate kinase compare
BPHYT_RS16835 -6.0 -4.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17670 -5.8 -3.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS02610 -5.7 -3.0 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17690 -5.7 -10.9 imidazole glycerol phosphate synthase compare
BPHYT_RS17380 -5.6 -9.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS17685 -5.5 -8.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS04955 -5.5 -1.3 methionyl-tRNA synthetase compare
BPHYT_RS06555 -5.4 -5.2 ketol-acid reductoisomerase compare
BPHYT_RS33865 -5.1 -7.0 tryptophan synthase alpha chain compare
BPHYT_RS04965 -5.0 -5.9 ATP-binding protein compare
BPHYT_RS12845 -4.9 -14.4 ATPase compare
BPHYT_RS17675 -4.8 -1.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS03150 -4.7 -13.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15915 -4.6 -7.1 ornithine carbamoyltransferase compare
BPHYT_RS17680 -4.6 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS02570 -4.5 -4.4 phosphocarrier protein HPr compare
BPHYT_RS33645 -4.5 -3.0 homoserine kinase compare
BPHYT_RS15920 -4.3 -12.0 argininosuccinate synthase compare
BPHYT_RS08955 -4.3 -2.8 homoserine dehydrogenase compare
BPHYT_RS17405 -4.2 -1.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS17400 -4.1 -7.4 anthranilate phosphoribosyltransferase compare
BPHYT_RS02590 -4.0 -7.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS13705 -4.0 -3.0 chorismate synthase compare
BPHYT_RS33875 -3.9 -8.5 tryptophan synthase subunit alpha compare
BPHYT_RS17715 -3.9 -7.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS18320 -3.8 -2.6 orotate phosphoribosyltransferase compare
BPHYT_RS17395 -3.8 -1.5 anthranilate synthase subunit II compare
BPHYT_RS33580 -3.7 -2.5 geranyltranstransferase compare
BPHYT_RS06545 -3.6 -7.9 acetolactate synthase compare
BPHYT_RS12530 -3.5 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16090 -3.5 -1.2 hypothetical protein compare
BPHYT_RS33835 -3.5 -8.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS01585 -3.5 -5.5 major facilitator superfamily protein compare
BPHYT_RS17920 -3.5 -0.8 protein CyaY compare
BPHYT_RS33880 -3.4 -5.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06530 -3.4 -1.1 membrane protein compare
BPHYT_RS14865 -3.4 -1.4 UDP-glucose 6-dehydrogenase compare
BPHYT_RS17095 -3.4 -1.9 proline--tRNA ligase compare
BPHYT_RS08245 -3.3 -6.0 anti-sigma factor compare
BPHYT_RS10100 -3.3 -3.0 dihydroxy-acid dehydratase compare
BPHYT_RS17945 -3.3 -1.5 cytochrome C biogenesis protein compare
BPHYT_RS06900 -3.3 -4.8 aspartate aminotransferase compare
BPHYT_RS17855 -3.2 -15.8 glutamate synthase compare
BPHYT_RS23840 -3.2 -3.5 methyltransferase compare
BPHYT_RS03685 -3.2 -2.5 Tol system periplasmic component YbgF compare
BPHYT_RS33840 -3.2 -4.8 amidophosphoribosyltransferase compare
BPHYT_RS14915 -3.1 -5.6 phosphoserine aminotransferase compare
BPHYT_RS17520 -3.1 -2.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS17885 -3.0 -3.5 3-dehydroquinate synthase compare
BPHYT_RS17700 -3.0 -2.5 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS03280 -2.9 -1.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS04455 -2.9 -0.9 glycosyl transferase compare
BPHYT_RS17390 -2.9 -14.9 anthranilate synthase subunit I compare
BPHYT_RS10540 -2.8 -0.9 secretion protein compare
BPHYT_RS14845 -2.8 -2.0 cysteine synthase compare
BPHYT_RS05010 -2.8 -3.4 RpiR family transcriptional regulator compare
BPHYT_RS36400 -2.7 -0.9 hypothetical protein compare
BPHYT_RS14060 -2.7 -1.4 peptidase M23 compare
BPHYT_RS01595 -2.7 -8.2 homoserine O-acetyltransferase compare
BPHYT_RS14195 -2.7 -1.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS33920 -2.7 -4.7 type II citrate synthase compare
BPHYT_RS16180 -2.7 -0.6 TetR family transcriptional regulator compare
BPHYT_RS16245 -2.7 -1.6 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS08235 -2.7 -0.6 nucleoprotein, Hfg, host factor I compare
