Experiment set36S415 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Stool_Day5_Mouse7

Group: mouse; methotrexate
Media: + Methotrexate (5 mg/kg)
Culturing: Btheta_ML6a
By: Nayak-UCSF-RBAD on 10/31/24

Specific Phenotypes

For 7 genes in this experiment

For mouse; methotrexate Methotrexate in Bacteroides thetaiotaomicron VPI-5482

For mouse; methotrexate Methotrexate across organisms

SEED Subsystems

Subsystem #Specific
Allantoin Utilization 1
Cysteine Biosynthesis 1
D-galactarate, D-glucarate and D-glycerate catabolism 1
DNA-replication 1
DNA repair, bacterial RecFOR pathway 1
Glycerolipid and Glycerophospholipid Metabolism in Bacteria 1
Glycine and Serine Utilization 1
L-rhamnose utilization 1
Multidrug Resistance Efflux Pumps 1
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 1
Photorespiration (oxidative C2 cycle) 1
Respiratory Complex I 1
Serine-glyoxylate cycle 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
NADH to cytochrome bd oxidase electron transfer I 2 1 1
NADH to cytochrome bo oxidase electron transfer I 2 1 1
2-O-α-mannosyl-D-glycerate degradation 2 1 1
aerobic respiration III (alternative oxidase pathway) 3 2 1
aerobic respiration I (cytochrome c) 4 2 1
D-glucarate degradation I 4 1 1
D-galactarate degradation I 4 1 1
glycolate and glyoxylate degradation I 4 1 1
superpathway of D-glucarate and D-galactarate degradation 5 1 1
NAD(P)/NADPH interconversion 6 2 1
Fe(II) oxidation 6 1 1
superpathway of glycol metabolism and degradation 7 2 1
2-deoxy-D-ribose degradation II 8 2 1
Entner-Doudoroff pathway II (non-phosphorylative) 9 5 1
photorespiration III 9 4 1
photorespiration I 9 4 1
photorespiration II 10 5 1
formaldehyde assimilation I (serine pathway) 13 7 1
superpathway of microbial D-galacturonate and D-glucuronate degradation 31 15 1