Experiment set34S277 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -6.9 -3.8 phosphoglycerate kinase compare
BPHYT_RS17400 -6.0 -8.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS17945 -5.8 -1.6 cytochrome C biogenesis protein compare
BPHYT_RS06400 -5.6 -3.9 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS12845 -5.2 -16.2 ATPase compare
BPHYT_RS33875 -4.9 -9.4 tryptophan synthase subunit alpha compare
BPHYT_RS33880 -4.7 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS15915 -4.7 -7.8 ornithine carbamoyltransferase compare
BPHYT_RS15920 -4.7 -12.4 argininosuccinate synthase compare
BPHYT_RS04955 -4.5 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS33915 -4.5 -7.7 isopropylmalate isomerase compare
BPHYT_RS35885 -4.5 -3.8 hypothetical protein compare
BPHYT_RS17920 -4.4 -1.2 protein CyaY compare
BPHYT_RS17380 -4.2 -10.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS33835 -4.1 -7.2 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS03150 -4.1 -13.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33900 -4.0 -12.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS18655 -4.0 -3.4 3-oxoacyl-ACP synthase compare
BPHYT_RS17890 -3.9 -1.9 shikimate kinase compare
BPHYT_RS14895 -3.9 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS02590 -3.8 -9.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS02690 -3.8 -7.8 protoheme IX farnesyltransferase compare
BPHYT_RS06070 -3.8 -13.1 cytochrome C compare
BPHYT_RS14865 -3.8 -1.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS04740 -3.8 -7.9 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS06900 -3.7 -7.0 aspartate aminotransferase compare
BPHYT_RS04725 -3.6 -9.1 sulfite reductase compare
BPHYT_RS06065 -3.6 -12.3 cytochrome C compare
BPHYT_RS09860 -3.6 -1.0 pilus assembly protein PilP compare
BPHYT_RS16835 -3.6 -6.4 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06545 -3.6 -12.1 acetolactate synthase compare
BPHYT_RS02570 -3.6 -7.4 phosphocarrier protein HPr compare
BPHYT_RS18320 -3.6 -4.3 orotate phosphoribosyltransferase compare
BPHYT_RS01595 -3.6 -9.9 homoserine O-acetyltransferase compare
BPHYT_RS33580 -3.6 -4.7 geranyltranstransferase compare
BPHYT_RS16245 -3.6 -2.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06555 -3.6 -9.6 ketol-acid reductoisomerase compare
BPHYT_RS04965 -3.5 -7.8 ATP-binding protein compare
BPHYT_RS02665 -3.5 -7.6 MFS transporter compare
BPHYT_RS17395 -3.5 -2.2 anthranilate synthase subunit II compare
BPHYT_RS02650 -3.5 -1.7 membrane protein compare
BPHYT_RS08955 -3.5 -4.8 homoserine dehydrogenase compare
BPHYT_RS17390 -3.5 -13.8 anthranilate synthase subunit I compare
BPHYT_RS06975 -3.4 -1.9 glutamate racemase compare
BPHYT_RS33865 -3.4 -8.6 tryptophan synthase alpha chain compare
BPHYT_RS02525 -3.3 -6.0 membrane protein compare
BPHYT_RS02640 -3.3 -9.8 cytochrome C oxidase compare
BPHYT_RS02610 -3.2 -4.7 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS04720 -3.2 -8.5 transcriptional regulator compare
BPHYT_RS14910 -3.2 -11.9 chorismate mutase compare
BPHYT_RS33920 -3.1 -3.7 type II citrate synthase compare
BPHYT_RS13705 -3.1 -3.2 chorismate synthase compare
BPHYT_RS17885 -3.1 -5.0 3-dehydroquinate synthase compare
BPHYT_RS12150 -3.0 -15.0 PII uridylyl-transferase compare
BPHYT_RS34780 -3.0 -3.4 phytoene synthase compare
BPHYT_RS14845 -3.0 -1.9 cysteine synthase compare
BPHYT_RS16665 -3.0 -2.2 peroxiredoxin compare
BPHYT_RS16710 -3.0 -0.8 LysR family transcriptional regulator compare
BPHYT_RS08960 -3.0 -1.4 threonine synthase compare
BPHYT_RS17405 -2.9 -1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS33840 -2.9 -6.3 amidophosphoribosyltransferase compare
BPHYT_RS33645 -2.8 -3.7 homoserine kinase compare
BPHYT_RS24315 -2.8 -1.9 phosphoribosyltransferase compare
BPHYT_RS12465 -2.7 -1.4 inositol monophosphatase compare
BPHYT_RS17760 -2.7 -5.3 ABC transporter permease compare
BPHYT_RS18705 -2.7 -1.7 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS06610 -2.7 -1.4 triosephosphate isomerase compare