BPHYT_RS16905 -2.6 -2.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12055 -2.6 -14.1 phosphoenolpyruvate synthase compare
BPHYT_RS01455 -2.6 -0.8 peptide deformylase compare
BPHYT_RS14910 -2.6 -9.2 chorismate mutase compare
BPHYT_RS12060 -2.6 -0.8 hypothetical protein compare
BPHYT_RS12615 -2.6 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS17760 -2.5 -4.9 ABC transporter permease compare
BPHYT_RS06610 -2.5 -0.8 triosephosphate isomerase compare
BPHYT_RS35885 -2.5 -2.2 hypothetical protein compare
BPHYT_RS16135 -2.5 -6.5 ABC transporter ATP-binding protein compare
BPHYT_RS33915 -2.5 -5.1 isopropylmalate isomerase compare
BPHYT_RS08960 -2.5 -1.0 threonine synthase compare
BPHYT_RS02860 -2.5 -0.6 membrane protein compare
BPHYT_RS02690 -2.5 -6.5 protoheme IX farnesyltransferase compare
BPHYT_RS06410 -2.5 -2.1 transcriptional regulator compare
BPHYT_RS32210 -2.5 -1.3 hypothetical protein compare
BPHYT_RS12280 -2.4 -0.8 RNA helicase compare
BPHYT_RS26080 -2.4 -1.0 ABC transporter ATPase compare
BPHYT_RS33900 -2.4 -7.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS17765 -2.4 -4.1 toluene ABC transporter ATP-binding protein compare
BPHYT_RS34780 -2.4 -3.4 phytoene synthase compare
BPHYT_RS31910 -2.4 -1.1 hypothetical protein compare
BPHYT_RS23990 -2.4 -0.9 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS18665 -2.4 -7.8 GumN family protein compare
BPHYT_RS29085 -2.3 -1.2 LysR family transcriptional regulator compare
BPHYT_RS27145 -2.3 -1.6 TetR family transcriptional regulator compare
BPHYT_RS14895 -2.3 -2.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS13605 -2.3 -0.9 tRNA-Pro compare
BPHYT_RS16130 -2.3 -6.8 cation ABC transporter substrate-binding protein compare
BPHYT_RS02985 -2.2 -1.8 MaoC family dehydratase compare
BPHYT_RS09500 -2.2 -4.1 glucose-6-phosphate isomerase compare
BPHYT_RS14755 -2.2 -2.3 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS15620 -2.2 -1.9 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS19565 -2.2 -5.8 gamma-glutamyl:cysteine ligase compare
BPHYT_RS06375 -2.2 -3.3 ribonuclease compare
BPHYT_RS25020 -2.2 -1.2 phospholipid-binding protein compare
BPHYT_RS06175 -2.2 -3.7 LPS biosynthesis compare
BPHYT_RS13645 -2.2 -12.4 threonine--tRNA ligase compare
BPHYT_RS16735 -2.1 -4.6 phosphogluconate dehydratase compare
BPHYT_RS20060 -2.1 -1.0 hypothetical protein compare
BPHYT_RS16555 -2.1 -3.0 cation transporter compare
BPHYT_RS09755 -2.1 -1.2 glycosyl transferase family 1 compare
BPHYT_RS16340 -2.1 -3.4 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS23455 -2.1 -0.8 phosphorylase compare
BPHYT_RS22865 -2.1 -2.4 ATPase compare
BPHYT_RS02665 -2.0 -9.7 MFS transporter compare
BPHYT_RS12725 -2.0 -9.5 regulator compare
BPHYT_RS07515 -2.0 -1.7 photosystem reaction center subunit H compare
BPHYT_RS16085 -2.0 -2.5 DeoR faimly transcriptional regulator compare
BPHYT_RS09620 -2.0 -1.7 aminodeoxychorismate lyase compare
BPHYT_RS19570 -2.0 -7.8 sodium/hydrogen exchanger compare
BPHYT_RS17905 -2.0 -1.8 fimbrial assembly family protein compare
BPHYT_RS06075 -2.0 -4.3 hypothetical protein compare
BPHYT_RS09315 -2.0 -0.4 chemotaxis protein CheY compare
BPHYT_RS02640 -2.0 -7.9 cytochrome C oxidase compare
BPHYT_RS06405 -1.9 -3.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS19660 -1.9 -1.2 hypothetical protein compare
BPHYT_RS21485 -1.9 -0.7 hypothetical protein compare
BPHYT_RS03170 -1.9 -1.4 membrane protein compare
BPHYT_RS17525 -1.9 -1.4 glutaredoxin compare
BPHYT_RS28830 -1.9 -0.8 LysR family transcriptional regulator compare
BPHYT_RS05960 -1.8 -4.9 endoribonuclease L-PSP compare
BPHYT_RS07705 -1.8 -1.4 arginine succinyltransferase compare
BPHYT_RS29105 -1.8 -1.7 class V aminotransferase compare
BPHYT_RS17745 -1.8 -3.4 toluene tolerance family protein compare
BPHYT_RS34125 -1.8 -3.5 heavy metal translocating P-type ATPase compare
