Experiment set34S262 for Burkholderia phytofirmans PsJN

Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days

Group: in planta
Media: + Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days
Culturing: BFirm_ML3b, plate, at 26 (C), (Solid)
By: Marta Torres on 9-Jan-24

Specific Phenotypes

For 8 genes in this experiment

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Arabidopsis_thaliana_col0; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_0.8%agar; Collection=outgrowth_LB; Time=7_days across organisms

SEED Subsystems

Subsystem	#Specific
Inositol catabolism	2
Ammonia assimilation	1
Homogentisate pathway of aromatic compound degradation	1
Purine conversions	1
Queuosine-Archaeosine Biosynthesis	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Inositol phosphate metabolism
• Pentose and glucuronate interconversions
• Galactose metabolism
• Purine metabolism
• Nicotinate and nicotinamide metabolism
• Biosynthesis of ansamycins

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
guanine and guanosine salvage II	2	2	1
adenine and adenosine salvage II	2	2	1
myo-inositol degradation I	7	7	3
superpathway of guanosine nucleotides degradation (plants)	6	5	2
myo-, chiro- and scyllo-inositol degradation	10	7	3
guanosine nucleotides degradation II	4	4	1
adenosine nucleotides degradation I	8	7	2
purine nucleotides degradation I (plants)	12	10	3
guanosine nucleotides degradation I	4	3	1
superpathway of purines degradation in plants	18	14	3