Experiment set38S674 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -6.5 -3.7 phosphoglycerate kinase compare
BPHYT_RS17685 -5.8 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS16835 -5.6 -6.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17690 -5.5 -10.7 imidazole glycerol phosphate synthase compare
BPHYT_RS04955 -5.5 -1.6 methionyl-tRNA synthetase compare
BPHYT_RS03150 -5.4 -14.3 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17380 -5.3 -9.2 ribulose-phosphate 3-epimerase compare
BPHYT_RS23840 -5.2 -4.1 methyltransferase compare
BPHYT_RS33865 -4.8 -7.3 tryptophan synthase alpha chain compare
BPHYT_RS17680 -4.8 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06545 -4.6 -9.9 acetolactate synthase compare
BPHYT_RS13705 -4.6 -2.9 chorismate synthase compare
BPHYT_RS12615 -4.6 -1.3 dihydrodipicolinate synthase compare
BPHYT_RS12845 -4.5 -15.0 ATPase compare
BPHYT_RS08955 -4.4 -3.0 homoserine dehydrogenase compare
BPHYT_RS17405 -4.4 -1.2 indole-3-glycerol phosphate synthase compare
BPHYT_RS17675 -4.3 -2.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33875 -4.2 -9.8 tryptophan synthase subunit alpha compare
BPHYT_RS02610 -4.2 -3.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS15920 -4.1 -11.9 argininosuccinate synthase compare
BPHYT_RS18320 -4.0 -2.8 orotate phosphoribosyltransferase compare
BPHYT_RS14915 -4.0 -7.9 phosphoserine aminotransferase compare
BPHYT_RS06555 -4.0 -8.0 ketol-acid reductoisomerase compare
BPHYT_RS04965 -3.9 -8.3 ATP-binding protein compare
BPHYT_RS17395 -3.9 -1.9 anthranilate synthase subunit II compare
BPHYT_RS15915 -3.9 -10.0 ornithine carbamoyltransferase compare
BPHYT_RS02590 -3.9 -8.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14755 -3.9 -3.1 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS06900 -3.7 -4.4 aspartate aminotransferase compare
BPHYT_RS17400 -3.7 -6.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS17095 -3.6 -2.5 proline--tRNA ligase compare
BPHYT_RS33840 -3.6 -3.4 amidophosphoribosyltransferase compare
BPHYT_RS14865 -3.5 -1.7 UDP-glucose 6-dehydrogenase compare
BPHYT_RS33880 -3.5 -6.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06530 -3.4 -1.3 membrane protein compare
BPHYT_RS33645 -3.4 -3.9 homoserine kinase compare
BPHYT_RS17715 -3.4 -9.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS02525 -3.4 -7.2 membrane protein compare
BPHYT_RS16555 -3.4 -3.2 cation transporter compare
BPHYT_RS12530 -3.3 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17520 -3.3 -2.3 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS03645 -3.1 -1.7 tRNA dimethylallyltransferase compare
BPHYT_RS10345 -3.0 -0.8 flagellar motor protein MotB compare
BPHYT_RS09500 -3.0 -6.3 glucose-6-phosphate isomerase compare
BPHYT_RS17885 -3.0 -3.7 3-dehydroquinate synthase compare
BPHYT_RS13605 -3.0 -1.2 tRNA-Pro compare
BPHYT_RS12990 -3.0 -2.0 iron transporter compare
BPHYT_RS14845 -2.9 -2.3 cysteine synthase compare
BPHYT_RS16245 -2.8 -1.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17700 -2.8 -3.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS12550 -2.8 -1.1 GTP-binding protein HflX compare
BPHYT_RS33920 -2.7 -4.1 type II citrate synthase compare
BPHYT_RS33580 -2.7 -3.2 geranyltranstransferase compare
BPHYT_RS21905 -2.7 -1.1 IclR family transcriptional regulator compare
BPHYT_RS17855 -2.7 -13.6 glutamate synthase compare
BPHYT_RS17390 -2.7 -16.6 anthranilate synthase subunit I compare
BPHYT_RS17670 -2.6 -4.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS26465 -2.6 -1.3 metallophosphoesterase compare
BPHYT_RS03900 -2.6 -1.0 phospholipid-binding protein compare
BPHYT_RS08960 -2.6 -1.2 threonine synthase compare
BPHYT_RS02690 -2.6 -8.9 protoheme IX farnesyltransferase compare
BPHYT_RS14895 -2.6 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS16735 -2.6 -4.9 phosphogluconate dehydratase compare
BPHYT_RS06610 -2.6 -1.0 triosephosphate isomerase compare
BPHYT_RS05010 -2.4 -2.9 RpiR family transcriptional regulator compare
BPHYT_RS19115 -2.4 -3.1 acyl carrier protein compare