BPHYT_RS13080 -2.6 -1.4 hypothetical protein compare
BPHYT_RS17685 -2.6 -8.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS09480 -2.6 -1.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02685 -2.6 -4.3 cytochrome C oxidase subunit I compare
BPHYT_RS14275 -2.6 -2.1 hypothetical protein compare
BPHYT_RS26685 -2.6 -1.0 precorrin-8X methylmutase compare
BPHYT_RS25135 -2.5 -1.5 hypothetical protein compare
BPHYT_RS17765 -2.5 -3.8 toluene ABC transporter ATP-binding protein compare
BPHYT_RS27570 -2.5 -2.3 universal stress protein UspA compare
BPHYT_RS17095 -2.5 -2.4 proline--tRNA ligase compare
BPHYT_RS19325 -2.5 -2.5 glycine cleavage system H protein compare
BPHYT_RS06530 -2.5 -1.9 membrane protein compare
BPHYT_RS16340 -2.5 -4.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS17520 -2.5 -4.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS10095 -2.4 -1.6 integrase compare
BPHYT_RS04730 -2.4 -3.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS04080 -2.4 -4.5 chloride channel protein compare
BPHYT_RS15710 -2.4 -1.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS12725 -2.4 -12.8 regulator compare
BPHYT_RS18255 -2.3 -2.0 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS04745 -2.3 -4.4 sulfate adenylyltransferase compare
BPHYT_RS36385 -2.3 -0.9 TetR family transcriptional regulator compare
BPHYT_RS03215 -2.3 -2.3 TetR family transcriptional regulator compare
BPHYT_RS12985 -2.3 -1.2 amino acid acetyltransferase compare
BPHYT_RS17690 -2.3 -10.7 imidazole glycerol phosphate synthase compare
BPHYT_RS06685 -2.2 -1.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS13890 -2.2 -2.3 RpiR family transcriptional regulator compare
BPHYT_RS12990 -2.2 -1.9 iron transporter compare
BPHYT_RS07325 -2.2 -0.8 GntR family transcriptional regulator compare
BPHYT_RS33905 -2.2 -1.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS17755 -2.2 -3.4 ABC transporter substrate-binding protein compare
BPHYT_RS14915 -2.2 -7.9 phosphoserine aminotransferase compare
BPHYT_RS10240 -2.2 -1.0 translation initiation inhibitor compare
BPHYT_RS02860 -2.2 -0.6 membrane protein compare
BPHYT_RS16905 -2.1 -3.4 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS14190 -2.1 -2.5 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17855 -2.1 -10.9 glutamate synthase compare
BPHYT_RS16435 -2.1 -5.8 alcohol dehydrogenase compare
BPHYT_RS02045 -2.1 -4.0 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS03645 -2.1 -1.8 tRNA dimethylallyltransferase compare
BPHYT_RS14245 -2.1 -1.1 membrane protein compare
BPHYT_RS06435 -2.1 -1.5 hypothetical protein compare
BPHYT_RS16345 -2.1 -3.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS16430 -2.0 -12.1 cytochrome C compare
BPHYT_RS06405 -2.0 -4.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS16320 -2.0 -2.9 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS06550 -2.0 -2.1 acetolactate synthase compare
BPHYT_RS28910 -2.0 -1.7 diguanylate phosphodiesterase compare
BPHYT_RS06535 -2.0 -3.8 membrane protein compare
BPHYT_RS12530 -2.0 -4.1 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS02635 -2.0 -6.5 membrane protein compare
BPHYT_RS06155 -2.0 -6.3 DEAD/DEAH box helicase compare
BPHYT_RS17715 -1.9 -7.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS16990 -1.9 -6.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS12955 -1.9 -5.3 damage-inducible protein compare
BPHYT_RS08945 -1.9 -8.2 hypothetical protein compare
BPHYT_RS02575 -1.9 -6.4 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS24285 -1.9 -1.3 TetR family transcriptional regulator compare
BPHYT_RS14755 -1.9 -2.3 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS15415 -1.9 -8.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS25780 -1.9 -0.9 DeoR faimly transcriptional regulator compare
BPHYT_RS11555 -1.8 -2.1 allantoinase compare
BPHYT_RS28905 -1.8 -1.4 alpha-dehydro-beta-deoxy-D-glucarate aldolase compare
BPHYT_RS08850 -1.8 -1.0 transcriptional regulator compare
BPHYT_RS19680 -1.8 -6.2 glutamate--cysteine ligase compare
