Experiment set32S52 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS27865 +4.7 1.8 ATPase compare
BPHYT_RS16950 +3.2 12.1 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data) compare
BPHYT_RS01485 +3.0 0.8 histidine kinase compare
BPHYT_RS17030 +2.6 1.0 lipid hydroperoxide peroxidase compare
BPHYT_RS32595 +2.6 1.0 hypothetical protein compare
BPHYT_RS28860 +2.6 1.0 haloacid dehalogenase compare
BPHYT_RS02765 +2.6 1.2 cytochrome BD oxidase subunit I compare
BPHYT_RS21485 +2.6 1.2 hypothetical protein compare
BPHYT_RS27175 +2.5 1.0 DNA-binding protein compare
BPHYT_RS25110 +2.2 1.0 sarcosine oxidase subunit delta compare
BPHYT_RS35495 +2.2 1.6 nucleotide pyrophosphohydrolase compare
BPHYT_RS29085 +2.2 1.6 LysR family transcriptional regulator compare
BPHYT_RS20210 +2.1 2.1 antibiotic biosynthesis monooxygenase compare
BPHYT_RS05620 +2.1 1.5 CsbD family protein compare
BPHYT_RS26080 +2.1 1.0 ABC transporter ATPase compare
BPHYT_RS17240 +2.0 1.1 cell division protein FtsW compare
BPHYT_RS29920 +1.9 0.9 hypothetical protein compare
BPHYT_RS02770 +1.9 2.6 membrane protein compare
BPHYT_RS14370 +1.8 2.0 ribonuclease III compare
BPHYT_RS10645 +1.8 1.3 cyanate hydratase compare
BPHYT_RS30465 +1.8 0.7 short-chain dehydrogenase compare
BPHYT_RS34530 +1.7 1.7 LysR family transcriptional regulator compare
BPHYT_RS23955 +1.7 1.9 LysR family transcriptional regulator compare
BPHYT_RS35560 +1.7 1.5 endoribonuclease L-PSP compare
BPHYT_RS00295 +1.6 1.7 hypothetical protein compare
BPHYT_RS11485 +1.6 3.2 6-phosphogluconate dehydrogenase compare
BPHYT_RS23030 +1.6 0.9 gluconate 2-dehydrogenase compare
BPHYT_RS27395 +1.6 1.6 N-acetyltransferase GCN5 compare
BPHYT_RS30010 +1.6 1.0 cell division protein compare
BPHYT_RS25140 +1.6 1.1 hypothetical protein compare
BPHYT_RS07050 +1.6 1.0 membrane protein compare
BPHYT_RS30420 +1.6 2.0 transcriptional regulator compare
BPHYT_RS13390 +1.5 0.8 IclR family transcriptional regulator compare
BPHYT_RS27305 +1.5 1.3 hypothetical protein compare
BPHYT_RS32200 +1.5 3.4 lytic transglycosylase compare
BPHYT_RS30810 +1.5 1.3 transcriptional regulator compare
BPHYT_RS13130 +1.5 0.9 metallophosphatase compare
BPHYT_RS04920 +1.5 2.2 aspartate 1-decarboxylase compare
BPHYT_RS19985 +1.5 1.0 CoA-transferase compare
BPHYT_RS26880 +1.5 1.6 ketosteroid isomerase compare
BPHYT_RS26925 +1.5 1.9 NIPSNAP family containing protein compare
BPHYT_RS18785 +1.5 1.0 flagellar assembly protein FliH compare
BPHYT_RS03775 +1.4 1.3 peroxidase compare
BPHYT_RS20060 +1.4 1.1 hypothetical protein compare
BPHYT_RS31400 +1.4 0.7 methyl-accepting chemotaxis protein compare
BPHYT_RS10120 +1.4 1.9 membrane protein compare
BPHYT_RS08190 +1.4 1.0 type II secretion system protein compare
BPHYT_RS21530 +1.4 1.3 RNA polymerase subunit sigma-24 compare
BPHYT_RS02600 +1.4 1.0 glutaredoxin compare
BPHYT_RS34360 +1.3 3.7 methyl-accepting chemotaxis protein compare
