Experiment set34S264 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS04910 +4.1 9.4 phenylacetic acid degradation protein compare
BPHYT_RS27120 +2.6 7.1 hypothetical protein compare
BPHYT_RS28485 +2.5 3.7 GntR family transcriptional regulator compare
BPHYT_RS23515 +2.3 2.7 porin compare
BPHYT_RS00885 +2.3 1.4 chemotaxis protein CheY compare
BPHYT_RS31890 +2.3 4.3 transposase compare
BPHYT_RS10175 +2.2 3.0 membrane protein compare
BPHYT_RS05365 +2.1 3.5 3-ketoacyl-ACP reductase compare
BPHYT_RS06710 +2.0 2.9 hypothetical protein compare
BPHYT_RS34270 +2.0 1.5 LysR family transcriptional regulator compare
BPHYT_RS02765 +1.9 1.3 cytochrome BD oxidase subunit I compare
BPHYT_RS22250 +1.9 1.3 D-amino acid dehydrogenase compare
BPHYT_RS12290 +1.8 1.6 universal stress protein UspA compare
BPHYT_RS27895 +1.8 2.5 enoyl-CoA hydratase compare
BPHYT_RS12925 +1.8 1.9 exodeoxyribonuclease III compare
BPHYT_RS34500 +1.8 1.9 hypothetical protein compare
BPHYT_RS27865 +1.7 1.9 ATPase compare
BPHYT_RS11680 +1.6 3.8 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS32605 +1.6 3.3 hypothetical protein compare
BPHYT_RS06290 +1.6 4.5 hypothetical protein compare
BPHYT_RS31400 +1.6 1.7 methyl-accepting chemotaxis protein compare
BPHYT_RS33045 +1.5 2.8 response regulator receiver protein compare
BPHYT_RS28995 +1.5 1.2 histidine kinase compare
BPHYT_RS35735 +1.5 2.9 nitroreductase compare
BPHYT_RS32335 +1.5 1.4 AsnC family transcriptional regulator compare
BPHYT_RS06120 +1.5 5.9 heat-shock protein compare
BPHYT_RS13470 +1.5 1.3 arylsulfate sulfotransferase compare
BPHYT_RS10135 +1.5 1.9 hypothetical protein compare
BPHYT_RS08420 +1.5 4.8 histidine kinase compare
BPHYT_RS26010 +1.5 1.6 ABC transporter substrate-binding protein compare
BPHYT_RS02135 +1.4 1.5 glyoxylate reductase compare
BPHYT_RS24070 +1.4 2.4 hypothetical protein compare
BPHYT_RS01035 +1.4 1.1 cyanate hydratase compare
BPHYT_RS20010 +1.4 3.7 membrane protein compare
BPHYT_RS23955 +1.4 2.2 LysR family transcriptional regulator compare
BPHYT_RS09710 +1.4 1.5 undecaprenyl-phosphate glucose phosphotransferase compare
BPHYT_RS25405 +1.4 2.2 CoA-transferase compare
BPHYT_RS02010 +1.3 2.5 copper homeostasis protein CutC compare
BPHYT_RS25525 +1.3 4.5 hypothetical protein compare
BPHYT_RS20880 +1.3 1.7 polyketide cyclase compare
BPHYT_RS23540 +1.3 1.3 RND transporter compare
BPHYT_RS16470 +1.3 5.6 DeoR faimly transcriptional regulator compare
BPHYT_RS34470 +1.3 2.0 ABC transporter compare
BPHYT_RS04035 +1.3 2.2 transferase compare
BPHYT_RS12900 +1.3 2.1 transposase compare
BPHYT_RS35405 +1.3 1.9 hypothetical protein compare
BPHYT_RS30465 +1.3 1.5 short-chain dehydrogenase compare
BPHYT_RS27430 +1.2 2.1 LysR family transcriptional regulator compare
BPHYT_RS35985 +1.2 3.4 hypothetical protein compare
BPHYT_RS27030 +1.2 1.8 transcriptional regulator compare
BPHYT_RS03665 +1.2 1.6 hypothetical protein compare
