Experiment set34S263 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS29720 +6.2 2.7 molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
BPHYT_RS23140 +4.2 1.3 putrescine/spermidine ABC transporter permease compare
BPHYT_RS20425 +3.9 6.7 hypothetical protein compare
BPHYT_RS11970 +3.7 7.3 cupin compare
BPHYT_RS20380 +3.5 7.5 LysR family transcriptional regulator compare
BPHYT_RS22840 +3.4 11.5 motility protein B compare
BPHYT_RS03015 +3.3 4.4 aldolase compare
BPHYT_RS00115 +3.3 2.4 acetaldehyde dehydrogenase compare
BPHYT_RS02600 +3.2 7.6 glutaredoxin compare
BPHYT_RS20090 +3.1 12.7 nitrate ABC transporter substrate-binding protein compare
BPHYT_RS05570 +3.0 8.7 hypothetical protein compare
BPHYT_RS24740 +2.9 3.8 RNA polymerase subunit sigma-24 compare
BPHYT_RS11890 +2.8 10.8 hypothetical protein compare
BPHYT_RS26575 +2.8 1.4 hypothetical protein compare
BPHYT_RS20185 +2.7 1.6 sugar transferase compare
BPHYT_RS24350 +2.7 2.7 hypothetical protein compare
BPHYT_RS07920 +2.6 6.3 hypothetical protein compare
BPHYT_RS34530 +2.5 1.2 LysR family transcriptional regulator compare
BPHYT_RS12380 +2.4 1.6 ABC transporter permease compare
BPHYT_RS28470 +2.4 2.1 hypothetical protein compare
BPHYT_RS18600 +2.4 4.8 glutathione S-transferase compare
BPHYT_RS26770 +2.4 2.2 histidine kinase compare
BPHYT_RS11265 +2.4 5.2 hypothetical protein compare
BPHYT_RS10675 +2.3 5.3 muconate cycloisomerase compare
BPHYT_RS02100 +2.3 3.7 AsnC family transcriptional regulator compare
BPHYT_RS11260 +2.2 2.7 LysR family transcriptional regulator compare
BPHYT_RS22215 +2.1 1.3 hypothetical protein compare
BPHYT_RS21005 +2.1 1.6 asparaginase compare
BPHYT_RS09545 +2.0 1.6 peptide methionine sulfoxide reductase compare
BPHYT_RS18835 +2.0 2.5 flagellar biosynthesis protein FliR compare
BPHYT_RS11220 +2.0 2.5 LacI family transcriptional regulator compare
BPHYT_RS29175 +2.0 2.9 ABC transporter ATP-binding protein compare
BPHYT_RS10205 +2.0 1.8 D-lactate dehydrogenase compare
BPHYT_RS14005 +2.0 2.4 ABC transporter compare
BPHYT_RS20590 +1.9 2.2 methionine sulfoxide reductase A compare
BPHYT_RS21455 +1.9 1.3 type 11 methyltransferase compare
BPHYT_RS16090 +1.9 1.5 hypothetical protein compare
BPHYT_RS23960 +1.9 2.1 sugar ABC transporter compare
BPHYT_RS24495 +1.9 3.9 transcriptional regulator compare
BPHYT_RS12400 +1.8 2.7 amidohydrolase 2 compare
BPHYT_RS30505 +1.8 4.1 ABC transporter permease compare
BPHYT_RS31515 +1.8 1.7 agmatinase compare
BPHYT_RS07265 +1.8 5.4 3-hydroxyanthranilate 3,4-dioxygenase compare
BPHYT_RS20995 +1.8 1.4 NUDIX hydrolase compare
BPHYT_RS21585 +1.8 1.4 short-chain dehydrogenase compare
BPHYT_RS16290 +1.7 1.8 hypothetical protein compare
BPHYT_RS24625 +1.7 2.7 hypothetical protein compare
BPHYT_RS33585 +1.7 3.6 exodeoxyribonuclease VII small subunit compare
BPHYT_RS35735 +1.7 2.6 nitroreductase compare
BPHYT_RS26330 +1.7 1.5 hypothetical protein compare
