Experiment set34S73 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

cage1; mouse1; day4; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003

200 most important genes:

  gene name fitness t score description  
BT3320 -6.6 -5.8 dihydrodipicolinate reductase (NCBI ptt file) compare
BT1843 -6.5 -4.5 adenylosuccinate synthetase (NCBI ptt file) compare
BT3933 -5.9 -9.0 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT1374 -5.9 -4.1 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT1757 -5.5 -5.8 fructokinase (NCBI ptt file) compare
BT1375 -5.4 -5.3 aspartokinase (NCBI ptt file) compare
BT0892 -5.3 -2.1 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT4644 -5.1 -3.5 putative anti-sigma factor (NCBI ptt file) compare
BT3253 -5.0 -3.1 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT4610 -4.9 -2.7 RecA (NCBI ptt file) compare
BT2843 -4.8 -3.0 integrase (NCBI ptt file) compare
BT0891 -4.7 -3.0 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT0547 -4.5 -4.3 aspartate aminotransferase (NCBI ptt file) compare
p5482_02 -4.3 -7.3 hypothetical protein (NCBI) compare
BT0556 -4.2 -4.1 carbamoyl phosphate synthetase III (glutamine-hydrolyzing) (NCBI ptt file) compare
BT0557 -4.1 -13.7 carbamyl phosphate synthetase (NCBI ptt file) compare
BT0548 -4.1 -3.9 diaminopimelate epimerase (NCBI ptt file) compare
BT1758 -4.1 -6.3 fructose transporter (from data) compare
BT1733 -4.0 -2.8 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT4211 -3.9 -2.7 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT1747 -3.8 -2.6 pyruvate-flavodoxin oxidoreductase (NCBI ptt file) compare
BT0555 -3.7 -11.3 amidophosphoribosyltransferase (NCBI ptt file) compare
BT3733 -3.6 -17.5 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT3980 -3.6 -2.4 hypothetical protein (NCBI ptt file) compare
BT0353 -3.6 -6.0 putative sugar epimerase/aldolase (NCBI ptt file) compare
BT2049 -3.5 -4.1 transcriptional regulator (NCBI ptt file) compare
BT1220 -3.4 -3.3 6-phosphogluconolactonase (NCBI ptt file) compare
BT0771 -3.4 -8.5 1,4-alpha-glucan branching enzyme (isoamylase or pullulanase type II) (NCBI ptt file) compare
BT4551 -3.3 -2.3 putative GTPase, ThdF family (NCBI ptt file) compare
BT3936 -3.2 -3.4 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT3348 -3.1 -9.5 unsaturated glucuronide lyase acting on chondroitin/heparin disaccharides (EC 3.2.1.180) (from data) compare
BT2841 -3.1 -2.3 pyruvate kinase (NCBI ptt file) compare
BT3260 -3.0 -3.6 DNA polymerase I (NCBI ptt file) compare
BT0351 -2.9 -8.1 L-arabinose isomerase (NCBI ptt file) compare
BT4649 -2.9 -1.8 hypothetical protein (NCBI ptt file) compare
BT4174 -2.8 -7.1 conserved hypothetical protein (NCBI ptt file) compare
BT1343 -2.7 -7.1 putative capsule biosynthesis protein (NCBI ptt file) compare
BT0350 -2.7 -7.6 ribulokinase (EC 2.7.1.16) (from data) compare
BT0572 -2.7 -2.6 conserved hypothetical protein (NCBI ptt file) compare
BT1536 -2.7 -5.8 ABC transporter permease (NCBI ptt file) compare
BT1353 -2.7 -3.2 glycosyltransferase (NCBI ptt file) compare
BT2153 -2.7 -2.2 putative Fe-S oxidoreductases (NCBI ptt file) compare
BT2938 -2.6 -4.1 putative glycosyltransferase (NCBI ptt file) compare
BT3395 -2.6 -9.2 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT4304 -2.6 -13.6 putative glycosyltransferase (NCBI ptt file) compare
BT2487 -2.5 -2.0 hypothetical protein (NCBI ptt file) compare
BT4305 -2.5 -11.1 putative alpha-amylase (NCBI ptt file) compare
BT2415 -2.5 -11.0 aspartate aminotransferase (NCBI ptt file) compare
BT1351 -2.5 -4.1 glucose-1-phosphate cytidylyltransferase (NCBI ptt file) compare
BT1607 -2.5 -5.8 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT3758 -2.4 -4.7 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT3072 -2.4 -8.2 collagenase precursor (NCBI ptt file) compare