BPHYT_RS17760 -2.4 -5.1 ABC transporter permease compare
BPHYT_RS16905 -2.3 -3.1 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33835 -2.3 -6.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS28705 -2.3 -0.9 IclR family transcriptional regulator compare
BPHYT_RS03280 -2.2 -1.2 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS16135 -2.1 -5.1 ABC transporter ATP-binding protein compare
BPHYT_RS13645 -2.1 -12.7 threonine--tRNA ligase compare
BPHYT_RS14245 -2.0 -1.0 membrane protein compare
BPHYT_RS09315 -2.0 -0.5 chemotaxis protein CheY compare
BPHYT_RS33900 -2.0 -7.7 3-isopropylmalate dehydrogenase compare
BPHYT_RS01595 -2.0 -9.4 homoserine O-acetyltransferase compare
BPHYT_RS36275 -2.0 -1.2 hypothetical protein compare
BPHYT_RS02755 -1.9 -1.1 cyd operon protein YbgT compare
BPHYT_RS06405 -1.9 -3.4 phosphoribosylamine--glycine ligase compare
BPHYT_RS27570 -1.9 -2.4 universal stress protein UspA compare
BPHYT_RS17100 -1.9 -4.9 RNA pyrophosphohydrolase compare
BPHYT_RS09145 -1.9 -8.5 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS17745 -1.9 -5.5 toluene tolerance family protein compare
BPHYT_RS20280 -1.9 -2.2 hypothetical protein compare
BPHYT_RS06550 -1.9 -1.8 acetolactate synthase compare
BPHYT_RS26685 -1.9 -1.0 precorrin-8X methylmutase compare
BPHYT_RS12725 -1.9 -9.7 regulator compare
BPHYT_RS17530 -1.9 -4.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS12465 -1.8 -0.9 inositol monophosphatase compare
BPHYT_RS15075 -1.8 -1.1 dihydrokaempferol 4-reductase compare
BPHYT_RS26975 -1.8 -1.7 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS08245 -1.8 -4.9 anti-sigma factor compare
BPHYT_RS33915 -1.8 -4.9 isopropylmalate isomerase compare
BPHYT_RS16840 -1.8 -1.2 transketolase compare
BPHYT_RS06375 -1.8 -3.0 ribonuclease compare
BPHYT_RS02570 -1.8 -4.9 phosphocarrier protein HPr compare
BPHYT_RS18760 -1.8 -1.5 flagellar biosynthesis protein FliT compare
BPHYT_RS12985 -1.7 -0.9 amino acid acetyltransferase compare
BPHYT_RS10100 -1.7 -2.8 dihydroxy-acid dehydratase compare
BPHYT_RS21330 -1.7 -1.6 hypothetical protein compare
BPHYT_RS03170 -1.7 -2.1 membrane protein compare
BPHYT_RS34780 -1.7 -3.3 phytoene synthase compare
BPHYT_RS22885 -1.7 -3.0 hypothetical protein compare
BPHYT_RS25875 -1.7 -0.9 type III secretion protein compare
BPHYT_RS02930 -1.7 -1.4 KpsF/GutQ family protein compare
BPHYT_RS14190 -1.7 -2.7 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17755 -1.7 -5.6 ABC transporter substrate-binding protein compare
BPHYT_RS17945 -1.7 -1.6 cytochrome C biogenesis protein compare
BPHYT_RS19435 -1.7 -2.4 16S rRNA methyltransferase compare
BPHYT_RS15710 -1.7 -0.8 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS04455 -1.7 -1.1 glycosyl transferase compare
BPHYT_RS24405 -1.7 -4.3 type VI secretion system effector compare
BPHYT_RS12055 -1.6 -9.6 phosphoenolpyruvate synthase compare
BPHYT_RS09765 -1.6 -1.4 G-D-S-L family lipolytic protein compare
BPHYT_RS15415 -1.6 -7.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02955 -1.6 -6.7 formyltetrahydrofolate deformylase compare
BPHYT_RS08945 -1.6 -9.0 hypothetical protein compare
BPHYT_RS03655 -1.6 -0.8 membrane protein compare
BPHYT_RS12280 -1.6 -1.1 RNA helicase compare
BPHYT_RS16340 -1.6 -3.3 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS26510 -1.6 -1.4 transcriptional regulator compare
BPHYT_RS13080 -1.6 -1.2 hypothetical protein compare
BPHYT_RS06045 -1.6 -5.6 transaldolase compare
BPHYT_RS02640 -1.6 -8.1 cytochrome C oxidase compare
BPHYT_RS16085 -1.6 -3.1 DeoR faimly transcriptional regulator compare
BPHYT_RS31510 -1.6 -2.2 sulfonate ABC transporter substrate-binding protein compare
BPHYT_RS05225 -1.6 -5.6 phosphoenolpyruvate carboxylase compare
BPHYT_RS01585 -1.6 -4.3 major facilitator superfamily protein compare
BPHYT_RS06685 -1.6 -1.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS32860 -1.6 -0.7 hypothetical protein compare
BPHYT_RS22835 -1.5 -0.8 flagellar motor protein MotA compare
BPHYT_RS20065 -1.5 -2.1 hypothetical protein compare