BPHYT_RS29100 +1.3 1.1 ketosteroid isomerase compare
BPHYT_RS11965 +1.3 1.8 alkylhydroperoxidase compare
BPHYT_RS25710 +1.3 1.6 hypothetical protein compare
BPHYT_RS13105 +1.3 1.7 LacI family transcription regulator compare
BPHYT_RS07665 +1.3 1.1 hypothetical protein compare
BPHYT_RS27195 +1.3 1.8 LacI family transcriptional regulator compare
BPHYT_RS11395 +1.3 2.2 hypothetical protein compare
BPHYT_RS28830 +1.3 0.7 LysR family transcriptional regulator compare
BPHYT_RS24590 +1.3 0.7 DeoR faimly transcriptional regulator compare
BPHYT_RS08765 +1.3 0.7 ABC transporter ATP-binding protein compare
BPHYT_RS24045 +1.3 2.3 amino acid ABC transporter compare
BPHYT_RS31020 +1.2 1.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS01790 +1.2 7.6 LuxR family transcriptional regulator compare
BPHYT_RS19920 +1.2 0.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS12050 +1.2 1.9 hypothetical protein compare
BPHYT_RS20840 +1.2 1.6 beta-lactamase compare
BPHYT_RS19785 +1.2 1.5 chemotaxis protein CheY compare
BPHYT_RS13040 +1.2 0.9 hypothetical protein compare
BPHYT_RS01095 +1.2 0.8 hypothetical protein compare
BPHYT_RS00855 +1.2 1.1 hypothetical protein compare
BPHYT_RS34765 +1.2 0.8 chemotaxis protein compare
BPHYT_RS26435 +1.2 1.1 hypothetical protein compare
BPHYT_RS34370 +1.1 3.3 ATPase compare
BPHYT_RS26385 +1.1 0.9 glutamine amidotransferase compare
BPHYT_RS26355 +1.1 1.1 hypothetical protein compare
BPHYT_RS11060 +1.1 1.0 4-hydroxybenzoate 3-monooxygenase compare
BPHYT_RS11745 +1.1 0.6 (2Fe-2S)-binding protein compare
BPHYT_RS34730 +1.1 1.6 hypothetical protein compare
BPHYT_RS30485 +1.1 0.9 ABC transporter ATP-binding protein compare
BPHYT_RS06195 +1.1 1.7 membrane protein compare
BPHYT_RS13555 +1.1 1.1 acyl-CoA dehydrogenase compare
BPHYT_RS09000 +1.1 0.9 competence protein ComE compare
BPHYT_RS22295 +1.1 0.8 LysR family transcriptional regulator compare
BPHYT_RS24210 +1.1 2.2 urea transporter compare
BPHYT_RS05880 +1.1 1.1 hypothetical protein compare
BPHYT_RS11050 +1.1 1.0 molecular chaperone compare
BPHYT_RS25075 +1.1 1.1 AraC family transcriptional regulator compare
BPHYT_RS25645 +1.1 1.5 dehydrogenase compare
BPHYT_RS04560 +1.1 1.2 Hcp1 family type VI secretion system effector compare
BPHYT_RS07145 +1.1 0.6 DNA-binding protein compare
BPHYT_RS18445 +1.1 2.3 hypothetical protein compare
BPHYT_RS04985 +1.1 1.5 hypothetical protein compare
BPHYT_RS16515 +1.1 1.6 2-hydroxyacid dehydrogenase compare
BPHYT_RS01165 +1.0 1.4 hypothetical protein compare
BPHYT_RS14585 +1.0 0.6 hypothetical protein compare
BPHYT_RS25845 +1.0 0.8 RND transporter MFP subunit compare
BPHYT_RS35575 +1.0 3.6 transcriptional regulator compare
BPHYT_RS07130 +1.0 0.8 biopolymer transporter ExbD compare
BPHYT_RS24760 +1.0 1.4 cytochrome B561 compare
BPHYT_RS16390 +1.0 1.2 MarR family transcriptional regulator compare
