Experiment set34S262 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -7.3 -5.0 phosphoglycerate kinase compare
BPHYT_RS02690 -6.5 -10.0 protoheme IX farnesyltransferase compare
BPHYT_RS12845 -5.8 -17.4 ATPase compare
BPHYT_RS06550 -5.6 -3.4 acetolactate synthase compare
BPHYT_RS13705 -5.5 -3.8 chorismate synthase compare
BPHYT_RS15915 -5.1 -7.8 ornithine carbamoyltransferase compare
BPHYT_RS02610 -4.8 -6.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS06400 -4.8 -6.9 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS02665 -4.8 -12.6 MFS transporter compare
BPHYT_RS33880 -4.7 -11.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17380 -4.6 -12.3 ribulose-phosphate 3-epimerase compare
BPHYT_RS33875 -4.6 -11.4 tryptophan synthase subunit alpha compare
BPHYT_RS14275 -4.5 -2.8 hypothetical protein compare
BPHYT_RS35885 -4.5 -5.5 hypothetical protein compare
BPHYT_RS04965 -4.4 -9.3 ATP-binding protein compare
BPHYT_RS06070 -4.4 -12.3 cytochrome C compare
BPHYT_RS17890 -4.4 -2.6 shikimate kinase compare
BPHYT_RS17885 -4.3 -5.1 3-dehydroquinate synthase compare
BPHYT_RS05155 -4.3 -6.3 acetyltransferase GCN5 compare
BPHYT_RS16835 -4.3 -6.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06065 -4.2 -10.8 cytochrome C compare
BPHYT_RS02640 -4.2 -11.0 cytochrome C oxidase compare
BPHYT_RS15920 -4.2 -12.9 argininosuccinate synthase compare
BPHYT_RS14865 -4.1 -2.5 UDP-glucose 6-dehydrogenase compare
BPHYT_RS02685 -4.1 -12.2 cytochrome C oxidase subunit I compare
BPHYT_RS04955 -4.1 -2.5 methionyl-tRNA synthetase compare
BPHYT_RS06530 -4.1 -2.0 membrane protein compare
BPHYT_RS17945 -4.1 -2.5 cytochrome C biogenesis protein compare
BPHYT_RS17400 -4.0 -10.8 anthranilate phosphoribosyltransferase compare
BPHYT_RS03150 -3.9 -12.7 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS08955 -3.7 -6.2 homoserine dehydrogenase compare
BPHYT_RS12990 -3.7 -2.6 iron transporter compare
BPHYT_RS04725 -3.7 -9.8 sulfite reductase compare
BPHYT_RS33900 -3.7 -13.4 3-isopropylmalate dehydrogenase compare
BPHYT_RS02590 -3.7 -8.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS33915 -3.6 -10.8 isopropylmalate isomerase compare
BPHYT_RS06610 -3.6 -1.8 triosephosphate isomerase compare
BPHYT_RS16245 -3.6 -3.5 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS02570 -3.6 -5.8 phosphocarrier protein HPr compare
BPHYT_RS18320 -3.6 -6.4 orotate phosphoribosyltransferase compare
BPHYT_RS16345 -3.5 -4.1 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS14845 -3.4 -2.3 cysteine synthase compare
BPHYT_RS12150 -3.4 -14.4 PII uridylyl-transferase compare
BPHYT_RS08960 -3.4 -2.0 threonine synthase compare
BPHYT_RS33865 -3.4 -8.1 tryptophan synthase alpha chain compare
BPHYT_RS14895 -3.4 -3.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS02525 -3.3 -6.6 membrane protein compare
BPHYT_RS01595 -3.3 -11.8 homoserine O-acetyltransferase compare
BPHYT_RS14910 -3.2 -14.8 chorismate mutase compare
BPHYT_RS16710 -3.2 -1.1 LysR family transcriptional regulator compare
BPHYT_RS06405 -3.2 -6.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS06555 -3.2 -12.4 ketol-acid reductoisomerase compare
BPHYT_RS06545 -3.2 -13.5 acetolactate synthase compare
BPHYT_RS14400 -3.1 -4.7 anti-sigma factor compare
BPHYT_RS17095 -3.1 -3.0 proline--tRNA ligase compare
BPHYT_RS02695 -3.1 -8.6 photosynthetic protein synthase I compare
BPHYT_RS33920 -3.0 -5.6 type II citrate synthase compare
BPHYT_RS06975 -3.0 -2.7 glutamate racemase compare
BPHYT_RS33645 -3.0 -3.6 homoserine kinase compare
BPHYT_RS33840 -2.9 -6.5 amidophosphoribosyltransferase compare
BPHYT_RS06900 -2.9 -5.7 aspartate aminotransferase compare
BPHYT_RS13885 -2.9 -2.5 myo-inositol 2-dehydrogenase compare
BPHYT_RS33835 -2.9 -11.9 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS04720 -2.9 -11.6 transcriptional regulator compare
BPHYT_RS22190 -2.9 -3.0 nucleoid-structuring protein H-NS compare
BPHYT_RS18255 -2.9 -2.4 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS16435 -2.9 -16.5 alcohol dehydrogenase compare
BPHYT_RS17390 -2.8 -15.6 anthranilate synthase subunit I compare