BT1222 -2.4 -2.4 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT4658 -2.3 -5.5 glucuronyl hydrolase (NCBI ptt file) compare
BT1363 -2.3 -1.5 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT4098 -2.3 -1.7 Trk system K+ uptake protein trkA (NCBI ptt file) compare
BT1754 -2.3 -11.2 two-component system sensor histidine kinase/response regulator, hybrid ('one component system') (NCBI ptt file) compare
BT0617 -2.3 -1.9 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB (NCBI ptt file) compare
BT2742 -2.3 -0.7 integrase, site-specific recombinase (NCBI ptt file) compare
BT4699 -2.3 -3.8 putative hydrolase, haloacid dehalogenase-like hydrolase (NCBI ptt file) compare
BT3717 -2.3 -7.1 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1759 -2.3 -6.0 levanase precursor (2,6-beta-D-fructofuranosidase) (NCBI ptt file) compare
BT2397 -2.2 -6.2 conserved hypothetical protein (NCBI ptt file) compare
BT0747 -2.2 -2.1 putative phosphatidylinositol-4-phosphate 5-kinase (NCBI ptt file) compare
BT0156 -2.2 -1.5 transcriptional regulator (NCBI ptt file) compare
BT1350 -2.2 -7.0 CDP-glucose 4,6-dehydratase (NCBI ptt file) compare
BT1355 -2.2 -5.8 hypothetical protein (NCBI ptt file) compare
BT3712 -2.2 -4.8 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) compare
BT3191 -2.2 -4.1 hypothetical protein (NCBI ptt file) compare
BT1347 -2.2 -4.6 conserved hypothetical protein (NCBI ptt file) compare
BT0546 -2.2 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT1346 -2.1 -6.0 capsule biosynthesis protein capA (NCBI ptt file) compare
BT2944 -2.1 -8.6 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT2090 -2.1 -9.7 methylmalonyl-CoA mutase large subunit (NCBI ptt file) compare
BT1342 -2.1 -7.5 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT4349 -2.1 -2.8 hypothetical protein (NCBI ptt file) compare
BT4303 -2.1 -11.0 glycogen debranching enzyme-related protein (4-alpha-glucanotransferase) (NCBI ptt file) compare
BT1339 -2.1 -7.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (NCBI ptt file) compare
BT3550 -2.0 -5.3 putative long-chain-fatty-acid--CoA ligase (NCBI ptt file) compare
BT0927 -2.0 -1.2 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0146 -2.0 -8.4 unsaturated glucuronyl hydrolase (NCBI ptt file) compare
BT3168 -2.0 -5.8 putative Fe-S oxidoreductase (NCBI ptt file) compare
BT4043 -2.0 -8.1 dimethyladenosine transferase (NCBI ptt file) compare
BT3074 -2.0 -4.8 conserved hypothetical protein (NCBI ptt file) compare
BT4330 -2.0 -7.9 xanthosine permease (NCBI ptt file) compare
BT3981 -2.0 -1.3 hypothetical protein (NCBI ptt file) compare
BT2161 -2.0 -2.0 50S ribosomal protein L9 (NCBI ptt file) compare
BT0155 -2.0 -1.4 putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) compare
BT2091 -1.9 -5.8 methylmalonyl-CoA mutase small subunit (NCBI ptt file) compare
BT3371 -1.9 -4.1 putative glycosyltransferase yibD (NCBI ptt file) compare
BT3935 -1.9 -5.1 aminotransferase (NCBI ptt file) compare
BT2438 -1.9 -6.3 hypothetical protein (NCBI ptt file) compare
BT0652 -1.9 -2.1 putative thiamine-phosphate pyrophosphorylase (NCBI ptt file) compare
BT3431 -1.9 -4.3 DNA repair protein (NCBI ptt file) compare
BT3342 -1.9 -4.6 hypothetical protein (NCBI ptt file) compare
BT3801 -1.9 -2.6 rteB, two-component system response regulator (NCBI ptt file) compare
BT1348 -1.9 -4.4 CDP-abequose synthase (NCBI ptt file) compare
BT0616 -1.9 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT4187 -1.8 -8.9 exo-alpha-D-galacturonosidase for catabolism of rhamnogalacturonan I and polygalacturonate (from data) compare
BT4025 -1.8 -1.8 hypothetical protein (NCBI ptt file) compare
