Experiment set36S437 for Burkholderia phytofirmans PsJN

Compare to:

Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

200 most important genes:

  gene name fitness t score description  
BPHYT_RS35885 -6.8 -3.3 hypothetical protein compare
BPHYT_RS17680 -6.1 -3.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17685 -6.0 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17690 -5.8 -5.6 imidazole glycerol phosphate synthase compare
BPHYT_RS17670 -5.7 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS16085 -5.6 -3.2 DeoR faimly transcriptional regulator compare
BPHYT_RS17675 -5.2 -1.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS03150 -5.2 -9.9 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17380 -5.1 -9.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS06065 -5.1 -9.0 cytochrome C compare
BPHYT_RS02685 -5.0 -10.2 cytochrome C oxidase subunit I compare
BPHYT_RS02665 -4.9 -9.5 MFS transporter compare
BPHYT_RS16270 -4.9 -2.8 phosphoglycerate kinase compare
BPHYT_RS02570 -4.9 -6.8 phosphocarrier protein HPr compare
BPHYT_RS12990 -4.9 -2.0 iron transporter compare
BPHYT_RS02590 -4.8 -4.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS22730 -4.5 -1.8 serine/threonine kinase compare
BPHYT_RS22865 -4.5 -2.1 ATPase compare
BPHYT_RS02690 -4.4 -11.0 protoheme IX farnesyltransferase compare
BPHYT_RS06555 -4.4 -5.2 ketol-acid reductoisomerase compare
BPHYT_RS33535 -4.4 -20.0 RNA polymerase sigma factor RpoD compare
BPHYT_RS13595 -4.3 -7.8 IclR family transcriptional regulator compare
BPHYT_RS12530 -4.3 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS12845 -4.3 -9.6 ATPase compare
BPHYT_RS21705 -4.3 -4.2 sulfoacetaldehyde acetyltransferase compare
BPHYT_RS16835 -4.3 -4.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS13220 -4.2 -4.9 phosphomethylpyrimidine synthase compare
BPHYT_RS33655 -4.2 -3.7 MarR family transcriptional regulator compare
BPHYT_RS17715 -4.2 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17945 -4.1 -2.6 cytochrome C biogenesis protein compare
BPHYT_RS11040 -4.0 -1.1 GntR family transcriptional regulator compare
BPHYT_RS08955 -4.0 -2.8 homoserine dehydrogenase compare
BPHYT_RS04965 -4.0 -6.6 ATP-binding protein compare
BPHYT_RS06545 -4.0 -7.2 acetolactate synthase compare
BPHYT_RS14915 -4.0 -5.2 phosphoserine aminotransferase compare
BPHYT_RS06070 -4.0 -8.9 cytochrome C compare
BPHYT_RS12615 -3.9 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS03175 -3.9 -5.1 sterol-binding protein compare
BPHYT_RS17075 -3.9 -3.3 ABC transporter permease compare
BPHYT_RS14755 -3.8 -2.1 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS02540 -3.8 -1.1 hypothetical protein compare
BPHYT_RS11325 -3.8 -6.8 voltage-gated chloride channel protein ClcB compare
BPHYT_RS08975 -3.8 -2.6 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS16320 -3.8 -4.1 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS33540 -3.7 -3.3 hypothetical protein compare
BPHYT_RS15920 -3.6 -9.9 argininosuccinate synthase compare
BPHYT_RS02640 -3.6 -10.8 cytochrome C oxidase compare
BPHYT_RS33875 -3.6 -7.1 tryptophan synthase subunit alpha compare
