Experiment set34S262 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS11125 +2.7 5.2 alkylhydroperoxidase compare
BPHYT_RS20700 +2.1 7.4 nucleoside hydrolase compare
BPHYT_RS27330 +2.1 1.5 hypothetical protein compare
BPHYT_RS31400 +2.1 2.5 methyl-accepting chemotaxis protein compare
BPHYT_RS16445 +1.9 2.1 RNA helicase compare
BPHYT_RS34665 +1.8 3.7 hypothetical protein compare
BPHYT_RS05235 +1.7 3.2 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS07665 +1.7 2.5 hypothetical protein compare
BPHYT_RS25405 +1.7 1.9 CoA-transferase compare
BPHYT_RS36320 +1.7 1.8 type IV secretion system family protein compare
BPHYT_RS07435 +1.7 1.5 amino acid transporter compare
BPHYT_RS08905 +1.6 1.1 peroxiredoxin compare
BPHYT_RS30490 +1.6 2.2 2-haloalkanoic acid dehalogenase compare
BPHYT_RS24755 +1.6 2.0 catalase compare
BPHYT_RS11535 +1.4 2.0 membrane protein compare
BPHYT_RS18340 +1.4 2.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS33990 +1.4 1.8 ATPase compare
BPHYT_RS02765 +1.2 1.0 cytochrome BD oxidase subunit I compare
BPHYT_RS30810 +1.2 2.5 transcriptional regulator compare
BPHYT_RS16880 +1.2 0.8 malic enzyme compare
BPHYT_RS15800 +1.2 1.0 GntR family transcriptional regulator compare
BPHYT_RS07675 +1.2 2.6 ABC transporter for L-Arginine, permease component 2 (from data) compare
BPHYT_RS18985 +1.2 1.3 hypothetical protein compare
BPHYT_RS30485 +1.2 1.6 ABC transporter ATP-binding protein compare
BPHYT_RS07925 +1.2 2.6 glutamine amidotransferase compare
BPHYT_RS30685 +1.2 4.8 ubiquinol oxidase subunit II, cyanide insensitive compare
BPHYT_RS01630 +1.2 2.1 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS33150 +1.2 1.2 beta-lactamase compare
BPHYT_RS06265 +1.2 1.8 3-demethylubiquinone-9 3-methyltransferase compare
BPHYT_RS35215 +1.1 1.2 dehydrogenase compare
BPHYT_RS16470 +1.1 6.2 DeoR faimly transcriptional regulator compare
BPHYT_RS09880 +1.1 2.8 MFS transporter compare
BPHYT_RS27865 +1.1 3.1 ATPase compare
BPHYT_RS26470 +1.1 1.4 MFS transporter compare
BPHYT_RS26595 +1.1 1.8 carbonic anhydrase compare
BPHYT_RS05610 +1.1 7.2 DNA-cytosine methyltransferase compare
BPHYT_RS07050 +1.0 1.3 membrane protein compare
BPHYT_RS25030 +1.0 1.4 gluconate 2-dehydrogenase compare
BPHYT_RS19260 +1.0 1.3 hypothetical protein compare
BPHYT_RS13570 +1.0 2.3 cytochrome P450 compare
BPHYT_RS00770 +1.0 1.3 conjugal transfer protein TraC compare
BPHYT_RS11005 +1.0 2.5 chromate transporter compare
BPHYT_RS22860 +1.0 1.4 chemotaxis protein CheY compare
BPHYT_RS24925 +1.0 1.4 cytochrome O ubiquinol oxidase compare
BPHYT_RS21215 +1.0 2.8 Crp/Fnr family transcriptional regulator compare
BPHYT_RS27890 +1.0 1.2 hypothetical protein compare
BPHYT_RS28885 +1.0 1.8 betaine-aldehyde dehydrogenase compare
BPHYT_RS10360 +1.0 0.8 MFS transporter compare