BPHYT_RS15710 -2.8 -1.7 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS12465 -2.8 -2.6 inositol monophosphatase compare
BPHYT_RS04080 -2.8 -4.8 chloride channel protein compare
BPHYT_RS12985 -2.8 -1.9 amino acid acetyltransferase compare
BPHYT_RS16430 -2.8 -19.2 cytochrome C compare
BPHYT_RS17520 -2.7 -4.8 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS11390 -2.7 -11.9 penicillin-binding protein 1A compare
BPHYT_RS17395 -2.7 -3.0 anthranilate synthase subunit II compare
BPHYT_RS33580 -2.7 -3.7 geranyltranstransferase compare
BPHYT_RS16905 -2.6 -4.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS12955 -2.6 -6.5 damage-inducible protein compare
BPHYT_RS16210 -2.6 -5.1 peptidase compare
BPHYT_RS02885 -2.6 -11.6 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS19325 -2.5 -3.1 glycine cleavage system H protein compare
BPHYT_RS36275 -2.5 -2.4 hypothetical protein compare
BPHYT_RS14190 -2.5 -3.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS14855 -2.5 -2.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS12725 -2.5 -15.2 regulator compare
BPHYT_RS02650 -2.4 -2.2 membrane protein compare
BPHYT_RS02575 -2.4 -12.3 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS06375 -2.4 -5.4 ribonuclease compare
BPHYT_RS17405 -2.4 -1.4 indole-3-glycerol phosphate synthase compare
BPHYT_RS13900 -2.4 -2.8 ATPase compare
BPHYT_RS22360 -2.4 -3.6 response regulator receiver compare
BPHYT_RS02860 -2.4 -0.8 membrane protein compare
BPHYT_RS13605 -2.4 -1.2 tRNA-Pro compare
BPHYT_RS14915 -2.4 -8.4 phosphoserine aminotransferase compare
BPHYT_RS17265 -2.4 -1.6 cell division protein compare
BPHYT_RS24500 -2.3 -2.0 histidine kinase compare
BPHYT_RS08945 -2.3 -6.8 hypothetical protein compare
BPHYT_RS21905 -2.3 -1.4 IclR family transcriptional regulator compare
BPHYT_RS17760 -2.3 -5.0 ABC transporter permease compare
BPHYT_RS08850 -2.3 -1.5 transcriptional regulator compare
BPHYT_RS13245 -2.3 -6.9 hypothetical protein compare
BPHYT_RS06155 -2.3 -6.5 DEAD/DEAH box helicase compare
BPHYT_RS09330 -2.3 -11.5 phytoene synthase compare
BPHYT_RS16340 -2.3 -4.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS02635 -2.3 -6.4 membrane protein compare
BPHYT_RS34780 -2.3 -3.7 phytoene synthase compare
BPHYT_RS23230 -2.2 -1.4 histidine kinase compare
BPHYT_RS24315 -2.2 -1.5 phosphoribosyltransferase compare
BPHYT_RS17765 -2.2 -6.2 toluene ABC transporter ATP-binding protein compare
BPHYT_RS25870 -2.1 -1.3 type III secretion system ATPase compare
BPHYT_RS09620 -2.1 -3.4 aminodeoxychorismate lyase compare
BPHYT_RS04730 -2.1 -4.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS19680 -2.1 -11.8 glutamate--cysteine ligase compare
BPHYT_RS36385 -2.1 -1.2 TetR family transcriptional regulator compare
BPHYT_RS08125 -2.1 -10.9 ATPase compare
BPHYT_RS03400 -2.0 -1.0 ATP-dependent DNA helicase RecG compare
BPHYT_RS09480 -2.0 -1.3 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS06075 -2.0 -7.6 hypothetical protein compare
BPHYT_RS17075 -2.0 -3.7 ABC transporter permease compare
BPHYT_RS04285 -2.0 -1.9 rhamnosyltransferase compare
BPHYT_RS17690 -1.9 -8.2 imidazole glycerol phosphate synthase compare
BPHYT_RS18910 -1.9 -1.5 FlgN compare
BPHYT_RS16665 -1.9 -2.0 peroxiredoxin compare
BPHYT_RS04740 -1.9 -7.2 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS02045 -1.9 -4.6 Fructokinase (EC 2.7.1.4) (from data) compare
BPHYT_RS17685 -1.9 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS06535 -1.9 -2.1 membrane protein compare
BPHYT_RS04745 -1.9 -4.8 sulfate adenylyltransferase compare
BPHYT_RS17855 -1.8 -12.4 glutamate synthase compare
BPHYT_RS17715 -1.8 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS15075 -1.8 -1.5 dihydrokaempferol 4-reductase compare
BPHYT_RS16065 -1.8 -1.2 LacI family transcriptional regulator compare
BPHYT_RS15620 -1.8 -2.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12615 -1.8 -1.4 dihydrodipicolinate synthase compare
BPHYT_RS24285 -1.7 -1.3 TetR family transcriptional regulator compare