BPHYT_RS08665 -3.6 -1.0 hypothetical protein compare
BPHYT_RS02885 -3.6 -7.6 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS14185 -3.6 -1.4 transcription elongation factor GreA compare
BPHYT_RS02610 -3.5 -3.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS14320 -3.5 -12.0 UvrABC system protein C compare
BPHYT_RS14715 -3.5 -6.4 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS13350 -3.4 -4.4 shikimate kinase compare
BPHYT_RS31050 -3.4 -1.0 epimerase compare
BPHYT_RS02560 -3.4 -4.0 glutathione synthetase compare
BPHYT_RS17920 -3.3 -0.9 protein CyaY compare
BPHYT_RS33865 -3.3 -5.9 tryptophan synthase alpha chain compare
BPHYT_RS06535 -3.2 -2.8 membrane protein compare
BPHYT_RS33645 -3.2 -2.2 homoserine kinase compare
BPHYT_RS08245 -3.2 -4.4 anti-sigma factor compare
BPHYT_RS11555 -3.2 -2.4 allantoinase compare
BPHYT_RS19680 -3.2 -12.2 glutamate--cysteine ligase compare
BPHYT_RS06900 -3.1 -2.2 aspartate aminotransferase compare
BPHYT_RS13605 -3.0 -0.8 tRNA-Pro compare
BPHYT_RS16245 -3.0 -2.0 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS05490 -3.0 -5.0 porin compare
BPHYT_RS15915 -2.9 -8.4 ornithine carbamoyltransferase compare
BPHYT_RS28870 -2.9 -2.2 MarR family transcriptional regulator compare
BPHYT_RS02860 -2.9 -0.8 membrane protein compare
BPHYT_RS14495 -2.9 -9.3 molybdopterin-guanine dinucleotide biosynthesis protein A compare
BPHYT_RS28705 -2.9 -0.8 IclR family transcriptional regulator compare
BPHYT_RS28370 -2.8 -1.1 peroxidase compare
BPHYT_RS17855 -2.8 -14.0 glutamate synthase compare
BPHYT_RS01830 -2.8 -10.5 LacI family transcriptional regulator compare
BPHYT_RS26535 -2.8 -4.5 GntR family transcriptional regulator compare
BPHYT_RS33765 -2.8 -1.1 membrane protein compare
BPHYT_RS02900 -2.7 -3.9 ribosome hibernation promoting factor compare
BPHYT_RS06400 -2.7 -4.3 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS17395 -2.7 -3.0 anthranilate synthase subunit II compare
BPHYT_RS18505 -2.7 -12.1 amino acid dehydrogenase compare
BPHYT_RS36060 -2.7 -3.8 hypothetical protein compare
BPHYT_RS16945 -2.7 -4.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS10095 -2.7 -1.4 integrase compare
BPHYT_RS14490 -2.7 -6.8 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS28535 -2.7 -1.3 response regulator receiver compare
BPHYT_RS33880 -2.7 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS33840 -2.6 -3.1 amidophosphoribosyltransferase compare
BPHYT_RS06905 -2.6 -6.7 excinuclease ABC subunit B compare
BPHYT_RS17760 -2.6 -6.0 ABC transporter permease compare
BPHYT_RS05040 -2.6 -5.9 sugar ABC transporter ATPase compare
BPHYT_RS28545 -2.6 -2.3 acetamidase compare
BPHYT_RS06530 -2.5 -1.0 membrane protein compare
BPHYT_RS19260 -2.5 -1.0 hypothetical protein compare
BPHYT_RS18605 -2.5 -8.6 NAD-dependent dehydratase compare
BPHYT_RS17240 -2.5 -0.7 cell division protein FtsW compare
BPHYT_RS16075 -2.5 -11.1 D-arabinitol 4-dehydrogenase compare
BPHYT_RS33920 -2.5 -1.7 type II citrate synthase compare
BPHYT_RS28000 -2.4 -1.3 permease compare
BPHYT_RS07515 -2.4 -2.9 photosystem reaction center subunit H compare