BPHYT_RS34235 +1.0 1.7 putative accessory domain for L-fuconate/L-rhamnonate dehydratase (EC 4.2.1.68; EC 4.2.1.90) (from data) compare
BPHYT_RS21870 +0.9 2.6 hypothetical protein compare
BPHYT_RS05405 +0.9 2.3 GCN5 family acetyltransferase compare
BPHYT_RS07090 +0.9 2.6 hypothetical protein compare
BPHYT_RS35665 +0.9 2.9 ABC transporter permease compare
BPHYT_RS20395 +0.9 2.3 short-chain dehydrogenase compare
BPHYT_RS14370 +0.9 1.5 ribonuclease III compare
BPHYT_RS15115 +0.9 2.1 excinuclease ABC subunit A compare
BPHYT_RS07540 +0.9 1.1 hypothetical protein compare
BPHYT_RS18965 +0.9 2.1 chemotaxis protein CheY compare
BPHYT_RS27100 +0.9 3.4 RNase II stability modulator compare
BPHYT_RS11635 +0.9 0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS20425 +0.9 1.7 hypothetical protein compare
BPHYT_RS05515 +0.9 2.1 hypothetical protein compare
BPHYT_RS19785 +0.9 1.6 chemotaxis protein CheY compare
BPHYT_RS33170 +0.9 2.8 acetyltransferase compare
BPHYT_RS23950 +0.9 1.3 DMT family permease compare
BPHYT_RS03830 +0.9 1.4 hypothetical protein compare
BPHYT_RS28440 +0.9 1.9 heat shock Hsp20 compare
BPHYT_RS27895 +0.8 2.5 enoyl-CoA hydratase compare
BPHYT_RS34500 +0.8 1.9 hypothetical protein compare
BPHYT_RS10720 +0.8 1.4 hypothetical protein compare
BPHYT_RS29085 +0.8 1.1 LysR family transcriptional regulator compare
BPHYT_RS24055 +0.8 1.5 oxidoreductase compare
BPHYT_RS35495 +0.8 1.9 nucleotide pyrophosphohydrolase compare
BPHYT_RS28380 +0.8 2.4 lon protease compare
BPHYT_RS21460 +0.8 1.6 UDP-N-acetylglucosamine 2-epimerase compare
BPHYT_RS27545 +0.8 2.1 histidine kinase compare
BPHYT_RS34920 +0.8 2.0 IclR family transcriptional regulator compare
BPHYT_RS13275 +0.8 3.0 methyltransferase compare
BPHYT_RS22530 +0.8 1.4 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS13520 +0.8 1.0 isopropylmalate isomerase compare
BPHYT_RS23295 +0.8 1.7 O-methyltransferase compare
BPHYT_RS36570 +0.8 1.8 histone compare
BPHYT_RS28065 +0.8 1.1 hypothetical protein compare
BPHYT_RS07625 +0.8 1.9 alpha/beta hydrolase compare
BPHYT_RS33245 +0.8 2.2 hypothetical protein compare
BPHYT_RS04430 +0.8 1.1 amino acid ABC transporter ATPase compare
BPHYT_RS32475 +0.8 1.3 dihydroxyacetone kinase compare
BPHYT_RS33130 +0.8 1.7 transcriptional regulator compare
BPHYT_RS11310 +0.8 0.9 LysR family transcriptional regulator compare
BPHYT_RS10810 +0.8 1.2 glucose-methanol-choline oxidoreductase compare
BPHYT_RS27295 +0.8 0.8 hypothetical protein compare
BPHYT_RS08395 +0.8 1.8 DSBA oxidoreductase compare
BPHYT_RS30190 +0.8 2.5 ABC transporter permease compare
BPHYT_RS09315 +0.8 0.4 chemotaxis protein CheY compare
BPHYT_RS03755 +0.8 1.8 pilus assembly protein PilE compare
BPHYT_RS27065 +0.7 1.3 hypothetical protein compare
BPHYT_RS11425 +0.7 1.6 chemotaxis protein compare
BPHYT_RS01435 +0.7 6.2 LysR family transcriptional regulator compare
BPHYT_RS16090 +0.7 0.7 hypothetical protein compare
