Experiment set32S50 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17680 -7.0 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17690 -6.2 -11.9 imidazole glycerol phosphate synthase compare
BPHYT_RS09500 -5.6 -7.9 glucose-6-phosphate isomerase compare
BPHYT_RS17670 -5.5 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS17715 -4.9 -13.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS03150 -4.8 -14.4 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17685 -4.7 -6.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS12530 -4.7 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS33835 -4.6 -10.3 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33865 -4.6 -10.0 tryptophan synthase alpha chain compare
BPHYT_RS12845 -4.5 -16.6 ATPase compare
BPHYT_RS01595 -4.4 -11.5 homoserine O-acetyltransferase compare
BPHYT_RS33645 -4.3 -3.0 homoserine kinase compare
BPHYT_RS05010 -4.3 -5.9 RpiR family transcriptional regulator compare
BPHYT_RS33875 -4.3 -10.9 tryptophan synthase subunit alpha compare
BPHYT_RS15920 -4.3 -15.4 argininosuccinate synthase compare
BPHYT_RS06545 -4.2 -11.4 acetolactate synthase compare
BPHYT_RS14895 -4.2 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33880 -4.2 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16835 -4.2 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06555 -4.1 -6.7 ketol-acid reductoisomerase compare
BPHYT_RS17855 -3.9 -17.1 glutamate synthase compare
BPHYT_RS08955 -3.9 -5.1 homoserine dehydrogenase compare
BPHYT_RS06610 -3.8 -1.4 triosephosphate isomerase compare
BPHYT_RS14915 -3.8 -7.1 phosphoserine aminotransferase compare
BPHYT_RS04080 -3.7 -5.5 chloride channel protein compare
BPHYT_RS11390 -3.7 -14.2 penicillin-binding protein 1A compare
BPHYT_RS17405 -3.6 -0.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS17395 -3.4 -3.4 anthranilate synthase subunit II compare
BPHYT_RS17675 -3.4 -1.2 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14050 -3.4 -6.0 UDP pyrophosphate phosphatase compare
BPHYT_RS33915 -3.3 -11.0 isopropylmalate isomerase compare
BPHYT_RS13705 -3.3 -3.8 chorismate synthase compare
BPHYT_RS06530 -3.3 -1.1 membrane protein compare
BPHYT_RS02690 -3.2 -13.1 protoheme IX farnesyltransferase compare
BPHYT_RS02590 -3.2 -9.4 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16245 -3.2 -2.1 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS06045 -3.1 -7.9 transaldolase compare
BPHYT_RS17700 -3.0 -4.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS06900 -3.0 -4.9 aspartate aminotransferase compare
BPHYT_RS18320 -3.0 -2.9 orotate phosphoribosyltransferase compare
BPHYT_RS33900 -3.0 -14.8 3-isopropylmalate dehydrogenase compare
BPHYT_RS17885 -3.0 -5.4 3-dehydroquinate synthase compare
BPHYT_RS15075 -3.0 -2.4 dihydrokaempferol 4-reductase compare
BPHYT_RS17400 -2.9 -9.1 anthranilate phosphoribosyltransferase compare
BPHYT_RS01505 -2.9 -2.5 7-cyano-7-deazaguanine reductase compare
BPHYT_RS03400 -2.9 -1.7 ATP-dependent DNA helicase RecG compare
BPHYT_RS14865 -2.9 -1.2 UDP-glucose 6-dehydrogenase compare
BPHYT_RS17945 -2.9 -2.5 cytochrome C biogenesis protein compare
BPHYT_RS12985 -2.9 -1.4 amino acid acetyltransferase compare
BPHYT_RS16735 -2.8 -6.8 phosphogluconate dehydratase compare
BPHYT_RS16905 -2.7 -3.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS09160 -2.7 -4.4 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS15915 -2.7 -11.3 ornithine carbamoyltransferase compare
BPHYT_RS06540 -2.7 -7.5 RNA polymerase sigma70 factor compare
BPHYT_RS02610 -2.7 -4.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS04720 -2.7 -7.2 transcriptional regulator compare
BPHYT_RS16270 -2.6 -2.9 phosphoglycerate kinase compare
BPHYT_RS16210 -2.6 -4.5 peptidase compare
BPHYT_RS08960 -2.5 -1.3 threonine synthase compare
BPHYT_RS12990 -2.5 -2.5 iron transporter compare
BPHYT_RS17390 -2.5 -11.8 anthranilate synthase subunit I compare
BPHYT_RS06975 -2.5 -1.2 glutamate racemase compare
BPHYT_RS12465 -2.5 -1.7 inositol monophosphatase compare