BT2945 -1.8 -6.8 UDP-N-acetyl-D-mannosamine dehydrogenase (NCBI ptt file) compare
BT1912 -1.8 -1.5 hypothetical protein (NCBI ptt file) compare
BT4191 -1.8 -12.5 hypothetical protein (NCBI ptt file) compare
BT0352 -1.8 -1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0618 -1.8 -1.9 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC (NCBI ptt file) compare
BT2006 -1.8 -1.8 hypothetical protein (NCBI ptt file) compare
BT0370 -1.8 -6.6 galactokinase (NCBI ptt file) compare
BT0912 -1.8 -1.7 DNA-binding protein HU (NCBI ptt file) compare
BT4668 -1.8 -3.7 arabinogalactan endo-1,4-beta-galactosidase (NCBI ptt file) compare
BT0621 -1.8 -2.0 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file) compare
BT1344 -1.8 -6.5 putative glycosyltransferase (NCBI ptt file) compare
BT1844 -1.8 -2.8 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT3370 -1.8 -3.3 putative glycosyltransferase yibD (NCBI ptt file) compare
BT4255 -1.8 -2.9 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) compare
BT0723 -1.7 -2.0 hypothetical protein (NCBI ptt file) compare
BT3369 -1.7 -2.3 putative glycosyltransferase (NCBI ptt file) compare
BT1526 -1.7 -5.0 myo-inositol-1-phosphate synthase (NCBI ptt file) compare
BT1293 -1.7 -10.1 alpha-glucan phosphorylase (NCBI ptt file) compare
BT3549 -1.7 -6.2 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT1354 -1.7 -6.3 putative flippase (NCBI ptt file) compare
BT3999 -1.7 -7.3 membrane-bound lytic murein transglycosylase D presursor (NCBI ptt file) compare
BT0173 -1.7 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0570 -1.7 -5.2 excinuclease ABC subunit B (NCBI ptt file) compare
BT0122 -1.6 -3.6 3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file) compare
BT4570 -1.6 -3.4 hypothetical protein (NCBI ptt file) compare
BT1358 -1.6 -3.1 putative transcriptional regulator (NCBI ptt file) compare
BT1340 -1.6 -4.0 putative lipopolysaccharide biosynthesis glycosyltransferase (NCBI ptt file) compare
BT2167 -1.6 -7.8 elongation factor G (NCBI ptt file) compare
BT1361 -1.6 -5.0 DNA repair protein recN (Recombination protein N) (NCBI ptt file) compare
BT2437 -1.6 -4.6 hypothetical protein (NCBI ptt file) compare
BT1857 -1.6 -6.2 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT1539 -1.6 -3.5 cytidine deaminase (NCBI ptt file) compare
BT4237 -1.6 -4.3 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT1352 -1.6 -4.3 putative glycosyltransferase HI1698 (NCBI ptt file) compare
BT1641 -1.6 -2.1 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT0258 -1.6 -7.1 glucosamine-6-phosphate isomerase (NCBI ptt file) compare
BT1345 -1.6 -5.4 glycosyltransferase (NCBI ptt file) compare
BT2046 -1.6 -1.1 putative cardiolipin synthetase (NCBI ptt file) compare
BT0356 -1.6 -4.5 aldose 1-epimerase precursor (NCBI ptt file) compare
BT3759 -1.5 -6.5 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT4103 -1.5 -3.2 putative Sec-independent protein translocase (NCBI ptt file) compare
BT0405 -1.5 -1.4 hypothetical protein (NCBI ptt file) compare
BT0578 -1.5 -6.0 excinuclease ABC subunit A (NCBI ptt file) compare
BT3210 -1.5 -2.6 cell division protein FtsX (NCBI ptt file) compare
BT1356 -1.5 -3.9 putative capsule polysaccharide export protein (NCBI ptt file) compare
BT3688 -1.5 -7.9 putative acetyltransferase (NCBI ptt file) compare
BT3268 -1.5 -1.0 glucose-inhibited division protein A (NCBI ptt file) compare
BT1068 -1.5 -2.3 hypothetical protein (NCBI ptt file) compare
BT2021 -1.5 -4.2 conserved hypothetical protein, putative non-specific DNA-binding protein (NCBI ptt file) compare
BT2732 -1.5 -7.6 hypothetical protein (NCBI ptt file) compare
BT0954 -1.5 -3.3 conserved hypothetical protein (NCBI ptt file) compare
BT1296 -1.5 -4.0 V-type ATP synthase subunit I (NCBI ptt file) compare
