Experiment set34S264 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17400 -6.0 -8.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS02610 -5.8 -5.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS16270 -5.8 -4.8 phosphoglycerate kinase compare
BPHYT_RS02690 -5.8 -11.1 protoheme IX farnesyltransferase compare
BPHYT_RS16835 -5.2 -6.7 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS33865 -5.2 -8.0 tryptophan synthase alpha chain compare
BPHYT_RS13705 -5.2 -3.6 chorismate synthase compare
BPHYT_RS33880 -5.0 -11.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06400 -5.0 -5.9 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS12845 -4.9 -17.2 ATPase compare
BPHYT_RS17685 -4.8 -10.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS17690 -4.6 -13.4 imidazole glycerol phosphate synthase compare
BPHYT_RS04955 -4.5 -2.1 methionyl-tRNA synthetase compare
BPHYT_RS17380 -4.5 -11.0 ribulose-phosphate 3-epimerase compare
BPHYT_RS17945 -4.5 -2.0 cytochrome C biogenesis protein compare
BPHYT_RS02590 -4.3 -8.6 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS08955 -4.3 -5.0 homoserine dehydrogenase compare
BPHYT_RS17405 -4.2 -1.4 indole-3-glycerol phosphate synthase compare
BPHYT_RS35885 -4.2 -5.4 hypothetical protein compare
BPHYT_RS02685 -4.2 -8.6 cytochrome C oxidase subunit I compare
BPHYT_RS17700 -4.2 -5.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS18320 -4.2 -4.1 orotate phosphoribosyltransferase compare
BPHYT_RS25135 -4.1 -1.9 hypothetical protein compare
BPHYT_RS17890 -4.1 -2.2 shikimate kinase compare
BPHYT_RS14895 -4.1 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS15915 -4.0 -10.7 ornithine carbamoyltransferase compare
BPHYT_RS33875 -4.0 -10.2 tryptophan synthase subunit alpha compare
BPHYT_RS33645 -3.9 -5.3 homoserine kinase compare
BPHYT_RS17395 -3.8 -2.5 anthranilate synthase subunit II compare
BPHYT_RS15920 -3.8 -10.8 argininosuccinate synthase compare
BPHYT_RS17390 -3.8 -12.4 anthranilate synthase subunit I compare
BPHYT_RS17095 -3.7 -2.5 proline--tRNA ligase compare
BPHYT_RS03150 -3.7 -14.8 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS33900 -3.6 -12.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS10095 -3.6 -2.6 integrase compare
BPHYT_RS06545 -3.6 -12.0 acetolactate synthase compare
BPHYT_RS06555 -3.6 -9.8 ketol-acid reductoisomerase compare
BPHYT_RS06975 -3.5 -2.3 glutamate racemase compare
BPHYT_RS03645 -3.5 -2.2 tRNA dimethylallyltransferase compare
BPHYT_RS33915 -3.5 -7.4 isopropylmalate isomerase compare
BPHYT_RS17680 -3.4 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS06550 -3.4 -2.1 acetolactate synthase compare
BPHYT_RS04965 -3.4 -8.8 ATP-binding protein compare
BPHYT_RS02665 -3.4 -11.7 MFS transporter compare
BPHYT_RS06610 -3.4 -1.5 triosephosphate isomerase compare
BPHYT_RS17885 -3.3 -5.1 3-dehydroquinate synthase compare
BPHYT_RS16245 -3.3 -3.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33835 -3.3 -7.5 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS02525 -3.3 -6.6 membrane protein compare
BPHYT_RS33840 -3.3 -6.3 amidophosphoribosyltransferase compare
BPHYT_RS06530 -3.3 -2.1 membrane protein compare
BPHYT_RS14845 -3.2 -2.2 cysteine synthase compare
BPHYT_RS18910 -3.2 -1.7 FlgN compare
BPHYT_RS06900 -3.2 -6.0 aspartate aminotransferase compare
BPHYT_RS31910 -3.1 -1.4 hypothetical protein compare
BPHYT_RS13890 -3.1 -3.8 RpiR family transcriptional regulator compare
BPHYT_RS33920 -3.1 -4.2 type II citrate synthase compare
BPHYT_RS06405 -3.1 -5.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS08960 -3.1 -1.7 threonine synthase compare
BPHYT_RS01595 -3.1 -10.5 homoserine O-acetyltransferase compare
BPHYT_RS16710 -3.0 -1.0 LysR family transcriptional regulator compare
BPHYT_RS17675 -3.0 -2.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS06065 -3.0 -13.5 cytochrome C compare
BPHYT_RS12465 -2.9 -1.8 inositol monophosphatase compare
BPHYT_RS17715 -2.9 -10.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS02640 -2.9 -8.1 cytochrome C oxidase compare