BPHYT_RS15415 -1.7 -8.2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS03570 -1.7 -4.8 heat-inducible transcription repressor HrcA compare
BPHYT_RS02865 -1.7 -1.1 hypothetical protein compare
BPHYT_RS18260 -1.7 -7.0 phenylacetic acid degradation protein compare
BPHYT_RS03725 -1.6 -0.9 serine hydroxymethyltransferase compare
BPHYT_RS13920 -1.6 -6.4 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
BPHYT_RS17680 -1.6 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS02680 -1.6 -7.1 cytochrome C oxidase subunit I compare
BPHYT_RS09515 -1.6 -1.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS13390 -1.6 -1.2 IclR family transcriptional regulator compare
BPHYT_RS25135 -1.6 -1.8 hypothetical protein compare
BPHYT_RS12530 -1.6 -6.5 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17675 -1.6 -2.4 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33905 -1.5 -1.7 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS02975 -1.5 -1.0 membrane protein compare
BPHYT_RS09160 -1.5 -3.5 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS17050 -1.5 -2.4 hypothetical protein compare
BPHYT_RS08410 -1.5 -1.3 dehydrogenase compare
BPHYT_RS09145 -1.5 -7.7 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS16990 -1.5 -5.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS20790 -1.5 -1.7 TetR family transcriptional regulator compare
BPHYT_RS03110 -1.5 -1.9 MarR family transcriptional regulator compare
BPHYT_RS18705 -1.5 -1.5 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS22265 -1.5 -0.8 hypothetical protein compare
BPHYT_RS15950 -1.4 -5.1 tyrosine recombinase XerD compare
BPHYT_RS29920 -1.4 -1.1 hypothetical protein compare
BPHYT_RS13910 -1.4 -3.8 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
BPHYT_RS23910 -1.4 -0.8 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS01505 -1.4 -1.6 7-cyano-7-deazaguanine reductase compare
BPHYT_RS12055 -1.4 -9.4 phosphoenolpyruvate synthase compare
BPHYT_RS06350 -1.4 -2.0 chemotaxis protein CheY compare
BPHYT_RS14280 -1.4 -5.2 membrane protein compare
BPHYT_RS27570 -1.4 -2.1 universal stress protein UspA compare
BPHYT_RS18970 -1.4 -8.9 chemotaxis protein compare
BPHYT_RS17670 -1.4 -3.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS13895 -1.4 -2.2 sugar ABC transporter substrate-binding protein compare
BPHYT_RS19340 -1.4 -3.7 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
BPHYT_RS14395 -1.4 -4.6 sugar dehydratase compare
BPHYT_RS13925 -1.4 -8.3 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
BPHYT_RS33030 -1.4 -1.2 hypothetical protein compare
BPHYT_RS12785 -1.4 -3.0 Rrf2 family transcriptional regulator compare
BPHYT_RS16085 -1.4 -2.2 DeoR faimly transcriptional regulator compare
BPHYT_RS13595 -1.4 -6.7 IclR family transcriptional regulator compare
BPHYT_RS09375 -1.4 -4.9 (2Fe-2S)-binding protein compare
BPHYT_RS02675 -1.4 -8.5 hypothetical protein compare
BPHYT_RS07325 -1.4 -0.9 GntR family transcriptional regulator compare
BPHYT_RS32260 -1.4 -1.3 hypothetical protein compare
BPHYT_RS03555 -1.4 -7.4 glutamine-synthetase adenylyltransferase compare
BPHYT_RS15615 -1.3 -2.8 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS03135 -1.3 -6.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02560 -1.3 -5.4 glutathione synthetase compare
BPHYT_RS16320 -1.3 -3.3 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS16075 -1.3 -8.6 D-arabinitol 4-dehydrogenase compare
BPHYT_RS17745 -1.3 -4.5 toluene tolerance family protein compare
BPHYT_RS14210 -1.3 -3.6 hydroxyacylglutathione hydrolase compare
BPHYT_RS14180 -1.3 -2.9 membrane protein compare
BPHYT_RS12840 -1.2 -2.3 pyruvate dehydrogenase compare
BPHYT_RS17100 -1.2 -4.1 RNA pyrophosphohydrolase compare
BPHYT_RS31650 -1.2 -2.0 FAD-binding protein compare
BPHYT_RS33965 -1.2 -1.7 methylcitrate synthase compare
BPHYT_RS22730 -1.2 -3.8 serine/threonine kinase compare
BPHYT_RS20475 -1.2 -2.0 hypothetical protein compare
BPHYT_RS01485 -1.2 -0.7 histidine kinase compare
BPHYT_RS11765 -1.2 -1.0 polyamine ABC transporter permease compare


Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days across organisms