BT2272 -1.5 -4.5 conserved hypothetical protein (NCBI ptt file) compare
BT1091 -1.5 -6.1 cation-transporting ATPase pacS (NCBI ptt file) compare
BT0529 -1.5 -3.1 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT3770 -1.4 -1.7 transcriptional regulator (NCBI ptt file) compare
BT0355 -1.4 -5.4 L-arabinose/L-arabinobiose symporter (from data) compare
BT1341 -1.4 -4.1 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
BT0700 -1.4 -5.1 GTP pyrophosphokinase (NCBI ptt file) compare
BT0476 -1.4 -2.2 D-mannose-1-phosphate guanyltransferase (NCBI ptt file) compare
BT3819 -1.4 -3.3 conserved hypothetical protein (NCBI ptt file) compare
BT4195 -1.4 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1530 -1.4 -5.1 putative outer membrane protein OprM precursor (NCBI ptt file) compare
BT0738 -1.4 -3.6 serine hydroxymethyltransferase (NCBI ptt file) compare
BT0900 -1.4 -2.4 putative tetratricopeptide repeat family protein (NCBI ptt file) compare
BT1739 -1.4 -7.4 excinuclease ABC subunit A (NCBI ptt file) compare
BT1613 -1.4 -5.2 conserved hypothetical protein (NCBI ptt file) compare
BT1746 -1.4 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT3337 -1.4 -6.0 RND efflux system, outer membrane component BipA (from data) compare
BT0875 -1.4 -3.2 beta-ureidopropionase (NCBI ptt file) compare
BT3761 -1.4 -3.6 N-succinylglutamate synthase (from data) compare
BT1304 -1.4 -1.3 putative transcriptional regulator (NCBI ptt file) compare
BT1295 -1.4 -2.0 V-type sodium ATP synthase subunit K (NCBI ptt file) compare
BT1524 -1.4 -1.2 hypothetical protein (NCBI ptt file) compare
BT2071 -1.4 -4.2 isocitrate dehydrogenase [NADP] (NCBI ptt file) compare
BT3256 -1.3 -3.3 serine acetyltransferase (NCBI ptt file) compare
BT0544 -1.3 -2.7 ammonium transporter (NCBI ptt file) compare
BT1103 -1.3 -2.3 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT3232 -1.3 -1.3 gluconate 5-dehydrogenase (NCBI ptt file) compare
BT2449 -1.3 -1.6 hypothetical protein (NCBI ptt file) compare
BT2145 -1.3 -7.6 ribonucleoside-diphosphate reductase alpha chain (NCBI ptt file) compare
BT0774 -1.3 -2.6 conserved protein with a conserved patatin-like phospholipase domain (NCBI ptt file) compare
BT2741 -1.3 -2.1 sigma-54 modulation protein (NCBI ptt file) compare
BT0820 -1.3 -2.0 conserved hypothetical protein (NCBI ptt file) compare
BT3193 -1.3 -6.2 putative coenzyme A transferase (NCBI ptt file) compare
BT2760 -1.3 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT4003 -1.2 -2.0 stationary-phase survival protein SurE (NCBI ptt file) compare
BT4599 -1.2 -2.8 putative transcriptional regulator (NCBI ptt file) compare
BT0527 -1.2 -3.6 tryptophan synthase alpha chain (NCBI ptt file) compare
BT2157 -1.2 -2.7 3-keto-alpha-glucoside 1,2-lyase; 3-ketoglucose dehydratase (from data) compare
BT4776 -1.2 -2.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2977 -1.2 -4.9 peptidylprolyl isomerase (NCBI ptt file) compare
BT3727 -1.2 -3.4 hypothetical protein (NCBI ptt file) compare
BT1143 -1.2 -1.3 conserved hypothetical protein (NCBI ptt file) compare
BT2755 -1.2 -6.3 aspartate ammonia-lyase (NCBI ptt file) compare
BT3760 -1.2 -3.3 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT0545 -1.2 -1.6 nitrogen regulatory protein P-II (NCBI ptt file) compare
BT0876 -1.2 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1859 -1.2 -3.1 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT0088 -1.2 -1.6 conserved protein found in conjugate transposon (NCBI ptt file) compare


Specific Phenotypes

For 5 genes in this experiment

For mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 in Bacteroides thetaiotaomicron VPI-5482

For mouse_coculture diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003 across organisms