BPHYT_RS21960 +1.0 4.1 nucleoside transporter compare
BPHYT_RS35310 +1.0 0.7 GCN5 family N-acetyltransferase compare
BPHYT_RS31450 +1.0 1.4 hypothetical protein compare
BPHYT_RS24185 +1.0 2.5 C4-dicarboxylate ABC transporter permease compare
BPHYT_RS32630 +1.0 3.0 tat pathway signal sequence compare
BPHYT_RS29035 +1.0 0.7 arsenic transporter compare
BPHYT_RS22860 +1.0 0.5 chemotaxis protein CheY compare
BPHYT_RS05945 +1.0 4.4 chromate transporter compare
BPHYT_RS08525 +1.0 0.5 SAM-dependent methyltransferase compare
BPHYT_RS09810 +1.0 2.6 hypothetical protein compare
BPHYT_RS23730 +1.0 1.4 multidrug DMT transporter permease compare
BPHYT_RS18835 +1.0 0.8 flagellar biosynthesis protein FliR compare
BPHYT_RS17525 +1.0 0.8 glutaredoxin compare
BPHYT_RS32830 +1.0 1.4 AraC family transcriptional regulator compare
BPHYT_RS04010 +1.0 0.5 glycosyl transferase compare
BPHYT_RS31635 +1.0 0.8 choline dehydrogenase compare
BPHYT_RS24395 +1.0 2.3 type VI secretion protein compare
BPHYT_RS21495 +1.0 0.6 ABC transporter compare
BPHYT_RS10500 +1.0 0.9 acetolactate synthase compare
BPHYT_RS18885 +1.0 3.9 flagellar basal body rod modification protein FlgD compare
BPHYT_RS22260 +1.0 1.0 hypothetical protein compare
BPHYT_RS13455 +1.0 3.3 methyl-accepting chemotaxis protein compare
BPHYT_RS14595 +1.0 1.8 RNA-binding protein compare
BPHYT_RS23410 +1.0 1.2 hypothetical protein compare
BPHYT_RS36585 +1.0 1.6 hypothetical protein compare
BPHYT_RS08600 +1.0 0.9 hypothetical protein compare
BPHYT_RS31030 +1.0 1.8 tyrosine protein kinase compare
BPHYT_RS27755 +1.0 2.2 glycosyl hydrolase family 18 compare
BPHYT_RS36400 +1.0 0.6 hypothetical protein compare
BPHYT_RS26185 +1.0 0.5 thioesterase compare
BPHYT_RS33745 +1.0 1.9 metallophosphoesterase compare
BPHYT_RS07160 +1.0 3.3 ABC transporter permease compare
BPHYT_RS28365 +1.0 1.0 Germin subfamily 1 member 15 compare
BPHYT_RS32270 +1.0 1.6 transposase compare
BPHYT_RS25950 +1.0 1.9 sensor histidine kinase compare
BPHYT_RS09910 +1.0 1.4 tyramine oxidase compare
BPHYT_RS20565 +0.9 2.4 photosystem reaction center subunit H compare
BPHYT_RS14180 +0.9 1.5 membrane protein compare
BPHYT_RS30255 +0.9 2.6 hypothetical protein compare
BPHYT_RS26975 +0.9 0.9 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS16815 +0.9 0.9 ureidoglycolate hydrolase compare
BPHYT_RS34410 +0.9 0.7 hypothetical protein compare
BPHYT_RS25395 +0.9 1.0 3-oxoacyl-ACP reductase compare
BPHYT_RS09900 +0.9 2.7 aldehyde dehydrogenase compare
BPHYT_RS14625 +0.9 3.9 transcriptional regulator compare
BPHYT_RS05690 +0.9 0.9 hypothetical protein compare
BPHYT_RS05650 +0.9 0.7 hypothetical protein compare
BPHYT_RS23675 +0.9 0.7 lysine transporter LysE compare
BPHYT_RS22560 +0.9 2.2 flagellar transcriptional regulator FlhD compare
BPHYT_RS31650 +0.9 0.7 FAD-binding protein compare
BPHYT_RS06495 +0.9 2.5 glucose-1-dehydrogenase compare
