Experiment set38S678 for Burkholderia phytofirmans PsJN

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Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS03830 +5.5 1.9 hypothetical protein compare
BPHYT_RS33820 +4.2 13.2 histidine kinase compare
BPHYT_RS01095 +3.0 3.8 hypothetical protein compare
BPHYT_RS05575 +2.9 8.8 Fis family transcriptional regulator compare
BPHYT_RS04290 +2.9 3.6 glycosyl transferase family 2 compare
BPHYT_RS26470 +2.7 3.5 MFS transporter compare
BPHYT_RS02595 +2.6 1.4 sulfurtransferase compare
BPHYT_RS11215 +2.5 14.6 ribose ABC transporter ATPase compare
BPHYT_RS10345 +2.3 2.1 flagellar motor protein MotB compare
BPHYT_RS22295 +2.2 2.5 LysR family transcriptional regulator compare
BPHYT_RS23370 +2.2 4.4 glycosyl transferase family 1 compare
BPHYT_RS29310 +2.2 3.7 oxidoreductase compare
BPHYT_RS13295 +2.1 2.5 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS05590 +2.1 9.5 trehalose-6-phosphate synthase compare
BPHYT_RS27405 +2.1 2.1 aldehyde dehydrogenase compare
BPHYT_RS10125 +2.1 3.6 hypothetical protein compare
BPHYT_RS11705 +2.0 2.4 hypothetical protein compare
BPHYT_RS20505 +2.0 2.7 carboxymethylenebutenolidase compare
BPHYT_RS29110 +1.9 2.2 DNA-directed DNA polymerase compare
BPHYT_RS15515 +1.9 3.7 D-aminopeptidase compare
BPHYT_RS30845 +1.8 1.3 polyketide cyclase compare
BPHYT_RS30645 +1.8 1.6 hypothetical protein compare
BPHYT_RS07370 +1.8 1.6 hypothetical protein compare
BPHYT_RS30365 +1.8 2.0 beta-lactamase compare
BPHYT_RS27100 +1.8 6.6 RNase II stability modulator compare
BPHYT_RS25870 +1.8 1.7 type III secretion system ATPase compare
BPHYT_RS20725 +1.7 1.6 histidine kinase compare
BPHYT_RS26265 +1.7 1.2 FAD-dependent pyridine nucleotide-disulfide oxidoreductase compare
BPHYT_RS00160 +1.7 3.3 ABC transporter substrate-binding protein compare
BPHYT_RS26390 +1.7 1.3 antibiotic resistance protein compare
BPHYT_RS02435 +1.7 1.7 hypothetical protein compare
BPHYT_RS07585 +1.7 1.2 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
BPHYT_RS08305 +1.6 2.1 membrane protein compare
BPHYT_RS23255 +1.6 1.4 TetR family transcriptional regulator compare
BPHYT_RS18785 +1.6 3.5 flagellar assembly protein FliH compare
BPHYT_RS14670 +1.6 1.4 hypothetical protein compare
BPHYT_RS10850 +1.6 1.7 LysR family transcriptional regulator compare
BPHYT_RS31345 +1.6 1.6 malonate transporter compare
BPHYT_RS10240 +1.5 1.7 translation initiation inhibitor compare
BPHYT_RS33240 +1.5 1.0 membrane protein compare
BPHYT_RS25545 +1.5 2.5 hypothetical protein compare
BPHYT_RS32150 +1.5 1.3 hypothetical protein compare
BPHYT_RS05560 +1.5 2.7 Fis family transcriptional regulator compare
BPHYT_RS36340 +1.5 2.2 hypothetical protein compare
BPHYT_RS09660 +1.5 3.4 trehalose-6-phosphate synthase compare
BPHYT_RS12950 +1.5 4.2 sulfurtransferase compare
BPHYT_RS09280 +1.5 1.7 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS15775 +1.5 2.0 peptide ABC transporter permease compare
