Experiment set34S75 for Bacteroides thetaiotaomicron VPI-5482
cage1; mouse3; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
Group: mouse_cocultureMedia: + diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
Culturing: Btheta_ML6b
By: Anthony Shiver on 4/2/24
Specific Phenotypes
For 4 genes in this experiment
For mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-Galacturonate and D-Glucuronate Utilization | 1 |
| Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Starch and sucrose metabolism
- Pentose and glucuronate interconversions
- Alanine and aspartate metabolism
- Nitrogen metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-glutamate degradation II | 2 | 2 | 1 |
| L-aspartate degradation II (aerobic) | 3 | 2 | 1 |
| L-aspartate degradation III (anaerobic) | 3 | 2 | 1 |
| superpathway of L-aspartate and L-asparagine biosynthesis | 4 | 4 | 1 |
| L-canavanine degradation II | 6 | 1 | 1 |