Experiment set36S437 for Burkholderia phytofirmans PsJN

Compare to:

Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS27865 +8.8 3.4 ATPase compare
BPHYT_RS05610 +4.9 9.4 DNA-cytosine methyltransferase compare
BPHYT_RS16950 +4.9 4.3 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) compare
BPHYT_RS34250 +4.9 7.7 ABC transporter for L-rhamnose/L-fucose/xylitol, substrate-binding component (from data) compare
BPHYT_RS20805 +4.6 2.0 LacI family transcriptional regulator compare
BPHYT_RS08030 +4.3 9.0 transposase compare
BPHYT_RS20790 +3.9 4.7 TetR family transcriptional regulator compare
BPHYT_RS34225 +3.6 3.5 L-fucose dehydrogenase (EC 1.1.1.122) (from data) compare
BPHYT_RS13610 +3.6 3.2 MerR family transcriptional regulator compare
BPHYT_RS27175 +3.4 2.4 DNA-binding protein compare
BPHYT_RS16470 +3.2 10.1 DeoR faimly transcriptional regulator compare
BPHYT_RS34245 +3.1 9.6 ABC transporter for L-rhamnose/L-fucose/xylitol, ATPase component (from data) compare
BPHYT_RS36340 +2.8 3.1 hypothetical protein compare
BPHYT_RS16020 +2.7 4.9 AsnC family transcriptional regulator compare
BPHYT_RS00980 +2.7 1.4 GCN5 family acetyltransferase compare
BPHYT_RS34035 +2.7 2.5 type II and III secretion system outermembrane protein, secretin compare
BPHYT_RS06795 +2.5 12.2 membrane protein compare
BPHYT_RS24590 +2.5 2.1 DeoR faimly transcriptional regulator compare
BPHYT_RS21460 +2.2 1.8 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS03330 +2.2 4.8 hypothetical protein compare
BPHYT_RS18710 +2.2 2.7 membrane protein compare
BPHYT_RS11955 +2.2 1.2 hemolysin D compare
BPHYT_RS26925 +2.2 2.1 NIPSNAP family containing protein compare
BPHYT_RS31515 +2.1 3.6 agmatinase compare
BPHYT_RS12475 +2.0 4.4 DNA mismatch repair protein MutS compare
BPHYT_RS29110 +1.8 2.7 DNA-directed DNA polymerase compare
BPHYT_RS08130 +1.8 1.5 transposase compare
BPHYT_RS03650 +1.8 3.0 DNA mismatch repair protein compare
BPHYT_RS28280 +1.8 2.2 hypothetical protein compare
BPHYT_RS05880 +1.7 2.3 hypothetical protein compare
BPHYT_RS01095 +1.7 1.7 hypothetical protein compare
BPHYT_RS34220 +1.7 1.8 L-fucono-1,5-lactonase (from data) compare
BPHYT_RS30795 +1.7 1.6 short-chain dehydrogenase compare
BPHYT_RS33160 +1.7 2.3 hypothetical protein compare
BPHYT_RS25560 +1.7 2.3 RNA polymerase sigma factor compare
BPHYT_RS28625 +1.7 2.1 major facilitator transporter compare
BPHYT_RS34085 +1.6 1.8 polyamine ABC transporter permease compare
BPHYT_RS28065 +1.6 1.3 hypothetical protein compare
BPHYT_RS23370 +1.6 2.2 glycosyl transferase family 1 compare
BPHYT_RS18525 +1.6 2.7 hypothetical protein compare
BPHYT_RS27875 +1.6 3.3 CreA family protein compare
BPHYT_RS30465 +1.6 1.1 short-chain dehydrogenase compare
BPHYT_RS32520 +1.5 5.1 GntR family transcriptional regulator compare
BPHYT_RS02965 +1.5 2.5 membrane protein compare
BPHYT_RS04455 +1.5 0.7 glycosyl transferase compare
BPHYT_RS12325 +1.5 3.0 GNAT family acetyltransferase compare
BPHYT_RS22230 +1.5 4.3 LuxR family transcriptional regulator compare