BPHYT_RS12380 -1.5 -3.1 ABC transporter permease compare
BPHYT_RS30105 -1.5 -4.3 RND transporter compare
BPHYT_RS34655 -1.5 -1.3 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS16065 -1.5 -0.8 LacI family transcriptional regulator compare
BPHYT_RS05285 -1.5 -1.1 hypothetical protein compare
BPHYT_RS14400 -1.5 -1.9 anti-sigma factor compare
BPHYT_RS35885 -1.5 -2.1 hypothetical protein compare
BPHYT_RS17640 -1.5 -1.0 2-alkenal reductase compare
BPHYT_RS31910 -1.5 -0.8 hypothetical protein compare
BPHYT_RS10995 -1.5 -1.3 GntR family transcriptional regulator compare
BPHYT_RS10670 -1.5 -1.1 catechol 1,2-dioxygenase compare
BPHYT_RS03375 -1.5 -1.2 NAD(P) transhydrogenase compare
BPHYT_RS16130 -1.5 -4.2 cation ABC transporter substrate-binding protein compare
BPHYT_RS30465 -1.5 -0.9 short-chain dehydrogenase compare
BPHYT_RS10245 -1.5 -2.0 import inner membrane translocase subunit Tim44 compare
BPHYT_RS31515 -1.4 -1.3 agmatinase compare
BPHYT_RS03255 -1.4 -1.9 glutathione S-transferase compare
BPHYT_RS15865 -1.4 -2.8 exodeoxyribonuclease VII large subunit compare
BPHYT_RS13325 -1.4 -1.8 TetR family transcriptional regulator compare
BPHYT_RS12900 -1.4 -1.5 transposase compare
BPHYT_RS14910 -1.4 -6.6 chorismate mutase compare
BPHYT_RS16710 -1.4 -0.4 LysR family transcriptional regulator compare
BPHYT_RS17765 -1.4 -3.7 toluene ABC transporter ATP-binding protein compare
BPHYT_RS22910 -1.4 -0.6 hypothetical protein compare
BPHYT_RS32630 -1.4 -2.6 tat pathway signal sequence compare
BPHYT_RS25135 -1.4 -1.2 hypothetical protein compare
BPHYT_RS06175 -1.4 -3.3 LPS biosynthesis compare
BPHYT_RS06535 -1.4 -2.9 membrane protein compare
BPHYT_RS28065 -1.4 -0.8 hypothetical protein compare
BPHYT_RS15950 -1.4 -3.1 tyrosine recombinase XerD compare
BPHYT_RS09160 -1.4 -3.1 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS17075 -1.4 -2.7 ABC transporter permease compare
BPHYT_RS34810 -1.4 -4.0 RND transporter compare
BPHYT_RS08525 -1.4 -0.8 SAM-dependent methyltransferase compare
BPHYT_RS26490 -1.4 -0.8 hypothetical protein compare
BPHYT_RS14855 -1.4 -0.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS25980 -1.3 -0.7 urea carboxylase compare
BPHYT_RS03570 -1.3 -4.8 heat-inducible transcription repressor HrcA compare
BPHYT_RS30100 -1.3 -1.6 copper oxidase compare
BPHYT_RS03495 -1.3 -3.8 hypothetical protein compare
BPHYT_RS33585 -1.3 -1.4 exodeoxyribonuclease VII small subunit compare
BPHYT_RS06400 -1.3 -3.2 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS09000 -1.3 -0.8 competence protein ComE compare
BPHYT_RS02860 -1.3 -0.5 membrane protein compare
BPHYT_RS11400 -1.3 -1.4 hypothetical protein compare
BPHYT_RS27065 -1.3 -1.1 hypothetical protein compare
BPHYT_RS02665 -1.3 -6.4 MFS transporter compare
BPHYT_RS34080 -1.3 -2.0 flagellar motor protein MotB compare
BPHYT_RS03535 -1.3 -3.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS10135 -1.3 -0.7 hypothetical protein compare
BPHYT_RS03725 -1.3 -0.6 serine hydroxymethyltransferase compare
BPHYT_RS21495 -1.3 -0.8 ABC transporter compare
BPHYT_RS11285 -1.3 -1.8 LacI family transcription regulator compare
BPHYT_RS09445 -1.3 -2.6 trigger factor compare
BPHYT_RS20750 -1.3 -1.3 LacI family transcriptional regulator compare
BPHYT_RS27370 -1.3 -1.8 CoA transferase compare
BPHYT_RS16250 -1.3 -0.8 N5-carboxyaminoimidazole ribonucleotide mutase compare
BPHYT_RS30450 -1.3 -0.8 ABC transporter permease compare
BPHYT_RS05565 -1.3 -1.7 membrane protein compare
BPHYT_RS28485 -1.3 -0.8 GntR family transcriptional regulator compare
BPHYT_RS19260 -1.3 -0.7 hypothetical protein compare
BPHYT_RS33655 -1.3 -2.7 MarR family transcriptional regulator compare
BPHYT_RS11960 -1.3 -0.9 MarR family transcriptional regulator compare
BPHYT_RS04220 -1.3 -3.0 hypothetical protein compare
BPHYT_RS31305 -1.3 -1.4 alcohol dehydrogenase compare
BPHYT_RS16990 -1.3 -3.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS14485 -1.3 -2.3 ribonuclease E compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days across organisms