BPHYT_RS09995 +0.7 2.3 membrane protein compare
BPHYT_RS07450 +0.7 1.5 histidine kinase compare
BPHYT_RS16495 +0.7 4.6 glycerol kinase compare
BPHYT_RS21775 +0.7 1.7 long-chain fatty acid--CoA ligase compare
BPHYT_RS23535 +0.7 0.9 ABC transporter substrate-binding protein compare
BPHYT_RS30860 +0.7 1.1 sugar ABC transporter permease compare
BPHYT_RS01790 +0.7 5.9 LuxR family transcriptional regulator compare
BPHYT_RS30085 +0.7 1.2 hypothetical protein compare
BPHYT_RS27985 +0.7 1.6 LacI family transcriptional regulator compare
BPHYT_RS20650 +0.7 2.4 hypothetical protein compare
BPHYT_RS28285 +0.7 1.0 MFS transporter compare
BPHYT_RS25770 +0.7 1.3 hypothetical protein compare
BPHYT_RS16590 +0.7 3.3 Fis family transcriptional regulator compare
BPHYT_RS11820 +0.7 2.2 amidohydrolase compare
BPHYT_RS30100 +0.7 1.0 copper oxidase compare
BPHYT_RS24105 +0.7 1.4 chloroperoxidase compare
BPHYT_RS32495 +0.7 1.6 ABC transporter compare
BPHYT_RS30880 +0.7 2.6 peptidase S13 compare
BPHYT_RS22105 +0.7 1.4 tRNA synthetase compare
BPHYT_RS07755 +0.7 4.8 diguanylate cyclase compare
BPHYT_RS04875 +0.7 1.3 alpha-ribazole phosphatase compare
BPHYT_RS30585 +0.7 2.5 dTDP-glucose 4,6-dehydratase compare
BPHYT_RS33570 +0.7 1.1 GTP cyclohydrolase compare
BPHYT_RS29585 +0.7 1.3 hypothetical protein compare
BPHYT_RS14295 +0.7 1.8 GumN family protein compare
BPHYT_RS31705 +0.7 1.1 MFS transporter compare
BPHYT_RS35780 +0.7 2.1 Hrp-dependent type III effector protein compare
BPHYT_RS24070 +0.7 1.8 hypothetical protein compare
BPHYT_RS17240 +0.7 0.7 cell division protein FtsW compare
BPHYT_RS17030 +0.7 1.1 lipid hydroperoxide peroxidase compare
BPHYT_RS08090 +0.7 2.4 hemolysin D compare
BPHYT_RS11385 +0.7 2.7 lipid A biosynthesis lauroyl acyltransferase compare
BPHYT_RS34815 +0.7 1.0 ABC transporter compare
BPHYT_RS23455 +0.7 0.7 phosphorylase compare
BPHYT_RS26355 +0.7 1.0 hypothetical protein compare
BPHYT_RS15350 +0.7 2.4 hypothetical protein compare
BPHYT_RS35400 +0.7 1.2 ABC transporter compare
BPHYT_RS09885 +0.7 1.4 isomerase compare
BPHYT_RS11750 +0.7 1.6 spermidine/putrescine ABC transporter ATP-binding protein compare
BPHYT_RS30415 +0.7 1.2 AraC family transcriptional regulator compare
BPHYT_RS01795 +0.7 4.9 histidine kinase compare
BPHYT_RS25230 +0.7 1.4 formyltetrahydrofolate deformylase compare
BPHYT_RS18415 +0.7 1.0 hypothetical protein compare
BPHYT_RS08475 +0.6 0.9 hypothetical protein compare
BPHYT_RS24590 +0.6 0.8 DeoR faimly transcriptional regulator compare
BPHYT_RS18290 +0.6 3.3 AsnC family transcriptional regulator compare
BPHYT_RS16855 +0.6 4.5 16S rRNA methyltransferase compare
BPHYT_RS24440 +0.6 2.3 type VI secretion protein compare
BPHYT_RS21505 +0.6 1.2 amidohydrolase compare
BPHYT_RS32345 +0.6 1.5 LrgB family protein compare
BPHYT_RS13590 +0.6 1.5 ABC transporter substrate-binding protein compare