BPHYT_RS06070 -2.9 -7.9 cytochrome C compare
BPHYT_RS14865 -2.9 -1.9 UDP-glucose 6-dehydrogenase compare
BPHYT_RS17855 -2.8 -13.1 glutamate synthase compare
BPHYT_RS02570 -2.8 -5.0 phosphocarrier protein HPr compare
BPHYT_RS14910 -2.8 -12.2 chorismate mutase compare
BPHYT_RS17670 -2.6 -4.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS14915 -2.6 -8.3 phosphoserine aminotransferase compare
BPHYT_RS15710 -2.6 -1.4 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS33905 -2.5 -1.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS22470 -2.5 -1.6 hydrolase compare
BPHYT_RS12150 -2.5 -13.0 PII uridylyl-transferase compare
BPHYT_RS17760 -2.5 -5.2 ABC transporter permease compare
BPHYT_RS12985 -2.5 -1.6 amino acid acetyltransferase compare
BPHYT_RS33580 -2.5 -3.2 geranyltranstransferase compare
BPHYT_RS12530 -2.5 -5.4 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS16345 -2.4 -3.6 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS18590 -2.4 -1.1 hypothetical protein compare
BPHYT_RS30365 -2.4 -1.3 beta-lactamase compare
BPHYT_RS16905 -2.4 -3.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12725 -2.3 -12.6 regulator compare
BPHYT_RS16340 -2.3 -4.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS17520 -2.3 -4.2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS11705 -2.2 -1.4 hypothetical protein compare
BPHYT_RS28660 -2.2 -1.4 polyvinylalcohol dehydrogenase compare
BPHYT_RS04455 -2.2 -1.4 glycosyl transferase compare
BPHYT_RS15620 -2.2 -3.0 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12840 -2.2 -2.5 pyruvate dehydrogenase compare
BPHYT_RS24285 -2.2 -1.6 TetR family transcriptional regulator compare
BPHYT_RS14190 -2.2 -3.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS09160 -2.1 -4.0 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS17765 -2.1 -6.4 toluene ABC transporter ATP-binding protein compare
BPHYT_RS36275 -2.1 -2.3 hypothetical protein compare
BPHYT_RS15890 -2.0 -1.1 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
BPHYT_RS34780 -2.0 -4.7 phytoene synthase compare
BPHYT_RS08850 -2.0 -1.2 transcriptional regulator compare
BPHYT_RS16065 -2.0 -1.1 LacI family transcriptional regulator compare
BPHYT_RS16180 -2.0 -1.1 TetR family transcriptional regulator compare
BPHYT_RS25780 -2.0 -1.1 DeoR faimly transcriptional regulator compare
BPHYT_RS14755 -2.0 -2.5 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS10740 -2.0 -1.4 LuxR family transcriptional regulator compare
BPHYT_RS06685 -2.0 -1.7 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS01300 -2.0 -5.9 ArsR family transcriptional regulator compare
BPHYT_RS18705 -2.0 -1.7 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS00690 -2.0 -1.2 transcriptional regulator compare
BPHYT_RS08945 -1.9 -9.8 hypothetical protein compare
BPHYT_RS06155 -1.9 -6.9 DEAD/DEAH box helicase compare
BPHYT_RS12990 -1.9 -1.6 iron transporter compare
BPHYT_RS15415 -1.9 -8.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS16320 -1.8 -2.9 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS33615 -1.8 -2.9 decarboxylase compare
BPHYT_RS13885 -1.8 -1.6 myo-inositol 2-dehydrogenase compare
BPHYT_RS17630 -1.8 -4.9 ubiquinol-cytochrome C reductase compare
BPHYT_RS02650 -1.8 -1.6 membrane protein compare
BPHYT_RS06535 -1.8 -3.2 membrane protein compare
BPHYT_RS17755 -1.7 -3.8 ABC transporter substrate-binding protein compare
BPHYT_RS09480 -1.7 -1.1 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS03280 -1.7 -1.1 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS09330 -1.7 -6.7 phytoene synthase compare
BPHYT_RS02635 -1.7 -5.9 membrane protein compare
BPHYT_RS09825 -1.7 -2.2 Fe-S protein compare
BPHYT_RS02965 -1.7 -2.8 membrane protein compare
BPHYT_RS05730 -1.7 -2.2 hypothetical protein compare
BPHYT_RS19610 -1.7 -1.6 general secretion pathway protein GspC compare
BPHYT_RS28830 -1.7 -0.9 LysR family transcriptional regulator compare
BPHYT_RS26535 -1.6 -5.0 GntR family transcriptional regulator compare
BPHYT_RS33155 -1.6 -2.6 hypothetical protein compare
BPHYT_RS18655 -1.6 -3.7 3-oxoacyl-ACP synthase compare
