Experiment set34S75 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003

200 most important genes:

  gene name fitness t score description  
BT3320 -7.0 -4.5 dihydrodipicolinate reductase (NCBI ptt file) compare
BT1843 -6.5 -4.5 adenylosuccinate synthetase (NCBI ptt file) compare
BT1374 -5.9 -4.1 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT1757 -5.8 -8.9 fructokinase (NCBI ptt file) compare
BT3933 -5.4 -7.8 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT0892 -5.4 -2.1 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT1375 -5.1 -9.3 aspartokinase (NCBI ptt file) compare
BT3253 -5.1 -3.2 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT4610 -4.9 -2.7 RecA (NCBI ptt file) compare
BT0891 -4.7 -3.0 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT4644 -4.7 -4.5 putative anti-sigma factor (NCBI ptt file) compare
BT1758 -4.6 -5.1 fructose transporter (from data) compare
BT0547 -4.5 -4.3 aspartate aminotransferase (NCBI ptt file) compare
BT0548 -4.4 -3.0 diaminopimelate epimerase (NCBI ptt file) compare
BT3936 -4.4 -5.4 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT1733 -4.0 -3.9 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT4211 -4.0 -2.7 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT1747 -3.8 -2.6 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT0771 -3.6 -8.4 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT4658 -3.6 -6.5 glucuronyl hydrolase (NCBI ptt file) compare
BT0556 -3.5 -5.7 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) compare
BT3348 -3.4 -11.1 unsaturated glucuronide lyase acting on chondroitin/heparin disaccharides (EC 3.2.1.180) (from data) compare
BT4551 -3.4 -2.3 putative GTPase, ThdF family (NCBI ptt file) compare
BT3733 -3.4 -16.6 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT2843 -3.3 -4.1 integrase (NCBI ptt file) compare
BT2049 -3.2 -3.1 transcriptional regulator (NCBI ptt file) compare
BT4187 -3.1 -12.2 exo-alpha-D-galacturonosidase for catabolism of rhamnogalacturonan I and polygalacturonate (from data) compare
BT3260 -3.1 -3.6 DNA polymerase I (NCBI ptt file) compare
BT4174 -3.0 -7.0 conserved hypothetical protein (NCBI ptt file) compare
BT4649 -2.9 -1.9 hypothetical protein (NCBI ptt file) compare
BT0555 -2.9 -10.1 amidophosphoribosyltransferase (NCBI ptt file) compare
BT1353 -2.8 -3.3 glycosyltransferase (NCBI ptt file) compare
BT0617 -2.7 -1.6 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) compare
BT0350 -2.7 -7.6 ribulokinase (EC 2.7.1.16) (from data) compare
BT3981 -2.7 -2.7 hypothetical protein (NCBI ptt file) compare
BT2841 -2.7 -2.4 pyruvate kinase (NCBI ptt file) compare
BT1342 -2.7 -9.0 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT0616 -2.6 -2.8 conserved hypothetical protein (NCBI ptt file) compare
BT0557 -2.6 -10.1 carbamyl phosphate synthetase (NCBI ptt file) compare
BT0352 -2.6 -2.3 conserved hypothetical protein (NCBI ptt file) compare
BT2091 -2.6 -9.3 methylmalonyl-CoA mutase small subunit (NCBI ptt file) compare
BT0618 -2.6 -1.8 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC (NCBI ptt file) compare
BT0900 -2.5 -1.7 putative tetratricopeptide repeat family protein (NCBI ptt file) compare
BT1346 -2.5 -6.7 capsule biosynthesis protein capA (NCBI ptt file) compare
BT4305 -2.5 -12.6 putative alpha-amylase (NCBI ptt file) compare
BT1220 -2.5 -3.4 6-phosphogluconolactonase (NCBI ptt file) compare
BT4304 -2.4 -11.3 putative glycosyltransferase (NCBI ptt file) compare
BT0544 -2.4 -3.6 ammonium transporter (NCBI ptt file) compare
BT2415 -2.4 -10.4 aspartate aminotransferase (NCBI ptt file) compare