BPHYT_RS09690 +1.4 2.0 phosphate starvation-inducible protein PsiF compare
BPHYT_RS05910 +1.4 1.2 hypothetical protein compare
BPHYT_RS36220 +1.4 1.3 hypothetical protein compare
BPHYT_RS04385 +1.4 2.3 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS09385 +1.4 1.4 FAD-dependent oxidoreductase compare
BPHYT_RS04560 +1.4 2.6 Hcp1 family type VI secretion system effector compare
BPHYT_RS09095 +1.4 1.1 NADPH:quinone oxidoreductase compare
BPHYT_RS34765 +1.4 1.3 chemotaxis protein compare
BPHYT_RS13475 +1.4 1.7 2-keto-gluconate dehydrogenase compare
BPHYT_RS06270 +1.3 2.0 glyoxalase compare
BPHYT_RS09645 +1.3 2.1 ankyrin compare
BPHYT_RS35400 +1.3 2.1 ABC transporter compare
BPHYT_RS26055 +1.3 3.3 ABC transporter substrate-binding protein compare
BPHYT_RS31060 +1.3 1.0 capsular polysaccharide biosynthesis protein compare
BPHYT_RS05725 +1.3 3.0 hypothetical protein compare
BPHYT_RS32335 +1.3 2.4 AsnC family transcriptional regulator compare
BPHYT_RS21635 +1.3 2.0 extradiol dioxygenase compare
BPHYT_RS15585 +1.3 3.5 acetyltransferase compare
BPHYT_RS05650 +1.3 1.5 hypothetical protein compare
BPHYT_RS11410 +1.3 1.7 TetR family transcriptional regulator compare
BPHYT_RS30920 +1.3 2.2 hypothetical protein compare
BPHYT_RS35905 +1.2 1.9 hypothetical protein compare
BPHYT_RS14660 +1.2 1.2 hypothetical protein compare
BPHYT_RS34155 +1.2 2.0 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS21780 +1.2 1.5 MFS transporter compare
BPHYT_RS34100 +1.2 1.8 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS12060 +1.2 1.2 hypothetical protein compare
BPHYT_RS13660 +1.2 1.3 aminoacrylate peracid reductase compare
BPHYT_RS23435 +1.2 1.6 MFS transporter compare
BPHYT_RS00975 +1.2 4.6 arsenic transporter compare
BPHYT_RS28090 +1.2 2.6 ferredoxin compare
BPHYT_RS08570 +1.2 1.6 arginyl-tRNA-protein transferase compare
BPHYT_RS08685 +1.2 1.7 hypothetical protein compare
BPHYT_RS01790 +1.2 7.7 LuxR family transcriptional regulator compare
BPHYT_RS02390 +1.1 0.9 ABC transporter substrate-binding protein compare
BPHYT_RS30935 +1.1 2.2 MFS transporter compare
BPHYT_RS13040 +1.1 1.5 hypothetical protein compare
BPHYT_RS23035 +1.1 1.3 hypothetical protein compare
BPHYT_RS25655 +1.1 2.0 short-chain dehydrogenase compare
BPHYT_RS25075 +1.1 1.5 AraC family transcriptional regulator compare
BPHYT_RS00380 +1.1 3.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14250 +1.1 5.3 glycosyl transferase compare
BPHYT_RS30165 +1.1 1.9 sarcosine oxidase subunit beta compare
BPHYT_RS21705 +1.1 2.0 sulfoacetaldehyde acetyltransferase compare
BPHYT_RS28670 +1.1 3.0 MFS transporter compare
BPHYT_RS10995 +1.1 1.8 GntR family transcriptional regulator compare
BPHYT_RS34040 +1.1 2.7 hypothetical protein compare
BPHYT_RS02100 +1.1 1.3 AsnC family transcriptional regulator compare
BPHYT_RS33630 +1.1 1.7 chromate transporter compare
BPHYT_RS04220 +1.1 2.0 hypothetical protein compare
BPHYT_RS25320 +1.1 3.3 cobalamin biosynthesis protein CobW compare