BPHYT_RS08615 +1.7 2.4 hypothetical protein compare
BPHYT_RS01425 +1.7 1.9 3-phosphoglycerate dehydrogenase compare
BPHYT_RS00350 +1.7 1.7 hypothetical protein compare
BPHYT_RS32860 +1.7 2.0 hypothetical protein compare
BPHYT_RS33260 +1.6 3.8 hypothetical protein compare
BPHYT_RS35730 +1.6 2.5 hypothetical protein compare
BPHYT_RS34155 +1.6 3.0 3-hydroxybutyryl-CoA dehydrogenase compare
BPHYT_RS29105 +1.6 1.4 class V aminotransferase compare
BPHYT_RS26015 +1.6 2.4 rod shape-determining protein MreB compare
BPHYT_RS31345 +1.6 1.8 malonate transporter compare
BPHYT_RS27655 +1.6 2.1 potassium transporter compare
BPHYT_RS25445 +1.5 3.4 alkyl hydroperoxide reductase compare
BPHYT_RS28805 +1.5 3.4 glyoxalase compare
BPHYT_RS35850 +1.5 2.5 hypothetical protein compare
BPHYT_RS16470 +1.5 8.2 DeoR faimly transcriptional regulator compare
BPHYT_RS08665 +1.5 1.8 hypothetical protein compare
BPHYT_RS26705 +1.5 2.7 hypothetical protein compare
BPHYT_RS00725 +1.5 5.4 hypothetical protein compare
BPHYT_RS07845 +1.5 1.2 LysR family transcriptional regulator compare
BPHYT_RS22765 +1.5 1.1 beta-galactosidase compare
BPHYT_RS36250 +1.4 1.0 hypothetical protein compare
BPHYT_RS33365 +1.4 1.5 PAS sensor protein compare
BPHYT_RS27295 +1.4 1.5 hypothetical protein compare
BPHYT_RS01725 +1.4 1.0 hypothetical protein compare
BPHYT_RS27165 +1.4 2.6 4-carboxymuconolactone decarboxylase compare
BPHYT_RS26075 +1.4 1.4 ABC transporter permease compare
BPHYT_RS08595 +1.4 1.3 multidrug transporter compare
BPHYT_RS06605 +1.4 1.2 NAD(P)H quinone oxidoreductase compare
BPHYT_RS25375 +1.3 1.7 lipid-transfer protein compare
BPHYT_RS04990 +1.3 1.6 hypothetical protein compare
BPHYT_RS33380 +1.3 1.1 2-nitropropane dioxygenase compare
BPHYT_RS05405 +1.3 1.5 GCN5 family acetyltransferase compare
BPHYT_RS28430 +1.3 1.1 histidine kinase compare
BPHYT_RS32210 +1.3 1.8 hypothetical protein compare
BPHYT_RS07230 +1.3 1.7 LysR family transcriptional regulator compare
BPHYT_RS28065 +1.3 1.3 hypothetical protein compare
BPHYT_RS30290 +1.3 2.9 MFS transporter compare
BPHYT_RS11895 +1.3 1.6 peroxiredoxin compare
BPHYT_RS15180 +1.3 1.9 membrane protein compare
BPHYT_RS05655 +1.3 3.3 membrane protein compare
BPHYT_RS34185 +1.3 2.3 cold-shock protein compare
BPHYT_RS25370 +1.3 2.6 acyl-CoA dehydrogenase compare
BPHYT_RS20350 +1.2 1.5 citrate transporter compare
BPHYT_RS03785 +1.2 1.4 IclR family transcriptional regulator compare
BPHYT_RS02995 +1.2 1.9 2-methylcitrate dehydratase compare
BPHYT_RS28960 +1.2 1.4 histidine kinase compare
BPHYT_RS21615 +1.2 2.9 FMN-dependent NADH-azoreductase compare
BPHYT_RS25335 +1.2 1.1 hypothetical protein compare
BPHYT_RS27985 +1.2 1.7 LacI family transcriptional regulator compare
BPHYT_RS34740 +1.2 1.3 hypothetical protein compare
BPHYT_RS25045 +1.2 2.7 LysR family transcriptional regulator compare
BPHYT_RS21030 +1.2 1.5 ABC transporter ATP-binding protein compare