BT1754 -2.4 -11.0 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) compare
BT1363 -2.4 -1.5 DNA Pol III Epsilon Chain (NCBI ptt file) compare
p5482_02 -2.4 -5.5 hypothetical protein (NCBI) compare
BT2742 -2.4 -0.7 integrase, site-specific recombinase (NCBI ptt file) compare
BT0351 -2.4 -7.8 L-arabinose isomerase (NCBI ptt file) compare
BT0353 -2.3 -3.5 putative sugar epimerase/aldolase (NCBI ptt file) compare
BT0747 -2.3 -2.2 putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file) compare
BT2397 -2.3 -6.2 conserved hypothetical protein (NCBI ptt file) compare
BT3395 -2.3 -6.6 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT0156 -2.3 -1.5 transcriptional regulator (NCBI ptt file) compare
BT1350 -2.2 -6.4 CDP-glucose 4,6-dehydratase (NCBI ptt file) compare
BT3759 -2.2 -9.9 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT1222 -2.2 -2.9 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT0258 -2.2 -10.8 glucosamine-6-phosphate isomerase (NCBI ptt file) compare
BT0885 -2.2 -2.8 putative cation efflux pump (NCBI ptt file) compare
BT1304 -2.2 -1.3 putative transcriptional regulator (NCBI ptt file) compare
BT4103 -2.1 -4.5 putative Sec-independent protein translocase (NCBI ptt file) compare
BT4303 -2.1 -10.9 glycogen debranching enzyme-related protein (4-alpha-glucanotransferase) (NCBI ptt file) compare
BT3191 -2.1 -4.6 hypothetical protein (NCBI ptt file) compare
BT1759 -2.1 -5.3 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) compare
BT3760 -2.1 -5.6 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT2006 -2.1 -1.6 hypothetical protein (NCBI ptt file) compare
BT1326 -2.1 -1.9 TPR-domain containing protein (NCBI ptt file) compare
BT1844 -2.1 -3.1 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT3072 -2.1 -6.8 collagenase precursor (NCBI ptt file) compare
BT2938 -2.1 -4.6 putative glycosyltransferase (NCBI ptt file) compare
BT3549 -2.1 -6.9 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT3882 -2.1 -2.1 putative DNA binding protein (NCBI ptt file) compare
BT2090 -2.1 -8.6 methylmalonyl-CoA mutase large subunit (NCBI ptt file) compare
BT2153 -2.1 -1.6 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT0927 -2.0 -1.2 two-component system sensor histidine kinase (NCBI ptt file) compare
BT_2008 -2.0 -1.9 hypothetical protein (RefSeq) compare
BT0155 -2.0 -1.4 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) compare
BT3935 -2.0 -4.8 aminotransferase (NCBI ptt file) compare
BT0619 -1.9 -1.8 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) compare
BT1347 -1.9 -3.9 conserved hypothetical protein (NCBI ptt file) compare
BT2059 -1.9 -1.1 TonB (NCBI ptt file) compare
BT1355 -1.9 -4.2 hypothetical protein (NCBI ptt file) compare
BT3193 -1.8 -10.7 putative coenzyme A transferase (NCBI ptt file) compare
BT1526 -1.8 -4.3 myo-inositol-1-phosphate synthase (NCBI ptt file) compare
BT0621 -1.8 -2.1 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file) compare
BT0679 -1.8 -1.8 cation efflux system protein czcB (NCBI ptt file) compare
BT0370 -1.8 -6.5 galactokinase (NCBI ptt file) compare
BT1746 -1.8 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1339 -1.8 -5.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (NCBI ptt file) compare
BT3431 -1.8 -4.2 DNA repair protein (NCBI ptt file) compare
BT1348 -1.8 -4.6 CDP-abequose synthase (NCBI ptt file) compare
BT1068 -1.8 -2.4 hypothetical protein (NCBI ptt file) compare
BT3232 -1.8 -1.7 gluconate 5-dehydrogenase (NCBI ptt file) compare
BT3843 -1.7 -3.5 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) compare