BPHYT_RS21215 +0.9 1.9 Crp/Fnr family transcriptional regulator compare
BPHYT_RS08505 +0.9 2.2 hypothetical protein compare
BPHYT_RS19025 +0.9 2.7 transcriptional regulator compare
BPHYT_RS08980 +0.9 2.9 Globin compare
BPHYT_RS19260 +0.9 0.7 hypothetical protein compare
BPHYT_RS13315 +0.9 1.2 dihydropyrimidine dehydrogenase subunit A compare
BPHYT_RS03190 +0.9 1.6 FmdB family transcriptional regulator compare
BPHYT_RS01970 +0.9 4.0 methyl-accepting chemotaxis protein compare
BPHYT_RS14095 +0.9 1.9 phosphohistidine phosphatase compare
BPHYT_RS29150 +0.9 1.3 lysine transporter LysE compare
BPHYT_RS28635 +0.9 1.5 hypothetical protein compare
BPHYT_RS03065 +0.9 0.9 LuxR family transcriptional regulator compare
BPHYT_RS16335 +0.9 0.9 membrane protein compare
BPHYT_RS34700 +0.9 2.0 arsenate reductase compare
BPHYT_RS15775 +0.9 1.8 peptide ABC transporter permease compare
BPHYT_RS28720 +0.9 1.4 shikimate dehydrogenase compare
BPHYT_RS05290 +0.9 0.7 hypothetical protein compare
BPHYT_RS30285 +0.9 1.2 succinate-semialdehyde dehydrogenase compare
BPHYT_RS07395 +0.9 1.9 glycoside hydrolase compare
BPHYT_RS28995 +0.9 2.2 histidine kinase compare
BPHYT_RS03480 +0.9 4.2 ferritin compare
BPHYT_RS24670 +0.9 1.3 ABC transporter permease compare
BPHYT_RS05870 +0.9 1.6 hypothetical protein compare
BPHYT_RS22555 +0.9 3.1 transcriptional regulator compare
BPHYT_RS22265 +0.9 0.7 hypothetical protein compare
BPHYT_RS06305 +0.9 1.3 small mechanosensitive ion channel protein MscS compare
BPHYT_RS11500 +0.9 1.8 ABC transporter permease compare
BPHYT_RS34025 +0.9 1.0 hypothetical protein compare
BPHYT_RS10175 +0.8 1.0 membrane protein compare
BPHYT_RS10065 +0.8 0.7 cytochrome C oxidase subunit I compare
BPHYT_RS09560 +0.8 2.4 3-hydroxyacyl-CoA dehydrogenase compare
BPHYT_RS01035 +0.8 2.0 cyanate hydratase compare
BPHYT_RS18890 +0.8 3.7 flagellar basal body rod protein FlgC compare
BPHYT_RS27835 +0.8 2.3 polysaccharide deacetylase compare
BPHYT_RS16510 +0.8 1.8 3,4-Dihydroxy-2-butanone 4-phosphate synthase compare
BPHYT_RS00770 +0.8 0.6 conjugal transfer protein TraC compare
BPHYT_RS13450 +0.8 0.9 GntR family transcriptional regulator compare
BPHYT_RS23315 +0.8 0.5 hypothetical protein compare
BPHYT_RS28760 +0.8 2.8 porin compare
BPHYT_RS35500 +0.8 1.5 major facilitator transporter compare
BPHYT_RS07820 +0.8 2.2 hypothetical protein compare
BPHYT_RS23455 +0.8 0.6 phosphorylase compare
BPHYT_RS05780 +0.8 1.0 hypothetical protein compare
BPHYT_RS30505 +0.8 0.9 ABC transporter permease compare
BPHYT_RS22330 +0.8 0.9 PhoB family transcriptional regulator compare
BPHYT_RS23885 +0.8 3.2 ABC transporter permease compare
BPHYT_RS05395 +0.8 0.8 hypothetical protein compare
BPHYT_RS00455 +0.8 2.1 DNA topoisomerase III in PFGI-1-like cluster compare
BPHYT_RS12320 +0.8 2.6 AraC family transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days across organisms