Experiment set32S52 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -4.8 -4.5 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS02610 -4.7 -4.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS04955 -4.4 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS17265 -4.1 -1.2 cell division protein compare
BPHYT_RS17690 -4.1 -11.2 imidazole glycerol phosphate synthase compare
BPHYT_RS33645 -3.9 -3.8 homoserine kinase compare
BPHYT_RS33865 -3.9 -9.5 tryptophan synthase alpha chain compare
BPHYT_RS16270 -3.9 -3.2 phosphoglycerate kinase compare
BPHYT_RS12845 -3.8 -14.7 ATPase compare
BPHYT_RS33875 -3.8 -11.8 tryptophan synthase subunit alpha compare
BPHYT_RS33880 -3.6 -11.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS03150 -3.5 -15.5 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS02690 -3.5 -15.0 protoheme IX farnesyltransferase compare
BPHYT_RS17405 -3.4 -1.0 indole-3-glycerol phosphate synthase compare
BPHYT_RS16835 -3.4 -8.9 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS08955 -3.3 -4.7 homoserine dehydrogenase compare
BPHYT_RS13705 -3.3 -4.1 chorismate synthase compare
BPHYT_RS17685 -3.3 -9.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS02590 -3.3 -7.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17885 -3.1 -5.0 3-dehydroquinate synthase compare
BPHYT_RS06555 -3.1 -9.5 ketol-acid reductoisomerase compare
BPHYT_RS06610 -3.1 -1.7 triosephosphate isomerase compare
BPHYT_RS17670 -2.9 -5.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17715 -2.9 -13.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS15920 -2.9 -13.5 argininosuccinate synthase compare
BPHYT_RS17520 -2.8 -3.7 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS16245 -2.8 -1.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS12465 -2.8 -1.5 inositol monophosphatase compare
BPHYT_RS33920 -2.7 -4.8 type II citrate synthase compare
BPHYT_RS35885 -2.7 -4.7 hypothetical protein compare
BPHYT_RS05320 -2.7 -1.1 beta-lactamase compare
BPHYT_RS08960 -2.6 -1.2 threonine synthase compare
BPHYT_RS06405 -2.6 -5.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS16905 -2.6 -3.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS18320 -2.6 -3.1 orotate phosphoribosyltransferase compare
BPHYT_RS12985 -2.6 -1.4 amino acid acetyltransferase compare
BPHYT_RS17395 -2.6 -3.4 anthranilate synthase subunit II compare
BPHYT_RS17945 -2.6 -2.6 cytochrome C biogenesis protein compare
BPHYT_RS32260 -2.6 -0.9 hypothetical protein compare
BPHYT_RS12530 -2.6 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS04335 -2.6 -1.2 membrane protein compare
BPHYT_RS12990 -2.6 -3.5 iron transporter compare
BPHYT_RS18970 -2.5 -12.5 chemotaxis protein compare
BPHYT_RS06075 -2.5 -8.2 hypothetical protein compare
BPHYT_RS06545 -2.4 -10.5 acetolactate synthase compare
BPHYT_RS33840 -2.4 -2.8 amidophosphoribosyltransferase compare
BPHYT_RS33580 -2.3 -2.7 geranyltranstransferase compare
BPHYT_RS22360 -2.3 -4.8 response regulator receiver compare
BPHYT_RS12150 -2.3 -12.2 PII uridylyl-transferase compare
BPHYT_RS14895 -2.3 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS12725 -2.2 -11.5 regulator compare
BPHYT_RS15915 -2.2 -10.7 ornithine carbamoyltransferase compare
BPHYT_RS17380 -2.2 -6.9 ribulose-phosphate 3-epimerase compare
BPHYT_RS34780 -2.2 -4.4 phytoene synthase compare
BPHYT_RS06975 -2.2 -1.2 glutamate racemase compare
BPHYT_RS06900 -2.2 -4.6 aspartate aminotransferase compare
BPHYT_RS04965 -2.2 -9.5 ATP-binding protein compare
BPHYT_RS04290 -2.2 -1.2 glycosyl transferase family 2 compare
BPHYT_RS20245 -2.2 -6.7 iron ABC transporter substrate-binding protein compare
BPHYT_RS12055 -2.2 -12.8 phosphoenolpyruvate synthase compare
BPHYT_RS14190 -2.1 -3.1 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16345 -2.1 -3.7 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS02480 -2.1 -0.8 alkaline phosphatase compare
BPHYT_RS09330 -2.1 -8.8 phytoene synthase compare
BPHYT_RS30140 -2.1 -1.6 3-methylitaconate isomerase compare