BPHYT_RS04955 -2.5 -1.8 methionyl-tRNA synthetase compare
BPHYT_RS33840 -2.5 -4.8 amidophosphoribosyltransferase compare
BPHYT_RS22190 -2.4 -1.9 nucleoid-structuring protein H-NS compare
BPHYT_RS06155 -2.4 -7.0 DEAD/DEAH box helicase compare
BPHYT_RS12150 -2.4 -14.7 PII uridylyl-transferase compare
BPHYT_RS05025 -2.4 -4.4 sugar ABC transporter substrate-binding protein compare
BPHYT_RS28705 -2.3 -2.2 IclR family transcriptional regulator compare
BPHYT_RS15710 -2.3 -0.9 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06405 -2.3 -4.6 phosphoribosylamine--glycine ligase compare
BPHYT_RS17890 -2.3 -1.3 shikimate kinase compare
BPHYT_RS35885 -2.2 -3.6 hypothetical protein compare
BPHYT_RS06350 -2.2 -1.9 chemotaxis protein CheY compare
BPHYT_RS05020 -2.2 -5.1 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS16430 -2.2 -14.7 cytochrome C compare
BPHYT_RS24285 -2.2 -2.2 TetR family transcriptional regulator compare
BPHYT_RS02860 -2.2 -0.5 membrane protein compare
BPHYT_RS14190 -2.2 -4.4 carbamoyl phosphate synthase large subunit compare
BPHYT_RS33920 -2.1 -6.2 type II citrate synthase compare
BPHYT_RS14910 -2.1 -8.4 chorismate mutase compare
BPHYT_RS33905 -2.1 -1.2 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS05225 -2.1 -9.0 phosphoenolpyruvate carboxylase compare
BPHYT_RS16345 -2.1 -2.9 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS12840 -2.0 -3.8 pyruvate dehydrogenase compare
BPHYT_RS05040 -2.0 -3.8 sugar ABC transporter ATPase compare
BPHYT_RS06075 -2.0 -4.6 hypothetical protein compare
BPHYT_RS06375 -2.0 -3.7 ribonuclease compare
BPHYT_RS10095 -2.0 -2.5 integrase compare
BPHYT_RS14400 -2.0 -3.0 anti-sigma factor compare
BPHYT_RS03110 -2.0 -2.3 MarR family transcriptional regulator compare
BPHYT_RS18970 -2.0 -12.6 chemotaxis protein compare
BPHYT_RS09145 -2.0 -9.4 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS05035 -2.0 -4.8 sugar ABC transporter permease compare
BPHYT_RS16435 -2.0 -11.1 alcohol dehydrogenase compare
BPHYT_RS12590 -1.9 -1.5 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS16340 -1.9 -3.5 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS05030 -1.9 -2.6 sugar ABC transporter permease compare
BPHYT_RS06685 -1.9 -1.2 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS06550 -1.9 -2.1 acetolactate synthase compare
BPHYT_RS03135 -1.8 -7.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02685 -1.7 -6.9 cytochrome C oxidase subunit I compare
BPHYT_RS18895 -1.7 -3.0 flagellar basal body rod protein FlgB compare
BPHYT_RS03640 -1.7 -1.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06410 -1.7 -3.4 transcriptional regulator compare
BPHYT_RS08165 -1.7 -2.6 pilus assembly protein TadE compare
BPHYT_RS14275 -1.7 -2.6 hypothetical protein compare
BPHYT_RS34780 -1.7 -4.4 phytoene synthase compare
BPHYT_RS25780 -1.7 -1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS01500 -1.7 -10.2 7-cyano-7-deazaguanine synthase compare
BPHYT_RS19085 -1.6 -6.0 flagellin compare
BPHYT_RS14185 -1.6 -2.3 transcription elongation factor GreA compare
BPHYT_RS02640 -1.6 -9.5 cytochrome C oxidase compare
BPHYT_RS13245 -1.6 -6.2 hypothetical protein compare
BPHYT_RS33655 -1.6 -4.3 MarR family transcriptional regulator compare
BPHYT_RS24315 -1.6 -1.3 phosphoribosyltransferase compare
BPHYT_RS18795 -1.5 -3.5 flagellar export protein FliJ compare
BPHYT_RS18255 -1.5 -1.6 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS19115 -1.5 -2.5 acyl carrier protein compare
BPHYT_RS02695 -1.5 -4.3 photosynthetic protein synthase I compare
BPHYT_RS06065 -1.5 -7.5 cytochrome C compare
BPHYT_RS08125 -1.5 -6.5 ATPase compare
BPHYT_RS02525 -1.5 -4.8 membrane protein compare
BPHYT_RS14500 -1.5 -2.3 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS14105 -1.5 -8.7 exopolyphosphatase compare
BPHYT_RS12725 -1.5 -8.2 regulator compare
BPHYT_RS18945 -1.5 -7.1 flagellar biosynthesis protein FlhB compare
BPHYT_RS04890 -1.5 -0.8 cobalamin biosynthesis protein CobD compare
BPHYT_RS06070 -1.5 -5.5 cytochrome C compare
BPHYT_RS22360 -1.4 -3.0 response regulator receiver compare