BPHYT_RS11275 +1.2 2.6 hypothetical protein compare
BPHYT_RS04315 +1.2 1.5 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS30635 +1.2 3.6 D-aminopeptidase compare
BPHYT_RS08985 +1.2 1.7 Rrf2 family transcriptional regulator compare
BPHYT_RS04715 +1.2 1.4 branched-chain amino acid ABC transporter substrate-binding protein compare
BPHYT_RS19935 +1.2 1.2 protein serine/threonine phosphatase compare
BPHYT_RS20520 +1.2 1.6 transcriptional regulator compare
BPHYT_RS15135 +1.2 1.3 3-ketoacyl-ACP reductase compare
BPHYT_RS26870 +1.2 1.0 cytochrome C551 compare
BPHYT_RS19955 +1.2 1.0 LysR family transcriptional regulator compare
BPHYT_RS07110 +1.2 1.7 LysR family transcriptional regulator compare
BPHYT_RS03255 +1.1 2.0 glutathione S-transferase compare
BPHYT_RS28340 +1.1 2.3 indole acetimide hydrolase compare
BPHYT_RS34670 +1.1 4.1 integrase compare
BPHYT_RS22180 +1.1 3.1 hypothetical protein compare
BPHYT_RS23430 +1.1 2.4 bifunctional D-altronate/D-mannonate dehydratase compare
BPHYT_RS31205 +1.1 2.3 peptide ABC transporter ATP-binding protein compare
BPHYT_RS24580 +1.1 1.5 hypothetical protein compare
BPHYT_RS00885 +1.1 1.5 chemotaxis protein CheY compare
BPHYT_RS20285 +1.1 1.9 MFS transporter compare
BPHYT_RS11205 +1.1 3.6 LacI family transcription regulator compare
BPHYT_RS28860 +1.1 1.1 haloacid dehalogenase compare
BPHYT_RS35060 +1.1 2.7 glycosyl transferase compare
BPHYT_RS28000 +1.1 1.7 permease compare
BPHYT_RS32200 +1.1 3.3 lytic transglycosylase compare
BPHYT_RS19785 +1.1 1.9 chemotaxis protein CheY compare
BPHYT_RS08170 +1.1 2.0 pilus assembly protein CpaB compare
BPHYT_RS11635 +1.1 0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS30460 +1.1 3.6 glycerate dehydrogenase compare
BPHYT_RS24650 +1.1 2.5 polar amino acid ABC transporter permease compare
BPHYT_RS02395 +1.1 3.2 ABC transporter compare
BPHYT_RS00295 +1.1 1.3 hypothetical protein compare
BPHYT_RS24335 +1.1 2.0 toxin HipA compare
BPHYT_RS25165 +1.1 0.9 HTH-type transcriptional regulator BetI compare
BPHYT_RS27865 +1.1 1.4 ATPase compare
BPHYT_RS07005 +1.1 3.2 membrane protein compare
BPHYT_RS27445 +1.1 1.4 hypothetical protein compare
BPHYT_RS15115 +1.1 1.9 excinuclease ABC subunit A compare
BPHYT_RS30860 +1.1 1.9 sugar ABC transporter permease compare
BPHYT_RS31190 +1.1 2.1 ABC transporter permease compare
BPHYT_RS28725 +1.1 2.8 oxidoreductase compare
BPHYT_RS07105 +1.1 1.5 CoA transferase compare
BPHYT_RS10685 +1.1 1.4 LysR family transcriptional regulator compare
BPHYT_RS02010 +1.0 1.2 copper homeostasis protein CutC compare
BPHYT_RS32525 +1.0 1.6 hypothetical protein compare
BPHYT_RS32130 +1.0 1.2 hypothetical protein compare
BPHYT_RS05475 +1.0 2.1 hypothetical protein compare
BPHYT_RS19780 +1.0 1.9 diguanylate cyclase compare
BPHYT_RS32395 +1.0 1.0 hypothetical protein compare
BPHYT_RS07130 +1.0 1.3 biopolymer transporter ExbD compare
BPHYT_RS34070 +1.0 1.5 histidine kinase compare