BPHYT_RS35750 +1.1 1.2 hypothetical protein compare
BPHYT_RS16815 +1.1 1.6 ureidoglycolate hydrolase compare
BPHYT_RS20715 +1.1 1.3 peptidase compare
BPHYT_RS04060 +1.1 1.8 glycosyl transferase compare
BPHYT_RS10540 +1.0 1.0 secretion protein compare
BPHYT_RS09880 +1.0 1.9 MFS transporter compare
BPHYT_RS10560 +1.0 2.3 hypothetical protein compare
BPHYT_RS11020 +1.0 2.4 transporter compare
BPHYT_RS14950 +1.0 2.9 hypothetical protein compare
BPHYT_RS20360 +1.0 1.3 beta-lactamase compare
BPHYT_RS29710 +1.0 2.6 FAD-binding molybdopterin dehydrogenase compare
BPHYT_RS13555 +1.0 0.9 acyl-CoA dehydrogenase compare
BPHYT_RS14735 +1.0 1.0 hypothetical protein compare
BPHYT_RS31685 +1.0 2.4 D-isomer specific 2-hydroxyacid dehydrogenase compare
BPHYT_RS34655 +1.0 0.6 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS31320 +1.0 1.6 hypothetical protein compare
BPHYT_RS29780 +1.0 2.8 DSBA oxidoreductase compare
BPHYT_RS24490 +1.0 1.9 hypothetical protein compare
BPHYT_RS17490 +1.0 1.8 haloacid dehalogenase compare
BPHYT_RS11435 +1.0 1.8 putrescine/spermidine ABC transporter permease compare
BPHYT_RS08985 +1.0 2.2 Rrf2 family transcriptional regulator compare
BPHYT_RS26730 +1.0 2.7 membrane protein compare
BPHYT_RS21350 +1.0 1.8 ADP-glucose pyrophosphorylase compare
BPHYT_RS27680 +1.0 1.6 arginine deiminase compare
BPHYT_RS07250 +1.0 1.7 4-hydroxy-2-oxovalerate aldolase compare
BPHYT_RS25095 +1.0 1.6 AraC family transcriptional regulator compare
BPHYT_RS34920 +1.0 1.9 IclR family transcriptional regulator compare
BPHYT_RS24480 +1.0 2.5 molybdopterin binding oxidoreductase compare
BPHYT_RS02905 +1.0 6.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS05615 +1.0 1.3 hypothetical protein compare
BPHYT_RS20165 +1.0 1.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS06735 +1.0 2.2 glutathione S-transferase compare
BPHYT_RS29620 +1.0 0.6 hypothetical protein compare
BPHYT_RS11210 +0.9 1.7 ABC transporter permease compare
BPHYT_RS30860 +0.9 1.8 sugar ABC transporter permease compare
BPHYT_RS28330 +0.9 2.4 transcriptional regulator compare
BPHYT_RS05395 +0.9 1.1 hypothetical protein compare
BPHYT_RS21575 +0.9 2.0 hypothetical protein compare
BPHYT_RS19025 +0.9 4.2 transcriptional regulator compare
BPHYT_RS10875 +0.9 1.5 transporter compare
BPHYT_RS15105 +0.9 2.0 FAD-dependent oxidoreductase compare
BPHYT_RS14340 +0.9 4.3 Fis family transcriptional regulator compare
BPHYT_RS10635 +0.9 0.8 transcriptional regulator compare
BPHYT_RS10860 +0.9 1.2 transcriptional regulator compare
BPHYT_RS29890 +0.9 1.5 LysR family transcriptional regulator compare
BPHYT_RS12235 +0.9 2.1 DNA repair protein RadA compare
BPHYT_RS35735 +0.9 1.1 nitroreductase compare
BPHYT_RS02740 +0.9 1.9 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) compare
BPHYT_RS20690 +0.9 1.6 ABC transporter permease compare
BPHYT_RS08240 +0.9 6.4 RNA polymerase subunit sigma-24 compare
BPHYT_RS08995 +0.9 1.0 hypothetical protein compare
BPHYT_RS30210 +0.9 2.2 GCN5 family acetyltransferase compare