BT1860 -1.7 -4.3 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT4330 -1.7 -7.7 xanthosine permease (NCBI ptt file) compare
BT1947 -1.7 -1.3 hypothetical protein (NCBI ptt file) compare
BT1356 -1.7 -4.9 putative capsule polysaccharide export protein (NCBI ptt file) compare
BT0527 -1.7 -5.7 tryptophan synthase alpha chain (NCBI ptt file) compare
BT1808 -1.7 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT3717 -1.7 -5.8 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT0173 -1.7 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0546 -1.7 -3.5 conserved hypothetical protein (NCBI ptt file) compare
BT0529 -1.7 -3.2 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT2684 -1.7 -1.7 hypothetical protein (NCBI ptt file) compare
BT4265 -1.7 -1.6 GMP synthase (glutamine-hydrolyzing) (NCBI ptt file) compare
BT1536 -1.7 -2.3 ABC transporter permease (NCBI ptt file) compare
BT1145 -1.7 -2.5 glucose-inhibited division protein (NCBI ptt file) compare
BT1912 -1.6 -1.7 hypothetical protein (NCBI ptt file) compare
BT1358 -1.6 -3.1 putative transcriptional regulator (NCBI ptt file) compare
BT2040 -1.6 -4.6 hypothetical protein (NCBI ptt file) compare
BT0578 -1.6 -6.9 excinuclease ABC subunit A (NCBI ptt file) compare
BT3980 -1.6 -1.8 hypothetical protein (NCBI ptt file) compare
BT4723 -1.6 -3.1 putative anti-sigma factor (NCBI ptt file) compare
BT2046 -1.6 -1.1 putative cardiolipin synthetase (NCBI ptt file) compare
BT1476 -1.6 -3.7 aspartate aminotransferase (NCBI ptt file) compare
BT4667 -1.6 -7.1 beta-galactosidase (NCBI ptt file) compare
BT1345 -1.6 -4.6 glycosyltransferase (NCBI ptt file) compare
BT3805 -1.6 -3.8 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0572 -1.6 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0004 -1.6 -2.3 hypothetical protein (NCBI ptt file) compare
BT1352 -1.6 -5.2 putative glycosyltransferase HI1698 (NCBI ptt file) compare
BT1344 -1.6 -5.9 putative glycosyltransferase (NCBI ptt file) compare
BT1293 -1.6 -9.1 alpha-glucan phosphorylase (NCBI ptt file) compare
BT1354 -1.5 -6.1 putative flippase (NCBI ptt file) compare
BT2977 -1.5 -6.5 peptidylprolyl isomerase (NCBI ptt file) compare
BT4255 -1.5 -3.0 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT1557 -1.5 -1.9 hypothetical protein (NCBI ptt file) compare
BT4590 -1.5 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT0088 -1.5 -2.8 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1343 -1.5 -4.1 putative capsule biosynthesis protein (NCBI ptt file) compare
BT4237 -1.5 -5.1 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT3368 -1.5 -1.8 putative glycosyltransferase (NCBI ptt file) compare
BT0355 -1.5 -5.6 L-arabinose/L-arabinobiose symporter (from data) compare
BT0146 -1.5 -6.8 unsaturated glucuronyl hydrolase (NCBI ptt file) compare
BT0570 -1.5 -4.8 excinuclease ABC subunit B (NCBI ptt file) compare
BT0356 -1.5 -4.0 aldose 1-epimerase precursor (NCBI ptt file) compare
BT3758 -1.4 -2.4 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT3999 -1.4 -6.4 membrane-bound lytic murein transglycosylase D presursor (NCBI ptt file) compare
BT3369 -1.4 -2.5 putative glycosyltransferase (NCBI ptt file) compare
BT3761 -1.4 -4.0 N-succinylglutamate synthase (from data) compare
BT1091 -1.4 -6.1 cation-transporting ATPase pacS (NCBI ptt file) compare
BT1853 -1.4 -1.3 putative sulfatase (NCBI ptt file) compare
BT3268 -1.4 -1.4 glucose-inhibited division protein A (NCBI ptt file) compare
BT3074 -1.4 -4.6 conserved hypothetical protein (NCBI ptt file) compare
BT1296 -1.4 -4.1 V-type ATP synthase subunit I (NCBI ptt file) compare
BT3256 -1.4 -3.9 serine acetyltransferase (NCBI ptt file) compare