BPHYT_RS33655 -2.1 -5.5 MarR family transcriptional regulator compare
BPHYT_RS15620 -2.1 -3.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS00815 -2.1 -2.0 hypothetical protein compare
BPHYT_RS03400 -2.1 -1.4 ATP-dependent DNA helicase RecG compare
BPHYT_RS02685 -2.1 -7.6 cytochrome C oxidase subunit I compare
BPHYT_RS14915 -2.0 -5.4 phosphoserine aminotransferase compare
BPHYT_RS08125 -2.0 -8.4 ATPase compare
BPHYT_RS03280 -2.0 -1.3 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS15710 -1.9 -0.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS13890 -1.9 -2.8 RpiR family transcriptional regulator compare
BPHYT_RS09160 -1.9 -3.6 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS02860 -1.9 -0.5 membrane protein compare
BPHYT_RS16340 -1.8 -2.6 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS17700 -1.8 -3.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS14275 -1.8 -2.9 hypothetical protein compare
BPHYT_RS18255 -1.8 -1.7 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS06685 -1.8 -1.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS12840 -1.8 -2.9 pyruvate dehydrogenase compare
BPHYT_RS06410 -1.8 -3.4 transcriptional regulator compare
BPHYT_RS14400 -1.8 -3.1 anti-sigma factor compare
BPHYT_RS01455 -1.8 -0.7 peptide deformylase compare
BPHYT_RS06530 -1.7 -1.4 membrane protein compare
BPHYT_RS17445 -1.7 -3.5 GTP-binding protein YchF compare
BPHYT_RS05010 -1.7 -4.2 RpiR family transcriptional regulator compare
BPHYT_RS22730 -1.7 -5.3 serine/threonine kinase compare
BPHYT_RS08945 -1.7 -5.6 hypothetical protein compare
BPHYT_RS01630 -1.6 -2.9 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS02525 -1.6 -4.3 membrane protein compare
BPHYT_RS13925 -1.6 -8.4 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) compare
BPHYT_RS09385 -1.6 -1.1 FAD-dependent oxidoreductase compare
BPHYT_RS03645 -1.6 -1.6 tRNA dimethylallyltransferase compare
BPHYT_RS17890 -1.6 -1.2 shikimate kinase compare
BPHYT_RS16710 -1.6 -0.4 LysR family transcriptional regulator compare
BPHYT_RS19545 -1.6 -4.2 nuclear protein SET compare
BPHYT_RS06985 -1.6 -4.1 fumarate hydratase compare
BPHYT_RS14755 -1.5 -2.3 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS20235 -1.5 -3.5 iron ABC transporter compare
BPHYT_RS17185 -1.5 -6.3 N-acetylglutamate synthase compare
BPHYT_RS18765 -1.5 -4.2 flagellar biosynthesis protein FliS compare
BPHYT_RS06600 -1.5 -1.6 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS05490 -1.5 -5.6 porin compare
BPHYT_RS19115 -1.5 -2.5 acyl carrier protein compare
BPHYT_RS18270 -1.5 -6.0 phenylacetic acid degradation protein compare
BPHYT_RS03155 -1.5 -2.6 histidine triad (HIT) protein compare
BPHYT_RS13245 -1.5 -6.2 hypothetical protein compare
BPHYT_RS36220 -1.5 -1.1 hypothetical protein compare
BPHYT_RS24580 -1.4 -1.8 hypothetical protein compare
BPHYT_RS23600 -1.4 -2.5 hypothetical protein compare
BPHYT_RS28705 -1.4 -1.7 IclR family transcriptional regulator compare
BPHYT_RS18265 -1.4 -3.2 phenylacetate-CoA oxygenase subunit PaaJ compare
BPHYT_RS03640 -1.4 -0.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS25780 -1.4 -1.1 DeoR faimly transcriptional regulator compare
BPHYT_RS30790 -1.4 -3.9 porin compare
BPHYT_RS10345 -1.4 -1.3 flagellar motor protein MotB compare
BPHYT_RS06175 -1.4 -4.0 LPS biosynthesis compare
BPHYT_RS13645 -1.4 -9.7 threonine--tRNA ligase compare
BPHYT_RS13920 -1.4 -3.9 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) compare
BPHYT_RS17400 -1.4 -5.0 anthranilate phosphoribosyltransferase compare
BPHYT_RS05155 -1.4 -4.4 acetyltransferase GCN5 compare
BPHYT_RS17390 -1.3 -8.7 anthranilate synthase subunit I compare
BPHYT_RS02640 -1.3 -8.4 cytochrome C oxidase compare
BPHYT_RS11825 -1.3 -0.7 cytosine deaminase compare
BPHYT_RS22940 -1.3 -1.7 pilus assembly protein TadE compare
BPHYT_RS19325 -1.3 -2.2 glycine cleavage system H protein compare
BPHYT_RS01595 -1.3 -9.4 homoserine O-acetyltransferase compare
BPHYT_RS06550 -1.3 -1.6 acetolactate synthase compare
BPHYT_RS17975 -1.3 -3.0 cytochrome C biogenesis protein compare