BPHYT_RS22215 +0.6 1.2 hypothetical protein compare
BPHYT_RS27305 +0.6 1.1 hypothetical protein compare
BPHYT_RS13610 +0.6 2.1 MerR family transcriptional regulator compare
BPHYT_RS20845 +0.6 1.2 peroxidase compare
BPHYT_RS30510 +0.6 2.5 aldehyde dehydrogenase compare
BPHYT_RS31385 +0.6 1.3 ketoacyl reductase compare
BPHYT_RS24255 +0.6 1.0 hypothetical protein compare
BPHYT_RS28495 +0.6 2.1 peptidase M24 compare
BPHYT_RS22195 +0.6 3.3 hypothetical protein compare
BPHYT_RS01180 +0.6 0.9 AraC family transcriptional regulator compare
BPHYT_RS34190 +0.6 2.0 chemotaxis protein compare
BPHYT_RS19025 +0.6 4.0 transcriptional regulator compare
BPHYT_RS23650 +0.6 0.6 hypothetical protein compare
BPHYT_RS33740 +0.6 1.9 hypothetical protein compare
BPHYT_RS04005 +0.6 1.3 GDP-L-fucose synthase compare
BPHYT_RS14070 +0.6 1.8 hypothetical protein compare
BPHYT_RS04510 +0.6 1.1 urease subunit alpha compare
BPHYT_RS32540 +0.6 1.5 hypothetical protein compare
BPHYT_RS05565 +0.6 1.1 membrane protein compare
BPHYT_RS05570 +0.6 1.6 hypothetical protein compare
BPHYT_RS25080 +0.6 1.1 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS07315 +0.6 2.2 lipase compare
BPHYT_RS13110 +0.6 2.5 ABC transporter substrate-binding protein compare
BPHYT_RS05365 +0.6 0.9 3-ketoacyl-ACP reductase compare
BPHYT_RS27720 +0.6 0.8 hypothetical protein compare
BPHYT_RS09675 +0.6 2.2 hypothetical protein compare
BPHYT_RS20185 +0.6 0.8 sugar transferase compare
BPHYT_RS25150 +0.6 2.0 class C beta-lactamase compare
BPHYT_RS09835 +0.6 2.1 uroporphyrin-III C-methyltransferase compare
BPHYT_RS07750 +0.6 2.7 histidine kinase compare
BPHYT_RS21975 +0.6 1.4 2-dehydropantoate 2-reductase compare
BPHYT_RS22750 +0.6 1.6 Flagellar brake protein YcgR 2 compare
BPHYT_RS02505 +0.6 1.4 spermidine/putrescine ABC transporter ATPase compare
BPHYT_RS32880 +0.6 0.8 alanine acetyltransferase compare
BPHYT_RS15455 +0.6 2.6 hypothetical protein compare
BPHYT_RS07385 +0.6 1.4 glycosyl transferase family 1 compare
BPHYT_RS25470 +0.6 0.9 alkylhydroperoxidase compare
BPHYT_RS23140 +0.6 1.7 putrescine/spermidine ABC transporter permease compare
BPHYT_RS29110 +0.6 1.5 DNA-directed DNA polymerase compare
BPHYT_RS03955 +0.6 1.8 glycosyl transferase compare
BPHYT_RS22320 +0.6 2.1 hypothetical protein compare
BPHYT_RS16055 +0.6 1.4 sugar ABC transporter permease compare
BPHYT_RS28840 +0.6 1.8 oxidoreductase compare
BPHYT_RS18920 +0.6 1.9 hypothetical protein compare
BPHYT_RS07200 +0.6 2.9 AraC family transcriptional regulator compare
BPHYT_RS27390 +0.6 1.5 hydroxyacid dehydrogenase compare
BPHYT_RS18635 +0.6 1.1 LamB/YcsF family protein compare
BPHYT_RS31450 +0.6 1.9 hypothetical protein compare
BPHYT_RS20595 +0.6 0.8 hypothetical protein compare
BPHYT_RS22145 +0.6 1.1 phosphoesterase compare


Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days across organisms