BPHYT_RS27915 +1.2 2.2 major facilitator transporter compare
BPHYT_RS28065 +1.2 1.7 hypothetical protein compare
BPHYT_RS24580 +1.2 1.8 hypothetical protein compare
BPHYT_RS24105 +1.1 2.7 chloroperoxidase compare
BPHYT_RS00145 +1.1 1.4 hypothetical protein compare
BPHYT_RS30085 +1.1 1.3 hypothetical protein compare
BPHYT_RS23605 +1.1 2.1 hypothetical protein compare
BPHYT_RS04920 +1.1 1.0 aspartate 1-decarboxylase compare
BPHYT_RS20690 +1.1 0.9 ABC transporter permease compare
BPHYT_RS07760 +1.1 1.1 diguanylate phosphodiesterase compare
BPHYT_RS05780 +1.1 1.3 hypothetical protein compare
BPHYT_RS01210 +1.1 2.0 hypothetical protein compare
BPHYT_RS10995 +1.1 1.5 GntR family transcriptional regulator compare
BPHYT_RS27060 +1.1 1.5 photosystem reaction center subunit H compare
BPHYT_RS09315 +1.1 0.5 chemotaxis protein CheY compare
BPHYT_RS11205 +1.1 4.5 LacI family transcription regulator compare
BPHYT_RS10165 +1.1 0.9 transcriptional regulator compare
BPHYT_RS34775 +1.1 2.6 diguanylate cyclase compare
BPHYT_RS15550 +1.1 1.9 transcriptional regulator compare
BPHYT_RS17905 +1.1 1.9 fimbrial assembly family protein compare
BPHYT_RS24270 +1.1 1.6 C4-dicarboxylate ABC transporter substrate-binding protein compare
BPHYT_RS20840 +1.1 1.5 beta-lactamase compare
BPHYT_RS09860 +1.0 1.0 pilus assembly protein PilP compare
BPHYT_RS31620 +1.0 1.6 mandelate racemase compare
BPHYT_RS05655 +1.0 2.5 membrane protein compare
BPHYT_RS03875 +1.0 1.9 dehydrogenase compare
BPHYT_RS07385 +1.0 1.7 glycosyl transferase family 1 compare
BPHYT_RS23250 +1.0 1.1 hypothetical protein compare
BPHYT_RS19475 +1.0 2.2 ABC transporter permease compare
BPHYT_RS31755 +1.0 1.3 amino acid ABC transporter ATPase compare
BPHYT_RS20850 +1.0 2.1 multidrug DMT transporter permease compare
BPHYT_RS10410 +1.0 1.4 monooxygenase compare
BPHYT_RS31440 +1.0 0.8 hypothetical protein compare
BPHYT_RS35430 +1.0 1.4 DSBA oxidoreductase compare
BPHYT_RS23035 +1.0 2.6 hypothetical protein compare
BPHYT_RS10105 +1.0 1.8 hypothetical protein compare
BPHYT_RS07840 +1.0 1.6 muconate cycloisomerase compare
BPHYT_RS16095 +1.0 1.7 ABC transporter for D-Sorbitol, ATPase component (from data) compare
BPHYT_RS04005 +1.0 1.4 GDP-L-fucose synthase compare
BPHYT_RS02760 +1.0 0.8 cytochrome BD oxidase subunit II compare
BPHYT_RS16120 +1.0 1.6 sorbitol dehydrogenase, D-fructose forming (EC 1.1.1.14) (from data) compare
BPHYT_RS27545 +1.0 1.2 histidine kinase compare
BPHYT_RS24925 +1.0 1.2 cytochrome O ubiquinol oxidase compare
BPHYT_RS26355 +1.0 1.3 hypothetical protein compare
BPHYT_RS19895 +1.0 2.0 rod shape-determining protein RodA compare
BPHYT_RS36140 +1.0 2.4 hypothetical protein compare
BPHYT_RS26960 +1.0 2.8 LysR family transcriptional regulator compare
BPHYT_RS02195 +1.0 1.1 hypothetical protein compare
BPHYT_RS07925 +1.0 1.7 glutamine amidotransferase compare
BPHYT_RS23175 +1.0 2.7 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase compare