BPHYT_RS31470 +1.0 1.0 NAD(P)H dehydrogenase (quinone) compare
BPHYT_RS29215 +1.0 1.6 porin compare
BPHYT_RS23990 +1.0 1.2 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS27250 +1.0 1.9 NAD-dependent epimerase/dehydratase compare
BPHYT_RS22120 +1.0 1.7 sulfate transporter compare
BPHYT_RS25005 +1.0 1.3 FMN reductase compare
BPHYT_RS29475 +1.0 1.9 carbon-phosphorus lyase complex subunit PhnJ compare
BPHYT_RS09810 +1.0 1.4 hypothetical protein compare
BPHYT_RS30510 +1.0 1.7 aldehyde dehydrogenase compare
BPHYT_RS15140 +1.0 1.4 beta-hydroxyacyl-ACP dehydratase compare
BPHYT_RS34560 +1.0 2.1 hypothetical protein compare
BPHYT_RS30400 +1.0 1.4 amidohydrolase compare
BPHYT_RS19805 +1.0 4.0 chemotaxis protein CheW compare
BPHYT_RS15110 +1.0 1.8 methyltransferase compare
BPHYT_RS35160 +1.0 2.7 PKHD-type hydroxylase compare
BPHYT_RS23965 +1.0 2.7 iron ABC transporter permease compare
BPHYT_RS25170 +1.0 2.1 aldehyde dismutase compare
BPHYT_RS27680 +1.0 0.9 arginine deiminase compare
BPHYT_RS11790 +1.0 1.7 fumarylacetoacetase compare
BPHYT_RS04170 +1.0 1.4 hypothetical protein compare
BPHYT_RS35225 +1.0 2.8 RNA polymerase subunit sigma-24 compare
BPHYT_RS35380 +0.9 2.3 sugar MFS transporter compare
BPHYT_RS36320 +0.9 2.5 type IV secretion system family protein compare
BPHYT_RS36385 +0.9 0.8 TetR family transcriptional regulator compare
BPHYT_RS20370 +0.9 1.2 MFS transporter compare
BPHYT_RS27580 +0.9 1.1 F0F1 ATP synthase subunit alpha compare
BPHYT_RS31545 +0.9 1.0 membrane protein compare
BPHYT_RS28535 +0.9 0.8 response regulator receiver compare
BPHYT_RS10475 +0.9 1.5 mammalian cell entry protein compare
BPHYT_RS33165 +0.9 1.9 AraC family transcriptional regulator compare
BPHYT_RS20900 +0.9 1.7 phytanoyl-CoA dioxygenase compare
BPHYT_RS05610 +0.9 5.5 DNA-cytosine methyltransferase compare
BPHYT_RS16700 +0.9 1.9 ABC transporter compare
BPHYT_RS33385 +0.9 1.3 major facilitator superfamily protein compare
BPHYT_RS26005 +0.9 1.7 MarR family transcriptional regulator compare
BPHYT_RS05365 +0.9 1.1 3-ketoacyl-ACP reductase compare
BPHYT_RS29695 +0.9 1.4 hypothetical protein compare
BPHYT_RS02740 +0.9 2.0 N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) (from data) compare
BPHYT_RS07410 +0.9 1.3 glucosamine--fructose-6-phosphate aminotransferase compare
BPHYT_RS30685 +0.9 1.9 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS28415 +0.9 2.5 hypothetical protein compare
BPHYT_RS06515 +0.9 3.3 GDP-mannose-dependent alpha-mannosyltransferase compare
BPHYT_RS28685 +0.9 1.7 GntR family transcriptional regulator compare
BPHYT_RS10435 +0.9 2.0 ThiJ/PfpI domain-containing protein compare
BPHYT_RS12855 +0.9 1.5 hypothetical protein compare
BPHYT_RS26525 +0.9 1.1 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS36040 +0.9 1.3 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_1.5%agar; Collection=outgrowth_LB; Time=7_days across organisms