BPHYT_RS31110 +1.5 3.3 hypothetical protein compare
BPHYT_RS15145 +1.5 2.1 3-oxoacyl-ACP synthase compare
BPHYT_RS20115 +1.5 1.6 transcriptional regulator compare
BPHYT_RS02595 +1.5 1.3 sulfurtransferase compare
BPHYT_RS34100 +1.4 2.3 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS15800 +1.4 3.2 GntR family transcriptional regulator compare
BPHYT_RS04290 +1.4 1.2 glycosyl transferase family 2 compare
BPHYT_RS25970 +1.4 1.2 urea amidolyase compare
BPHYT_RS11705 +1.4 1.7 hypothetical protein compare
BPHYT_RS34090 +1.4 3.6 polyamine ABC transporter substrate-binding protein compare
BPHYT_RS20505 +1.4 1.4 carboxymethylenebutenolidase compare
BPHYT_RS29235 +1.4 2.2 cell shape determination protein CcmA compare
BPHYT_RS15260 +1.4 2.0 chorismate mutase compare
BPHYT_RS36305 +1.4 1.5 hypothetical protein compare
BPHYT_RS10465 +1.4 3.4 hypothetical protein compare
BPHYT_RS24410 +1.4 3.4 type VI secretion protein compare
BPHYT_RS10475 +1.4 1.7 mammalian cell entry protein compare
BPHYT_RS11960 +1.4 1.1 MarR family transcriptional regulator compare
BPHYT_RS00705 +1.4 1.9 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS02770 +1.4 2.0 membrane protein compare
BPHYT_RS08150 +1.4 1.0 membrane protein compare
BPHYT_RS35845 +1.4 2.4 hypothetical protein compare
BPHYT_RS15420 +1.4 1.6 lysine transporter LysE compare
BPHYT_RS01625 +1.4 1.0 chemotaxis protein CheY compare
BPHYT_RS24955 +1.4 1.7 cytochrome C peroxidase compare
BPHYT_RS18540 +1.3 3.5 hypothetical protein compare
BPHYT_RS32200 +1.3 1.1 lytic transglycosylase compare
BPHYT_RS03775 +1.3 0.8 peroxidase compare
BPHYT_RS26130 +1.3 3.1 ABC transporter permease compare
BPHYT_RS30340 +1.3 1.5 AraC family transcriptional regulator compare
BPHYT_RS09650 +1.3 1.3 hypothetical protein compare
BPHYT_RS01790 +1.3 8.5 LuxR family transcriptional regulator compare
BPHYT_RS26390 +1.3 0.9 antibiotic resistance protein compare
BPHYT_RS24840 +1.3 2.0 cobalamin biosynthesis protein CobW compare
BPHYT_RS26885 +1.3 3.2 DSBA oxidoreductase compare
BPHYT_RS06195 +1.3 1.8 membrane protein compare
BPHYT_RS26920 +1.3 2.7 major facilitator transporter compare
BPHYT_RS22485 +1.3 2.7 NADP-dependent aryl-alcohol dehydrogenase compare
BPHYT_RS05020 +1.3 2.0 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS01170 +1.3 1.8 hypothetical protein compare
BPHYT_RS04005 +1.3 1.6 GDP-L-fucose synthase compare
BPHYT_RS34240 +1.2 4.0 ABC transporter for L-rhamnose/L-fucose/xylitol, permease component (from data) compare
BPHYT_RS10350 +1.2 2.7 hypothetical protein compare
BPHYT_RS35310 +1.2 1.2 GCN5 family N-acetyltransferase compare
BPHYT_RS23605 +1.2 1.2 hypothetical protein compare
BPHYT_RS32600 +1.2 1.5 photosystem reaction center subunit H compare
BPHYT_RS03505 +1.2 2.5 FAD-binding protein compare
BPHYT_RS34745 +1.2 1.2 hypothetical protein compare
BPHYT_RS09280 +1.2 1.3 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS36310 +1.2 3.0 hypothetical protein compare
BPHYT_RS23525 +1.2 1.3 hypothetical protein compare