BT2539 -1.4 -3.0 rubredoxin (NCBI ptt file) compare
BT3168 -1.4 -3.6 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT4043 -1.4 -4.7 dimethyladenosine transferase (NCBI ptt file) compare
BT0728 -1.4 -3.4 transcriptional regulator (NCBI ptt file) compare
BT1857 -1.4 -4.7 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT2074 -1.4 -5.9 ketol-acid reductoisomerase (NCBI ptt file) compare
BT2161 -1.3 -1.5 50S ribosomal protein L9 (NCBI ptt file) compare
BT1262 -1.3 -1.6 putative transcriptional regulator (NCBI ptt file) compare
BT3920 -1.3 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0912 -1.3 -1.6 DNA-binding protein HU (NCBI ptt file) compare
BT1739 -1.3 -7.2 excinuclease ABC subunit A (NCBI ptt file) compare
BT1607 -1.3 -2.5 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT4300 -1.3 -3.0 transcription regulator, CRP family (NCBI ptt file) compare
BT2741 -1.3 -2.4 sigma-54 modulation protein (NCBI ptt file) compare
BT0738 -1.3 -3.8 serine hydroxymethyltransferase (NCBI ptt file) compare
BT1667 -1.3 -1.5 hypothetical protein (NCBI ptt file) compare
BT2760 -1.3 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1211 -1.2 -2.2 hypothetical protein (NCBI ptt file) compare
BT0876 -1.2 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT2732 -1.2 -4.3 hypothetical protein (NCBI ptt file) compare
BT2185 -1.2 -3.2 hypothetical protein (NCBI ptt file) compare
BT0552 -1.2 -3.6 glutamate synthase, small subunit (NCBI ptt file) compare
BT3337 -1.2 -5.7 RND efflux system, outer membrane component BipA (from data) compare
BT1859 -1.2 -3.1 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT4699 -1.2 -2.0 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT3694 -1.2 -1.2 glycosyltransferase (NCBI ptt file) compare
BT4049 -1.2 -3.4 putative ArgK protein with ATPase and kinase domains (NCBI ptt file) compare
BT2157 -1.2 -3.1 3-keto-alpha-glucoside 1,2-lyase; 3-ketoglucose dehydratase (from data) compare
BT3840 -1.2 -2.8 putative RNA-binding protein rbpA (NCBI ptt file) compare
BT1232 -1.2 -1.4 hypothetical protein (NCBI ptt file) compare
BT3689 -1.2 -5.2 conserved hypothetical protein (NCBI ptt file) compare
BT1340 -1.2 -3.4 putative lipopolysaccharide biosynthesis glycosyltransferase (NCBI ptt file) compare
BT2237 -1.2 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT4702 -1.2 -1.5 dihydroxynapthoic acid synthetase (NCBI ptt file) compare
BT0875 -1.2 -3.9 beta-ureidopropionase (NCBI ptt file) compare
BT2755 -1.1 -5.6 aspartate ammonia-lyase (NCBI ptt file) compare
BT4048 -1.1 -4.1 hypothetical protein (NCBI ptt file) compare
BT0418 -1.1 -1.7 outer membrane porin F precursor (NCBI ptt file) compare
BT1589 -1.1 -1.6 hypothetical protein (NCBI ptt file) compare
BT0799 -1.1 -1.2 hypothetical protein (NCBI ptt file) compare
BT2437 -1.1 -4.1 hypothetical protein (NCBI ptt file) compare
BT3371 -1.1 -3.0 putative glycosyltransferase yibD (NCBI ptt file) compare
BT1380 -1.1 -2.1 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT3618 -1.1 -3.7 conserved hypothetical protein (NCBI ptt file) compare
BT2406 -1.1 -4.5 putative DNA repair protein (NCBI ptt file) compare
BT1312 -1.1 -2.1 serine protease precursor (NCBI ptt file) compare
BT2071 -1.1 -3.5 isocitrate dehydrogenase [NADP] (NCBI ptt file) compare
BT2299 -1.1 -1.5 conserved protein found in conjugate transposon (NCBI ptt file) compare


Specific Phenotypes

For 4 genes in this experiment

For mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 in Bacteroides thetaiotaomicron VPI-5482

For mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 across organisms