BPHYT_RS15320 +0.9 1.2 hypothetical protein compare
BPHYT_RS31615 +0.9 1.2 thiamine pyrophosphate protein compare
BPHYT_RS31205 +0.9 1.3 peptide ABC transporter ATP-binding protein compare
BPHYT_RS34970 +0.9 1.1 hypothetical protein compare
BPHYT_RS24105 +0.9 1.7 chloroperoxidase compare
BPHYT_RS11995 +0.9 1.5 flagellar hook protein FlgE compare
BPHYT_RS08190 +0.9 1.2 type II secretion system protein compare
BPHYT_RS36320 +0.9 2.4 type IV secretion system family protein compare
BPHYT_RS23495 +0.9 1.8 thioredoxin reductase compare
BPHYT_RS07300 +0.9 1.1 porin compare
BPHYT_RS02475 +0.9 1.2 membrane protein compare
BPHYT_RS27960 +0.9 1.0 ABC transporter ATP-binding protein compare
BPHYT_RS22480 +0.9 1.9 cytochrome C551 compare
BPHYT_RS17370 +0.9 1.7 membrane protein compare
BPHYT_RS20600 +0.9 1.7 peroxiredoxin compare
BPHYT_RS29015 +0.9 1.0 RND transporter compare
BPHYT_RS01795 +0.9 5.4 histidine kinase compare
BPHYT_RS32540 +0.9 2.0 hypothetical protein compare
BPHYT_RS00830 +0.9 1.8 DNA primase compare
BPHYT_RS18975 +0.8 1.4 chemotaxis protein CheD compare
BPHYT_RS16070 +0.8 1.6 AraC family transcriptional regulator compare
BPHYT_RS31100 +0.8 1.1 AraC family transcriptional regulator compare
BPHYT_RS28960 +0.8 1.4 histidine kinase compare
BPHYT_RS04910 +0.8 0.9 phenylacetic acid degradation protein compare
BPHYT_RS07650 +0.8 1.8 sulfurtransferase compare
BPHYT_RS20470 +0.8 1.7 hypothetical protein compare
BPHYT_RS31790 +0.8 1.8 methyl-accepting chemotaxis sensory transducer compare
BPHYT_RS16120 +0.8 2.0 sorbitol dehydrogenase, D-fructose forming (EC 1.1.1.14) (from data) compare
BPHYT_RS30610 +0.8 1.4 major facilitator transporter compare
BPHYT_RS14500 +0.8 1.7 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS12160 +0.8 2.2 peptide deformylase compare
BPHYT_RS00095 +0.8 1.7 AraC family transcriptional regulator compare
BPHYT_RS35420 +0.8 2.3 alanine dehydrogenase compare
BPHYT_RS34250 +0.8 3.7 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) compare
BPHYT_RS00370 +0.8 1.8 ABC transporter ATP-binding protein compare
BPHYT_RS34940 +0.8 1.7 3-phenylpropionate dioxygenase compare
BPHYT_RS28345 +0.8 2.0 CDP-diacylglycerol diphosphatase compare
BPHYT_RS03015 +0.8 0.5 aldolase compare
BPHYT_RS13130 +0.8 1.0 metallophosphatase compare
BPHYT_RS24545 +0.8 1.6 ribonucleoside-diphosphate reductase compare
BPHYT_RS16420 +0.8 2.7 copper resistance protein CopD compare
BPHYT_RS11405 +0.8 1.8 hypothetical protein compare
BPHYT_RS23520 +0.8 1.3 peroxidase compare
BPHYT_RS10800 +0.8 3.2 LysR family transcriptional regulator compare
BPHYT_RS23030 +0.8 0.9 gluconate 2-dehydrogenase compare
BPHYT_RS30520 +0.8 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS28065 +0.8 1.0 hypothetical protein compare
BPHYT_RS13470 +0.8 0.5 arylsulfate sulfotransferase compare
BPHYT_RS14880 +0.8 1.6 integration host factor subunit beta compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days across organisms