BPHYT_RS31410 +0.9 1.3 D-amino acid oxidase compare
BPHYT_RS35665 +0.9 1.3 ABC transporter permease compare
BPHYT_RS20790 +0.9 1.7 TetR family transcriptional regulator compare
BPHYT_RS17240 +0.9 0.9 cell division protein FtsW compare
BPHYT_RS27690 +0.9 2.5 carbamate kinase compare
BPHYT_RS30605 +0.9 4.6 MlrC domain-containing protein compare
BPHYT_RS28145 +0.9 2.0 diguanylate cyclase compare
BPHYT_RS11060 +0.9 1.8 4-hydroxybenzoate 3-monooxygenase compare
BPHYT_RS23725 +0.9 2.4 hypothetical protein compare
BPHYT_RS04670 +0.9 2.3 sulfurtransferase compare
BPHYT_RS11195 +0.9 1.3 hydratase compare
BPHYT_RS02755 +0.9 0.8 cyd operon protein YbgT compare
BPHYT_RS11530 +0.9 0.7 5-hydroxyisourate hydrolase compare
BPHYT_RS27305 +0.9 1.3 hypothetical protein compare
BPHYT_RS20085 +0.9 1.0 mannosyltransferase compare
BPHYT_RS06335 +0.9 1.1 CopG family transcriptional regulator compare
BPHYT_RS33825 +0.9 1.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS25785 +0.9 1.7 sugar ABC transporter permease compare
BPHYT_RS34920 +0.9 1.0 IclR family transcriptional regulator compare
BPHYT_RS00740 +0.9 1.9 hypothetical protein compare
BPHYT_RS18515 +0.9 1.6 hypothetical protein compare
BPHYT_RS22530 +0.9 1.7 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS26975 +0.9 1.0 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS13035 +0.9 1.8 hypothetical protein compare
BPHYT_RS33340 +0.9 2.6 hypothetical protein compare
BPHYT_RS26900 +0.9 1.8 isoprenylcysteine carboxyl methyltransferase compare
BPHYT_RS06470 +0.9 0.9 membrane protein compare
BPHYT_RS19955 +0.9 1.3 LysR family transcriptional regulator compare
BPHYT_RS35560 +0.8 2.1 endoribonuclease L-PSP compare
BPHYT_RS04760 +0.8 1.8 3-keto-5-aminohexanoate cleavage protein compare
BPHYT_RS05220 +0.8 1.6 S-adenosyl-L-methionine (SAM)-dependent methyltransferase PhcB compare
BPHYT_RS26510 +0.8 1.3 transcriptional regulator compare
BPHYT_RS20610 +0.8 1.5 LysR family transcriptional regulator compare
BPHYT_RS28535 +0.8 0.8 response regulator receiver compare
BPHYT_RS29585 +0.8 0.9 hypothetical protein compare
BPHYT_RS24385 +0.8 3.1 membrane protein compare
BPHYT_RS11200 +0.8 1.9 membrane protein compare
BPHYT_RS21870 +0.8 2.1 hypothetical protein compare
BPHYT_RS07130 +0.8 1.2 biopolymer transporter ExbD compare
BPHYT_RS33450 +0.8 1.1 LysR family transcriptional regulator compare
BPHYT_RS10260 +0.8 1.2 hypothetical protein compare
BPHYT_RS27450 +0.8 1.1 alpha/beta hydrolase compare
BPHYT_RS32815 +0.8 1.6 sugar ABC transporter compare
BPHYT_RS09890 +0.8 1.2 choline dehydrogenase compare
BPHYT_RS11150 +0.8 1.7 LysR family transcriptional regulator compare
BPHYT_RS26815 +0.8 2.7 1-aminocyclopropane-1-carboxylate deaminase compare
BPHYT_RS27890 +0.8 0.8 hypothetical protein compare
BPHYT_RS27270 +0.8 1.9 photosystem reaction center subunit H compare
BPHYT_RS05300 +0.8 0.7 polyketide cyclase compare