BPHYT_RS17745 -1.6 -5.5 toluene tolerance family protein compare
BPHYT_RS12025 -1.6 -6.7 multidrug DMT transporter permease compare
BPHYT_RS09980 -1.6 -1.3 TetR family transcriptional regulator compare
BPHYT_RS06375 -1.6 -3.8 ribonuclease compare
BPHYT_RS20130 -1.6 -2.2 diguanylate phosphodiesterase compare
BPHYT_RS33655 -1.6 -4.0 MarR family transcriptional regulator compare
BPHYT_RS06190 -1.6 -2.7 heptosyltransferase compare
BPHYT_RS16175 -1.6 -1.7 hemolysin D compare
BPHYT_RS09515 -1.5 -1.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS13915 -1.5 -1.6 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
BPHYT_RS06410 -1.5 -2.4 transcriptional regulator compare
BPHYT_RS08665 -1.5 -1.0 hypothetical protein compare
BPHYT_RS25815 -1.5 -1.9 deoxyribose-phosphate aldolase compare
BPHYT_RS13920 -1.5 -5.4 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
BPHYT_RS23410 -1.5 -1.5 hypothetical protein compare
BPHYT_RS08245 -1.4 -3.7 anti-sigma factor compare
BPHYT_RS12615 -1.4 -1.1 dihydrodipicolinate synthase compare
BPHYT_RS32260 -1.4 -0.7 hypothetical protein compare
BPHYT_RS16840 -1.4 -1.0 transketolase compare
BPHYT_RS13645 -1.4 -11.2 threonine--tRNA ligase compare
BPHYT_RS16435 -1.4 -8.9 alcohol dehydrogenase compare
BPHYT_RS03725 -1.4 -0.7 serine hydroxymethyltransferase compare
BPHYT_RS22360 -1.4 -2.2 response regulator receiver compare
BPHYT_RS23270 -1.4 -1.0 enoyl-CoA hydratase compare
BPHYT_RS14400 -1.4 -2.2 anti-sigma factor compare
BPHYT_RS06075 -1.4 -3.8 hypothetical protein compare
BPHYT_RS18970 -1.4 -8.0 chemotaxis protein compare
BPHYT_RS12055 -1.4 -9.7 phosphoenolpyruvate synthase compare
BPHYT_RS14715 -1.4 -4.1 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS17625 -1.4 -8.4 cytochrome B compare
BPHYT_RS09070 -1.3 -4.0 recombination protein RecR compare
BPHYT_RS12590 -1.3 -1.7 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS28620 -1.3 -1.8 enoyl-CoA hydratase compare
BPHYT_RS20155 -1.3 -1.1 hypothetical protein compare
BPHYT_RS14500 -1.3 -2.7 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS02575 -1.3 -7.1 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS34025 -1.3 -1.9 hypothetical protein compare
BPHYT_RS18765 -1.3 -3.8 flagellar biosynthesis protein FliS compare
BPHYT_RS16430 -1.3 -9.7 cytochrome C compare
BPHYT_RS04335 -1.3 -0.9 membrane protein compare
BPHYT_RS22265 -1.3 -0.9 hypothetical protein compare
BPHYT_RS16945 -1.3 -2.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS01115 -1.3 -1.6 hypothetical protein compare
BPHYT_RS02560 -1.3 -5.4 glutathione synthetase compare
BPHYT_RS02540 -1.3 -1.2 hypothetical protein compare
BPHYT_RS17920 -1.3 -1.0 protein CyaY compare
BPHYT_RS01660 -1.3 -2.1 hypothetical protein compare
BPHYT_RS17265 -1.3 -1.0 cell division protein compare
BPHYT_RS14210 -1.3 -2.9 hydroxyacylglutathione hydrolase compare
BPHYT_RS25470 -1.3 -0.7 alkylhydroperoxidase compare
BPHYT_RS08975 -1.2 -3.1 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS13160 -1.2 -1.3 membrane protein compare
BPHYT_RS08965 -1.2 -2.0 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS04290 -1.2 -0.7 glycosyl transferase family 2 compare
BPHYT_RS04725 -1.2 -5.9 sulfite reductase compare
BPHYT_RS23430 -1.2 -1.7 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS13925 -1.2 -4.0 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
BPHYT_RS06600 -1.2 -1.2 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS18870 -1.2 -4.8 flagellar basal body rod protein FlgG compare
BPHYT_RS04720 -1.2 -4.9 transcriptional regulator compare
BPHYT_RS14490 -1.2 -7.1 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS09650 -1.2 -1.5 hypothetical protein compare
BPHYT_RS09500 -1.2 -4.4 glucose-6-phosphate isomerase compare
BPHYT_RS19985 -1.2 -0.8 CoA-transferase compare
BPHYT_RS13910 -1.2 -4.0 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
BPHYT_RS18760 -1.2 -1.4 flagellar biosynthesis protein FliT compare
BPHYT_RS08125 -1.2 -5.4 ATPase compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days across organisms