BPHYT_RS06070 -1.3 -4.6 cytochrome C compare
BPHYT_RS17675 -1.3 -0.9 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS27230 -1.3 -1.9 hypothetical protein compare
BPHYT_RS15415 -1.3 -6.6 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14185 -1.3 -2.1 transcription elongation factor GreA compare
BPHYT_RS22580 -1.3 -3.8 transcriptional regulator compare
BPHYT_RS26855 -1.3 -3.2 carboxyvinyl-carboxyphosphonate phosphorylmutase compare
BPHYT_RS04455 -1.3 -1.0 glycosyl transferase compare
BPHYT_RS17075 -1.3 -2.8 ABC transporter permease compare
BPHYT_RS13895 -1.3 -1.2 sugar ABC transporter substrate-binding protein compare
BPHYT_RS32280 -1.3 -2.0 membrane protein compare
BPHYT_RS02135 -1.3 -1.3 glyoxylate reductase compare
BPHYT_RS14865 -1.2 -0.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS04080 -1.2 -3.1 chloride channel protein compare
BPHYT_RS16435 -1.2 -7.9 alcohol dehydrogenase compare
BPHYT_RS02130 -1.2 -1.5 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS18590 -1.2 -0.5 hypothetical protein compare
BPHYT_RS29550 -1.2 -4.9 RND transporter compare
BPHYT_RS15615 -1.2 -2.4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS17095 -1.2 -1.4 proline--tRNA ligase compare
BPHYT_RS33610 -1.2 -0.6 DNA polymerase I compare
BPHYT_RS21870 -1.2 -1.9 hypothetical protein compare
BPHYT_RS26490 -1.2 -1.1 hypothetical protein compare
BPHYT_RS08170 -1.2 -2.2 pilus assembly protein CpaB compare
BPHYT_RS06065 -1.2 -5.9 cytochrome C compare
BPHYT_RS18995 -1.2 -4.6 purine-binding chemotaxis protein compare
BPHYT_RS28235 -1.2 -3.1 L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) (from data) compare
BPHYT_RS17855 -1.2 -7.4 glutamate synthase compare
BPHYT_RS28480 -1.2 -2.1 hydroxyglutarate oxidase compare
BPHYT_RS11555 -1.2 -2.4 allantoinase compare
BPHYT_RS06375 -1.2 -2.2 ribonuclease compare
BPHYT_RS03170 -1.1 -2.0 membrane protein compare
BPHYT_RS10095 -1.1 -0.9 integrase compare
BPHYT_RS23270 -1.1 -0.9 enoyl-CoA hydratase compare
BPHYT_RS09620 -1.1 -2.3 aminodeoxychorismate lyase compare
BPHYT_RS14105 -1.1 -6.6 exopolyphosphatase compare
BPHYT_RS00900 -1.1 -0.6 beta-lactamase compare
BPHYT_RS36035 -1.1 -1.6 hypothetical protein compare
BPHYT_RS26535 -1.1 -3.7 GntR family transcriptional regulator compare
BPHYT_RS03110 -1.1 -1.7 MarR family transcriptional regulator compare
BPHYT_RS15190 -1.1 -1.5 acyl carrier protein compare
BPHYT_RS16080 -1.1 -3.2 xylulokinase compare
BPHYT_RS33915 -1.1 -4.8 isopropylmalate isomerase compare
BPHYT_RS19000 -1.1 -4.3 chemotaxis protein CheA compare
BPHYT_RS35530 -1.1 -1.9 arsenate reductase compare
BPHYT_RS03090 -1.1 -0.9 hypothetical protein compare
BPHYT_RS14505 -1.1 -1.6 membrane protein compare
BPHYT_RS17920 -1.1 -0.6 protein CyaY compare
BPHYT_RS02285 -1.1 -4.6 cell division protein compare
BPHYT_RS08545 -1.1 -1.4 oxidoreductase compare
BPHYT_RS30720 -1.1 -2.0 hypothetical protein compare
BPHYT_RS15305 -1.1 -4.3 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS02665 -1.1 -4.9 MFS transporter compare
BPHYT_RS16085 -1.1 -2.2 DeoR faimly transcriptional regulator compare
BPHYT_RS08165 -1.1 -1.9 pilus assembly protein TadE compare
BPHYT_RS19320 -1.1 -3.7 glycine cleavage system protein T compare
BPHYT_RS29020 -1.1 -2.7 hypothetical protein compare
BPHYT_RS13910 -1.0 -3.0 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) compare
BPHYT_RS11155 -1.0 -1.0 hypothetical protein compare
BPHYT_RS29865 -1.0 -1.5 sugar transferase compare
BPHYT_RS04950 -1.0 -6.1 hypothetical protein compare
BPHYT_RS36060 -1.0 -3.2 hypothetical protein compare
BPHYT_RS00020 -1.0 -3.0 PAAR compare
BPHYT_RS18250 -1.0 -3.9 phenylacetate-CoA oxygenase subunit PaaA compare
BPHYT_RS28505 -1.0 -2.8 5-deoxyglucuronate isomerase compare
BPHYT_RS13885 -1.0 -1.0 myo-inositol 2-dehydrogenase compare
BPHYT_RS11400 -1.0 -1.7 hypothetical protein compare
BPHYT_RS08235 -1.0 -0.3 nucleoprotein, Hfg, host factor I compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days across organisms