BPHYT_RS14865 -2.4 -1.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS09115 -2.4 -4.4 RNA polymerase sigma factor RpoS compare
BPHYT_RS26955 -2.4 -0.9 succinylglutamate desuccinylase compare
BPHYT_RS23920 -2.4 -2.6 malonate decarboxylase subunit beta compare
BPHYT_RS31255 -2.4 -1.8 cytochrome B561 compare
BPHYT_RS02575 -2.3 -12.1 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS31300 -2.3 -3.9 Crp/Fnr family transcriptional regulator compare
BPHYT_RS17400 -2.3 -4.9 anthranilate phosphoribosyltransferase compare
BPHYT_RS32360 -2.3 -1.4 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS23935 -2.3 -5.3 malonate decarboxylase subunit alpha compare
BPHYT_RS12235 -2.3 -4.5 DNA repair protein RadA compare
BPHYT_RS18270 -2.3 -6.3 phenylacetic acid degradation protein compare
BPHYT_RS06405 -2.3 -4.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS09315 -2.2 -0.6 chemotaxis protein CheY compare
BPHYT_RS03400 -2.2 -0.9 ATP-dependent DNA helicase RecG compare
BPHYT_RS05010 -2.2 -4.1 RpiR family transcriptional regulator compare
BPHYT_RS08335 -2.2 -1.2 hypothetical protein compare
BPHYT_RS13705 -2.2 -3.3 chorismate synthase compare
BPHYT_RS17885 -2.2 -3.3 3-dehydroquinate synthase compare
BPHYT_RS21675 -2.2 -2.3 FAD-dependent oxidoreductase compare
BPHYT_RS09545 -2.2 -2.2 peptide methionine sulfoxide reductase compare
BPHYT_RS27845 -2.2 -2.9 beta-lactamase compare
BPHYT_RS22360 -2.2 -1.9 response regulator receiver compare
BPHYT_RS25780 -2.2 -0.6 DeoR faimly transcriptional regulator compare
BPHYT_RS09375 -2.2 -6.3 (2Fe-2S)-binding protein compare
BPHYT_RS09160 -2.2 -3.7 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS29540 -2.2 -1.2 aldolase compare
BPHYT_RS17745 -2.2 -5.2 toluene tolerance family protein compare
BPHYT_RS18260 -2.2 -7.7 phenylacetic acid degradation protein compare
BPHYT_RS03495 -2.1 -4.6 hypothetical protein compare
BPHYT_RS10100 -2.1 -3.9 dihydroxy-acid dehydratase compare
BPHYT_RS18320 -2.1 -1.5 orotate phosphoribosyltransferase compare
BPHYT_RS16710 -2.1 -0.6 LysR family transcriptional regulator compare
BPHYT_RS02755 -2.1 -0.8 cyd operon protein YbgT compare
BPHYT_RS22910 -2.1 -0.8 hypothetical protein compare
BPHYT_RS33610 -2.1 -0.8 DNA polymerase I compare
BPHYT_RS17890 -2.1 -1.0 shikimate kinase compare
BPHYT_RS02285 -2.1 -5.4 cell division protein compare
BPHYT_RS23380 -2.1 -5.7 hypothetical protein compare
BPHYT_RS25770 -2.1 -0.8 hypothetical protein compare
BPHYT_RS34655 -2.1 -2.4 2-amino-3-ketobutyrate CoA ligase compare
BPHYT_RS15890 -2.1 -1.0 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS31910 -2.1 -0.8 hypothetical protein compare
BPHYT_RS12815 -2.1 -4.5 IclR family transcriptional regulator compare
BPHYT_RS12150 -2.1 -9.3 PII uridylyl-transferase compare
BPHYT_RS22580 -2.0 -1.7 transcriptional regulator compare
BPHYT_RS15750 -2.0 -6.9 elongation factor G compare
BPHYT_RS17700 -2.0 -1.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04720 -2.0 -5.8 transcriptional regulator compare
BPHYT_RS13645 -2.0 -12.2 threonine--tRNA ligase compare
BPHYT_RS18655 -2.0 -2.4 3-oxoacyl-ACP synthase compare
BPHYT_RS18620 -2.0 -4.1 transcriptional regulator compare