BPHYT_RS24540 +1.2 2.8 DMSO reductase compare
BPHYT_RS10500 +1.2 1.1 acetolactate synthase compare
BPHYT_RS34440 +1.2 1.0 serine--glyoxylate aminotransferase compare
BPHYT_RS20425 +1.2 2.0 hypothetical protein compare
BPHYT_RS18785 +1.2 1.5 flagellar assembly protein FliH compare
BPHYT_RS02180 +1.2 2.2 hypothetical protein compare
BPHYT_RS04135 +1.2 0.8 glycosyl transferase family 1 compare
BPHYT_RS00960 +1.2 1.7 recombinase RecA compare
BPHYT_RS23035 +1.2 1.9 hypothetical protein compare
BPHYT_RS34775 +1.1 2.5 diguanylate cyclase compare
BPHYT_RS07040 +1.1 2.3 asparaginase compare
BPHYT_RS14585 +1.1 1.5 hypothetical protein compare
BPHYT_RS35275 +1.1 1.0 acetyltransferase compare
BPHYT_RS32055 +1.1 1.5 hypothetical protein compare
BPHYT_RS31065 +1.1 2.4 polysaccharide biosynthesis protein compare
BPHYT_RS21495 +1.1 0.8 ABC transporter compare
BPHYT_RS21030 +1.1 3.3 ABC transporter ATP-binding protein compare
BPHYT_RS26930 +1.1 4.3 mechanosensitive ion channel protein compare
BPHYT_RS25110 +1.1 1.8 sarcosine oxidase subunit delta compare
BPHYT_RS26035 +1.1 2.1 ABC transporter ATP-binding protein compare
BPHYT_RS34095 +1.1 3.5 spermidine/putrescine ABC transporter substrate-binding protein compare
BPHYT_RS24730 +1.1 2.3 AraC family transcriptional regulator compare
BPHYT_RS02480 +1.1 1.3 alkaline phosphatase compare
BPHYT_RS18340 +1.1 0.9 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS20695 +1.1 1.6 ribokinase compare
BPHYT_RS09365 +1.1 2.0 cytochrome C2 compare
BPHYT_RS20165 +1.1 1.3 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS10995 +1.1 1.2 GntR family transcriptional regulator compare
BPHYT_RS34230 +1.1 3.9 L-fuconate dehydratase; L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS04890 +1.1 0.7 cobalamin biosynthesis protein CobD compare
BPHYT_RS34700 +1.1 2.6 arsenate reductase compare
BPHYT_RS27640 +1.1 2.7 acetoacetyl-CoA reductase compare
BPHYT_RS27940 +1.1 3.3 FAD-binding protein compare
BPHYT_RS22295 +1.1 0.8 LysR family transcriptional regulator compare
BPHYT_RS20955 +1.1 1.1 3-oxoacyl-ACP reductase compare
BPHYT_RS04080 +1.1 3.1 chloride channel protein compare
BPHYT_RS33740 +1.0 1.8 hypothetical protein compare
BPHYT_RS22695 +1.0 5.0 TetR family transcriptional regulator compare
BPHYT_RS24505 +1.0 3.0 glyoxalase compare
BPHYT_RS14660 +1.0 1.7 hypothetical protein compare
BPHYT_RS22820 +1.0 1.2 hydrolase compare
BPHYT_RS09585 +1.0 1.0 hypothetical protein compare
BPHYT_RS13080 +1.0 1.1 hypothetical protein compare
BPHYT_RS32250 +1.0 2.0 membrane protein compare
BPHYT_RS35085 +1.0 1.5 transcriptional regulator compare
BPHYT_RS31415 +1.0 1.2 amino acid ABC transporter permease compare
BPHYT_RS28215 +1.0 1.7 D-ribose transporter ATP binding protein compare
BPHYT_RS25575 +1.0 0.9 alpha/beta hydrolase compare
BPHYT_RS16675 +1.0 0.6 dihydroorotase compare
BPHYT_RS33015 +1.0 1.6 hypothetical protein compare
BPHYT_RS00855 +1.0 1.3 hypothetical protein compare
BPHYT_RS05300 +1.0 1.6 polyketide cyclase compare
BPHYT_RS14670 +1.0 1.0 hypothetical protein compare