BPHYT_RS07650 +0.8 2.2 sulfurtransferase compare
BPHYT_RS33235 +0.8 1.5 potassium transporter Kup compare
BPHYT_RS22740 +0.8 1.1 ABC transporter permease compare
BPHYT_RS08615 +0.8 1.1 hypothetical protein compare
BPHYT_RS27295 +0.8 0.8 hypothetical protein compare
BPHYT_RS08210 +0.8 2.0 membrane protein compare
BPHYT_RS04170 +0.8 2.0 hypothetical protein compare
BPHYT_RS14180 +0.8 1.1 membrane protein compare
BPHYT_RS23940 +0.8 1.2 GntR family transcriptional regulator compare
BPHYT_RS13550 +0.8 1.9 acyl-CoA dehydrogenase compare
BPHYT_RS27720 +0.8 0.9 hypothetical protein compare
BPHYT_RS10940 +0.8 3.3 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase compare
BPHYT_RS04120 +0.8 1.6 protein tyrosine kinase compare
BPHYT_RS30020 +0.8 1.4 arsenic transporter compare
BPHYT_RS02985 +0.8 1.2 MaoC family dehydratase compare
BPHYT_RS08150 +0.8 0.9 membrane protein compare
BPHYT_RS10765 +0.8 1.1 amidase compare
BPHYT_RS29430 +0.8 1.2 major facilitator transporter compare
BPHYT_RS11260 +0.8 1.5 LysR family transcriptional regulator compare
BPHYT_RS32495 +0.8 1.5 ABC transporter compare
BPHYT_RS26855 +0.8 0.6 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS20835 +0.8 1.1 pyridoxal 4-dehydrogenase compare
BPHYT_RS34620 +0.8 1.0 hypothetical protein compare
BPHYT_RS09360 +0.8 2.1 short-chain dehydrogenase/reductase SDR compare
BPHYT_RS21825 +0.8 1.4 chemotaxis protein CheY compare
BPHYT_RS11750 +0.8 1.4 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS21690 +0.8 1.6 cobalt chelatase compare
BPHYT_RS03655 +0.8 1.0 membrane protein compare
BPHYT_RS13005 +0.8 2.4 membrane protein compare
BPHYT_RS26470 +0.7 0.8 MFS transporter compare
BPHYT_RS06455 +0.7 1.6 potassium-transporting ATPase C chain compare
BPHYT_RS30325 +0.7 2.3 4-oxalomesaconate hydratase compare
BPHYT_RS19020 +0.7 2.5 transcriptional regulator compare
BPHYT_RS07595 +0.7 1.3 membrane protein compare
BPHYT_RS01750 +0.7 2.5 von Willebrand factor A compare
BPHYT_RS24255 +0.7 0.7 hypothetical protein compare
BPHYT_RS30135 +0.7 1.2 SAM-dependent methyltransferase compare
BPHYT_RS05940 +0.7 1.4 membrane protein compare
BPHYT_RS13570 +0.7 2.5 cytochrome P450 compare
BPHYT_RS23535 +0.7 1.5 ABC transporter substrate-binding protein compare
BPHYT_RS20070 +0.7 1.2 hypothetical protein compare
BPHYT_RS34295 +0.7 0.8 fimbrial protein compare
BPHYT_RS11495 +0.7 1.0 membrane protein compare
BPHYT_RS06195 +0.7 1.3 membrane protein compare
BPHYT_RS11765 +0.7 0.8 polyamine ABC transporter permease compare
BPHYT_RS06445 +0.7 1.3 ATPase compare
BPHYT_RS20165 +0.7 1.4 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BPHYT_RS14295 +0.7 1.5 GumN family protein compare
BPHYT_RS31345 +0.7 1.4 malonate transporter compare
BPHYT_RS24170 +0.7 1.8 gluconolactonase compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Arabidopsis_thaliana_FLS2; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days across organisms