BPHYT_RS32880 -2.0 -0.8 alanine acetyltransferase compare
BPHYT_RS24500 -2.0 -0.7 histidine kinase compare
BPHYT_RS18280 -2.0 -5.4 TetR family transcriptional regulator compare
BPHYT_RS36055 -2.0 -2.1 hypothetical protein compare
BPHYT_RS16290 -2.0 -0.9 hypothetical protein compare
BPHYT_RS01630 -2.0 -1.8 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS29910 -2.0 -4.2 formyl-CoA transferase compare
BPHYT_RS03410 -2.0 -1.3 queuine tRNA-ribosyltransferase compare
BPHYT_RS01585 -2.0 -4.8 major facilitator superfamily protein compare
BPHYT_RS14140 -2.0 -3.9 phosphate transporter permease subunit PstC compare
BPHYT_RS00310 -1.9 -6.8 hypothetical protein compare
BPHYT_RS12785 -1.9 -1.9 Rrf2 family transcriptional regulator compare
BPHYT_RS08235 -1.9 -0.5 nucleoprotein, Hfg, host factor I compare
BPHYT_RS13890 -1.9 -1.8 RpiR family transcriptional regulator compare
BPHYT_RS28300 -1.9 -1.2 histone nucleoid-structuring protein H-NS compare
BPHYT_RS03470 -1.9 -3.0 LysR family transcriptional regulator compare
BPHYT_RS19620 -1.9 -3.1 general secretion pathway protein GspH compare
BPHYT_RS05125 -1.9 -5.0 cyclopropane-fatty-acyl-phospholipid synthase compare
BPHYT_RS23905 -1.8 -3.6 malonate decarboxylase subunit epsilon compare
BPHYT_RS33915 -1.8 -4.8 isopropylmalate isomerase compare
BPHYT_RS14400 -1.8 -2.2 anti-sigma factor compare
BPHYT_RS04725 -1.8 -6.0 sulfite reductase compare
BPHYT_RS22835 -1.8 -0.7 flagellar motor protein MotA compare
BPHYT_RS17625 -1.8 -10.9 cytochrome B compare
BPHYT_RS19640 -1.8 -7.3 general secretion pathway protein L compare
BPHYT_RS27635 -1.8 -5.0 alcohol dehydrogenase compare
BPHYT_RS28030 -1.8 -2.3 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS35385 -1.8 -3.5 GntR family transcriptional regulator compare
BPHYT_RS04955 -1.8 -1.2 methionyl-tRNA synthetase compare
BPHYT_RS03730 -1.8 -1.3 transcriptional repressor NrdR compare
BPHYT_RS30295 -1.8 -1.8 acyl-CoA dehydrogenase compare
BPHYT_RS25500 -1.8 -0.8 hypothetical protein compare
BPHYT_RS17860 -1.8 -3.7 transposase compare
BPHYT_RS14895 -1.8 -1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS29810 -1.8 -1.0 hexapeptide transferase compare
BPHYT_RS00965 -1.8 -3.1 ArsR family transcriptional regulator compare
BPHYT_RS14450 -1.8 -3.1 hypothetical protein compare
BPHYT_RS06610 -1.7 -0.7 triosephosphate isomerase compare
BPHYT_RS02635 -1.7 -4.6 membrane protein compare
BPHYT_RS23230 -1.7 -0.7 histidine kinase compare
BPHYT_RS19605 -1.7 -9.2 general secretion pathway protein F compare
BPHYT_RS28485 -1.7 -0.8 GntR family transcriptional regulator compare
BPHYT_RS28350 -1.7 -1.8 fatty acid desaturase compare
BPHYT_RS05120 -1.7 -4.1 hypothetical protein compare
BPHYT_RS31715 -1.7 -3.5 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS24665 -1.7 -1.3 ABC transporter permease compare
BPHYT_RS22145 -1.7 -0.6 phosphoesterase compare


Specific Phenotypes

For 33 genes in this experiment

For in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 in Burkholderia phytofirmans PsJN

For in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 across organisms