BPHYT_RS17680 -1.8 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS14210 -1.8 -4.5 hydroxyacylglutathione hydrolase compare
BPHYT_RS06375 -1.8 -4.3 ribonuclease compare
BPHYT_RS16945 -1.8 -5.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS20840 -1.8 -1.8 beta-lactamase compare
BPHYT_RS02695 -1.7 -5.6 photosynthetic protein synthase I compare
BPHYT_RS10100 -1.7 -4.5 dihydroxy-acid dehydratase compare
BPHYT_RS23600 -1.7 -1.9 hypothetical protein compare
BPHYT_RS11480 -1.7 -3.1 heme ABC transporter ATP-binding protein compare
BPHYT_RS10135 -1.7 -0.9 hypothetical protein compare
BPHYT_RS02885 -1.7 -7.6 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS09650 -1.7 -1.5 hypothetical protein compare
BPHYT_RS05490 -1.7 -4.0 porin compare
BPHYT_RS17745 -1.7 -4.9 toluene tolerance family protein compare
BPHYT_RS07690 -1.7 -2.0 AraC family transcriptional regulator compare
BPHYT_RS00325 -1.6 -1.5 hypothetical protein compare
BPHYT_RS01685 -1.6 -7.8 phytanoyl-CoA dioxygenase compare
BPHYT_RS28365 -1.6 -1.1 Germin subfamily 1 member 15 compare
BPHYT_RS22505 -1.6 -2.5 alpha/beta hydrolase compare
BPHYT_RS32150 -1.6 -1.7 hypothetical protein compare
BPHYT_RS11825 -1.6 -0.9 cytosine deaminase compare
BPHYT_RS22730 -1.6 -3.2 serine/threonine kinase compare
BPHYT_RS16065 -1.6 -0.8 LacI family transcriptional regulator compare
BPHYT_RS13895 -1.6 -2.5 sugar ABC transporter substrate-binding protein compare
BPHYT_RS09440 -1.6 -2.8 glycerate kinase compare
BPHYT_RS36220 -1.6 -1.1 hypothetical protein compare
BPHYT_RS18260 -1.5 -6.7 phenylacetic acid degradation protein compare
BPHYT_RS00815 -1.5 -0.9 hypothetical protein compare
BPHYT_RS14715 -1.5 -6.5 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS17525 -1.5 -1.5 glutaredoxin compare
BPHYT_RS26855 -1.5 -1.7 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS34295 -1.5 -0.8 fimbrial protein compare
BPHYT_RS09330 -1.5 -5.2 phytoene synthase compare
BPHYT_RS01630 -1.5 -1.5 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS11040 -1.5 -1.0 GntR family transcriptional regulator compare
BPHYT_RS02680 -1.5 -5.7 cytochrome C oxidase subunit I compare
BPHYT_RS12615 -1.5 -0.9 dihydrodipicolinate synthase compare
BPHYT_RS17700 -1.4 -2.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS08125 -1.4 -6.0 ATPase compare
BPHYT_RS16075 -1.4 -9.2 D-arabinitol 4-dehydrogenase compare
BPHYT_RS06075 -1.4 -3.9 hypothetical protein compare
BPHYT_RS13350 -1.4 -3.9 shikimate kinase compare
BPHYT_RS03170 -1.4 -1.8 membrane protein compare
BPHYT_RS30235 -1.4 -2.7 tartrate dehydrogenase compare
BPHYT_RS06600 -1.4 -1.2 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS01660 -1.4 -1.9 hypothetical protein compare
BPHYT_RS09500 -1.4 -3.9 glucose-6-phosphate isomerase compare
BPHYT_RS08130 -1.4 -1.1 transposase compare
BPHYT_RS12265 -1.4 -1.1 alanine acetyltransferase compare
BPHYT_RS06990 -1.4 -1.0 membrane protein compare
BPHYT_RS02755 -1.4 -0.6 cyd operon protein YbgT compare
BPHYT_RS05895 -1.3 -1.0 hypothetical protein compare
BPHYT_RS19340 -1.3 -5.1 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
BPHYT_RS03640 -1.3 -0.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06915 -1.3 -1.5 hypothetical protein compare
BPHYT_RS15950 -1.3 -2.7 tyrosine recombinase XerD compare
BPHYT_RS13835 -1.3 -0.9 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS30340 -1.3 -1.5 AraC family transcriptional regulator compare
BPHYT_RS31910 -1.3 -0.8 hypothetical protein compare
BPHYT_RS09145 -1.3 -6.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS02560 -1.3 -4.8 glutathione synthetase compare
BPHYT_RS31060 -1.3 -0.9 capsular polysaccharide biosynthesis protein compare
BPHYT_RS17955 -1.3 -3.2 cytochrome C compare
BPHYT_RS17265 -1.3 -0.9 cell division protein compare
BPHYT_RS31815 -1.3 -2.4 hypothetical protein compare
BPHYT_RS13915 -1.3 -1.9 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
BPHYT_RS17630 -1.3 -3.3 ubiquinol-cytochrome C reductase compare
BPHYT_RS10740 -1.3 -0.9 LuxR family transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days across organisms