BPHYT_RS19025 +1.0 4.1 transcriptional regulator compare
BPHYT_RS35865 +1.0 1.5 hypothetical protein compare
BPHYT_RS18535 +1.0 5.1 hypothetical protein compare
BPHYT_RS34470 +1.0 2.9 ABC transporter compare
BPHYT_RS27295 +1.0 0.9 hypothetical protein compare
BPHYT_RS10065 +1.0 0.9 cytochrome C oxidase subunit I compare
BPHYT_RS30085 +1.0 0.7 hypothetical protein compare
BPHYT_RS26740 +1.0 1.2 hypothetical protein compare
BPHYT_RS08615 +1.0 0.9 hypothetical protein compare
BPHYT_RS09465 +1.0 0.9 transcriptional regulator compare
BPHYT_RS07170 +1.0 3.4 ABC transporter compare
BPHYT_RS10740 +1.0 0.9 LuxR family transcriptional regulator compare
BPHYT_RS11915 +1.0 1.2 hypothetical protein compare
BPHYT_RS25060 +1.0 3.5 membrane protein compare
BPHYT_RS32605 +1.0 2.5 hypothetical protein compare
BPHYT_RS26480 +1.0 2.2 peptidase M1 compare
BPHYT_RS27655 +1.0 1.2 potassium transporter compare
BPHYT_RS22855 +1.0 2.1 aldehyde-activating protein compare
BPHYT_RS18745 +1.0 4.0 coniferyl aldehyde dehydrogenase compare
BPHYT_RS24960 +1.0 2.8 phospholipase C compare
BPHYT_RS10470 +1.0 1.7 hypothetical protein compare
BPHYT_RS33425 +1.0 1.9 transcriptional regulator compare
BPHYT_RS02975 +1.0 1.4 membrane protein compare
BPHYT_RS20570 +1.0 2.0 heptosyltransferase compare
BPHYT_RS28905 +1.0 1.0 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS09870 +1.0 2.3 membrane protein compare
BPHYT_RS21335 +1.0 1.5 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS28200 +1.0 1.6 sugar ABC transporter substrate-binding protein compare
BPHYT_RS05850 +1.0 2.4 hypothetical protein compare
BPHYT_RS26560 +1.0 1.1 murein hydrolase transporter LrgA compare
BPHYT_RS08405 +0.9 0.8 hypothetical protein compare
BPHYT_RS08365 +0.9 0.8 3-oxoacyl-ACP reductase compare
BPHYT_RS15490 +0.9 1.9 coproporphyrinogen III oxidase compare
BPHYT_RS17030 +0.9 0.7 lipid hydroperoxide peroxidase compare
BPHYT_RS15585 +0.9 1.9 acetyltransferase compare
BPHYT_RS27785 +0.9 1.1 hypothetical protein compare
BPHYT_RS32445 +0.9 2.0 sulfate ABC transporter substrate-binding protein compare
BPHYT_RS34150 +0.9 2.1 Asp/Glu/hydantoin racemase compare
BPHYT_RS20880 +0.9 0.6 polyketide cyclase compare
BPHYT_RS30655 +0.9 2.4 O-methyltransferase compare
BPHYT_RS06090 +0.9 2.0 TetR family transcriptional regulator compare
BPHYT_RS29520 +0.9 0.7 hypothetical protein compare
BPHYT_RS21240 +0.9 5.2 LuxR family transcriptional regulator compare
BPHYT_RS35840 +0.9 2.7 hypothetical protein compare
BPHYT_RS34105 +0.9 2.1 decarboxylase compare
BPHYT_RS35640 +0.9 3.4 hypothetical protein compare
BPHYT_RS17820 +0.9 2.6 hypothetical protein compare
BPHYT_RS28610 +0.9 2.7 beta-lactamase compare
BPHYT_RS18835 +0.9 1.2 flagellar biosynthesis protein FliR compare


Specific Phenotypes

For 33 genes in this experiment

For in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 in Burkholderia phytofirmans PsJN

For in planta Rhizosphere from sorghum RTx_430 plants, grown 2 months, low phosphate; Rep 1 across organisms