BPHYT_RS24925 -1.4 -1.2 cytochrome O ubiquinol oxidase compare
BPHYT_RS18880 -1.4 -7.9 flagellar hook protein FlgE compare
BPHYT_RS19325 -1.4 -2.6 glycine cleavage system H protein compare
BPHYT_RS19130 -1.4 -3.7 acetyltransferase compare
BPHYT_RS18860 -1.4 -4.5 flagellar P-ring protein FlgI compare
BPHYT_RS17975 -1.4 -3.4 cytochrome C biogenesis protein compare
BPHYT_RS30140 -1.4 -1.4 3-methylitaconate isomerase compare
BPHYT_RS14900 -1.4 -1.9 prephenate dehydrogenase compare
BPHYT_RS18995 -1.4 -4.7 purine-binding chemotaxis protein compare
BPHYT_RS18840 -1.4 -6.2 flagellar hook-associated protein FlgL compare
BPHYT_RS19105 -1.4 -7.1 aminotransferase compare
BPHYT_RS19110 -1.4 -5.2 3-oxoacyl-ACP synthase compare
BPHYT_RS02905 -1.4 -10.2 RNA polymerase subunit sigma-54 compare
BPHYT_RS09330 -1.4 -7.9 phytoene synthase compare
BPHYT_RS33580 -1.4 -2.3 geranyltranstransferase compare
BPHYT_RS01510 -1.4 -6.5 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS12940 -1.3 -6.4 signal transduction histidine kinase compare
BPHYT_RS10635 -1.3 -2.6 transcriptional regulator compare
BPHYT_RS16290 -1.3 -1.0 hypothetical protein compare
BPHYT_RS11825 -1.3 -0.6 cytosine deaminase compare
BPHYT_RS05490 -1.3 -3.9 porin compare
BPHYT_RS23600 -1.3 -2.4 hypothetical protein compare
BPHYT_RS04950 -1.3 -7.1 hypothetical protein compare
BPHYT_RS00815 -1.3 -1.6 hypothetical protein compare
BPHYT_RS19000 -1.3 -5.1 chemotaxis protein CheA compare
BPHYT_RS34810 -1.3 -3.3 RND transporter compare
BPHYT_RS27155 -1.3 -1.7 peroxiredoxin compare
BPHYT_RS09390 -1.3 -2.3 ABC transporter permease compare
BPHYT_RS18925 -1.3 -4.6 RNA polymerase sigma70 compare
BPHYT_RS05155 -1.3 -4.0 acetyltransferase GCN5 compare
BPHYT_RS18260 -1.3 -4.7 phenylacetic acid degradation protein compare
BPHYT_RS23875 -1.3 -1.0 sugar ABC transporter ATP-binding protein compare
BPHYT_RS24580 -1.3 -1.6 hypothetical protein compare
BPHYT_RS29550 -1.3 -3.3 RND transporter compare
BPHYT_RS34800 -1.2 -1.3 thioesterase compare
BPHYT_RS28535 -1.2 -1.0 response regulator receiver compare
BPHYT_RS30825 -1.2 -2.3 extradiol dioxygenase compare
BPHYT_RS01530 -1.2 -2.6 penicillin-binding protein 2 compare
BPHYT_RS02675 -1.2 -5.3 hypothetical protein compare
BPHYT_RS12280 -1.2 -1.1 RNA helicase compare
BPHYT_RS03155 -1.2 -3.3 histidine triad (HIT) protein compare
BPHYT_RS18705 -1.2 -1.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS36060 -1.2 -3.4 hypothetical protein compare
BPHYT_RS00020 -1.2 -3.3 PAAR compare
BPHYT_RS19585 -1.2 -4.5 cobalamin biosynthesis protein CobW compare
BPHYT_RS06345 -1.2 -5.0 sensor histidine kinase compare
BPHYT_RS20095 -1.2 -0.7 transcriptional regulator compare
BPHYT_RS28405 -1.2 -2.9 membrane protein compare
BPHYT_RS18900 -1.2 -6.9 flagella basal body P-ring formation protein FlgA compare
BPHYT_RS08565 -1.2 -0.4 dihydroorotate dehydrogenase compare
BPHYT_RS06190 -1.2 -1.9 heptosyltransferase compare
BPHYT_RS00980 -1.2 -1.1 GCN5 family acetyltransferase compare
BPHYT_RS24500 -1.2 -1.1 histidine kinase compare
BPHYT_RS26550 -1.2 -1.6 Fis family transcriptional regulator compare
BPHYT_RS08385 -1.2 -1.4 secretion protein compare
BPHYT_RS25830 -1.2 -2.0 sugar ABC transporter substrate-binding protein compare
BPHYT_RS21385 -1.2 -1.7 short-chain dehydrogenase compare
BPHYT_RS06730 -1.2 -1.3 MaoC family dehydratase compare
BPHYT_RS30565 -1.2 -3.4 dihydropteridine reductase compare
BPHYT_RS20790 -1.2 -1.3 TetR family transcriptional regulator compare
BPHYT_RS14920 -1.2 -1.1 hypothetical protein compare
BPHYT_RS14505 -1.2 -1.8 membrane protein compare
BPHYT_RS09620 -1.2 -2.2 aminodeoxychorismate lyase compare
BPHYT_RS08545 -1.2 -1.3 oxidoreductase compare
BPHYT_RS18845 -1.2 -6.3 flagellar hook-associated protein FlgK compare
BPHYT_RS04905 -1.2 -2.1 quinol oxidase compare
BPHYT_RS23910 -1.2 -1.6 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS22940 -1.2 -1.4 pilus assembly protein TadE compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days across organisms