BPHYT_RS17030 -1.8 -0.9 lipid hydroperoxide peroxidase compare
BPHYT_RS11480 -1.8 -2.5 heme ABC transporter ATP-binding protein compare
BPHYT_RS02650 -1.8 -1.1 membrane protein compare
BPHYT_RS26550 -1.8 -1.1 Fis family transcriptional regulator compare
BPHYT_RS03570 -1.8 -3.8 heat-inducible transcription repressor HrcA compare
BPHYT_RS03645 -1.8 -1.3 tRNA dimethylallyltransferase compare
BPHYT_RS22325 -1.8 -2.2 histidine kinase compare
BPHYT_RS09145 -1.8 -6.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS13890 -1.7 -2.0 RpiR family transcriptional regulator compare
BPHYT_RS28705 -1.7 -0.7 IclR family transcriptional regulator compare
BPHYT_RS03655 -1.7 -0.8 membrane protein compare
BPHYT_RS07570 -1.7 -0.8 hypothetical protein compare
BPHYT_RS14505 -1.7 -1.6 membrane protein compare
BPHYT_RS36220 -1.7 -0.5 hypothetical protein compare
BPHYT_RS17075 -1.7 -2.2 ABC transporter permease compare
BPHYT_RS06550 -1.7 -1.7 acetolactate synthase compare
BPHYT_RS16210 -1.7 -3.0 peptidase compare
BPHYT_RS28485 -1.7 -0.8 GntR family transcriptional regulator compare
BPHYT_RS33850 -1.7 -0.9 sporulation protein compare
BPHYT_RS27175 -1.7 -0.5 DNA-binding protein compare
BPHYT_RS11170 -1.7 -0.8 hypothetical protein compare
BPHYT_RS12465 -1.6 -0.7 inositol monophosphatase compare
BPHYT_RS11745 -1.6 -0.6 (2Fe-2S)-binding protein compare
BPHYT_RS04010 -1.6 -0.8 glycosyl transferase compare
BPHYT_RS02525 -1.6 -3.3 membrane protein compare
BPHYT_RS18255 -1.6 -1.3 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS16880 -1.6 -0.8 malic enzyme compare
BPHYT_RS33610 -1.6 -0.9 DNA polymerase I compare
BPHYT_RS25585 -1.6 -1.1 membrane protein compare
BPHYT_RS06065 -1.6 -6.6 cytochrome C compare
BPHYT_RS14185 -1.6 -1.3 transcription elongation factor GreA compare
BPHYT_RS25470 -1.6 -1.0 alkylhydroperoxidase compare
BPHYT_RS05940 -1.6 -2.8 membrane protein compare
BPHYT_RS30290 -1.6 -1.5 MFS transporter compare
BPHYT_RS12985 -1.6 -0.7 amino acid acetyltransferase compare
BPHYT_RS02885 -1.6 -7.1 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS32395 -1.6 -0.6 hypothetical protein compare
BPHYT_RS28055 -1.6 -2.0 membrane protein compare
BPHYT_RS02045 -1.6 -3.1 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS17100 -1.6 -4.0 RNA pyrophosphohydrolase compare
BPHYT_RS13160 -1.6 -0.9 membrane protein compare
BPHYT_RS27655 -1.6 -1.0 potassium transporter compare
BPHYT_RS05285 -1.6 -1.0 hypothetical protein compare
BPHYT_RS33155 -1.5 -1.5 hypothetical protein compare
BPHYT_RS24315 -1.5 -0.8 phosphoribosyltransferase compare
BPHYT_RS16840 -1.5 -1.0 transketolase compare
BPHYT_RS13345 -1.5 -2.2 crotonase compare
BPHYT_RS00770 -1.5 -0.8 conjugal transfer protein TraC compare
BPHYT_RS10985 -1.5 -1.6 MFS transporter compare
BPHYT_RS30505 -1.5 -1.3 ABC transporter permease compare
BPHYT_RS34810 -1.5 -2.7 RND transporter compare
BPHYT_RS15710 -1.5 -0.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS20025 -1.5 -1.0 crotonase compare
BPHYT_RS17165 -1.5 -2.1 cell division protein ZapD compare
BPHYT_RS26025 -1.5 -0.6 hypothetical protein compare
BPHYT_RS04370 -1.5 -0.7 glycosyl transferase compare
BPHYT_RS10240 -1.5 -0.7 translation initiation inhibitor compare
BPHYT_RS04730 -1.5 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04745 -1.5 -4.2 sulfate adenylyltransferase compare
BPHYT_RS25970 -1.5 -0.7 urea amidolyase compare
BPHYT_RS18590 -1.5 -0.6 hypothetical protein compare
BPHYT_RS03405 -1.5 -2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
BPHYT_RS30100 -1.5 -1.3 copper oxidase compare
BPHYT_RS17445 -1.4 -2.3 GTP-binding protein YchF compare
BPHYT_RS17890 -1.4 -0.6 shikimate kinase compare
BPHYT_RS09465 -1.4 -1.0 transcriptional regulator compare
BPHYT_RS01115 -1.4 -1.5 hypothetical protein compare
BPHYT_RS14450 -1.4 -2.5 hypothetical protein compare
BPHYT_RS17755 -1.4 -2.3 ABC transporter substrate-binding protein compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms