Experiment set32S50 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS32595 +3.0 1.1 hypothetical protein compare
BPHYT_RS29085 +2.8 1.9 LysR family transcriptional regulator compare
BPHYT_RS28860 +2.7 1.0 haloacid dehalogenase compare
BPHYT_RS17030 +2.7 0.9 lipid hydroperoxide peroxidase compare
BPHYT_RS27175 +2.6 0.9 DNA-binding protein compare
BPHYT_RS25110 +2.4 1.0 sarcosine oxidase subunit delta compare
BPHYT_RS34765 +2.3 1.3 chemotaxis protein compare
BPHYT_RS07665 +2.3 2.2 hypothetical protein compare
BPHYT_RS14585 +2.2 1.3 hypothetical protein compare
BPHYT_RS09650 +2.2 1.8 hypothetical protein compare
BPHYT_RS13105 +2.2 2.7 LacI family transcription regulator compare
BPHYT_RS20210 +2.1 1.8 antibiotic biosynthesis monooxygenase compare
BPHYT_RS21485 +2.1 0.9 hypothetical protein compare
BPHYT_RS35310 +2.1 1.5 GCN5 family N-acetyltransferase compare
BPHYT_RS26080 +2.1 0.9 ABC transporter ATPase compare
BPHYT_RS35560 +2.1 1.7 endoribonuclease L-PSP compare
BPHYT_RS30420 +2.1 2.5 transcriptional regulator compare
BPHYT_RS35495 +2.0 1.3 nucleotide pyrophosphohydrolase compare
BPHYT_RS04010 +2.0 1.1 glycosyl transferase compare
BPHYT_RS00295 +2.0 2.0 hypothetical protein compare
BPHYT_RS05620 +1.9 1.2 CsbD family protein compare
BPHYT_RS30010 +1.9 1.2 cell division protein compare
BPHYT_RS27295 +1.9 1.3 hypothetical protein compare
BPHYT_RS13040 +1.8 1.0 hypothetical protein compare
BPHYT_RS23675 +1.8 1.4 lysine transporter LysE compare
BPHYT_RS01165 +1.7 2.2 hypothetical protein compare
BPHYT_RS18445 +1.7 3.6 hypothetical protein compare
BPHYT_RS16390 +1.7 1.9 MarR family transcriptional regulator compare
BPHYT_RS07480 +1.7 1.0 FAD-dependent oxidoreductase compare
BPHYT_RS08190 +1.7 1.2 type II secretion system protein compare
BPHYT_RS22860 +1.7 0.9 chemotaxis protein CheY compare
BPHYT_RS13390 +1.7 0.8 IclR family transcriptional regulator compare
BPHYT_RS35955 +1.6 1.0 hypothetical protein compare
BPHYT_RS05880 +1.6 1.5 hypothetical protein compare
BPHYT_RS10645 +1.6 1.1 cyanate hydratase compare
BPHYT_RS14370 +1.6 1.7 ribonuclease III compare
BPHYT_RS11745 +1.6 0.8 (2Fe-2S)-binding protein compare
BPHYT_RS31400 +1.6 0.7 methyl-accepting chemotaxis protein compare
BPHYT_RS26385 +1.6 1.2 glutamine amidotransferase compare
BPHYT_RS02600 +1.6 1.1 glutaredoxin compare
BPHYT_RS25140 +1.6 0.7 hypothetical protein compare
BPHYT_RS29920 +1.5 0.6 hypothetical protein compare
BPHYT_RS08665 +1.5 0.8 hypothetical protein compare
BPHYT_RS30810 +1.5 1.2 transcriptional regulator compare
BPHYT_RS12550 +1.5 0.5 GTP-binding protein HflX compare
BPHYT_RS30465 +1.5 0.5 short-chain dehydrogenase compare
BPHYT_RS19270 +1.5 2.1 hypothetical protein compare
BPHYT_RS19895 +1.5 1.3 rod shape-determining protein RodA compare
BPHYT_RS31635 +1.5 1.1 choline dehydrogenase compare
BPHYT_RS33015 +1.5 1.0 hypothetical protein compare
BPHYT_RS07145 +1.5 0.8 DNA-binding protein compare
BPHYT_RS28595 +1.5 1.0 glyoxalase compare
BPHYT_RS13345 +1.4 2.4 crotonase compare
BPHYT_RS06305 +1.4 2.0 small mechanosensitive ion channel protein MscS compare
BPHYT_RS33150 +1.4 0.8 beta-lactamase compare
BPHYT_RS29100 +1.4 1.1 ketosteroid isomerase compare
BPHYT_RS08525 +1.4 0.6 SAM-dependent methyltransferase compare
BPHYT_RS23955 +1.4 1.7 LysR family transcriptional regulator compare
BPHYT_RS34530 +1.4 1.1 LysR family transcriptional regulator compare
BPHYT_RS23030 +1.4 0.7 gluconate 2-dehydrogenase compare
BPHYT_RS07050 +1.4 0.8 membrane protein compare
BPHYT_RS05300 +1.4 2.6 polyketide cyclase compare
BPHYT_RS11965 +1.3 1.6 alkylhydroperoxidase compare
BPHYT_RS33155 +1.3 1.0 hypothetical protein compare
BPHYT_RS08505 +1.3 3.4 hypothetical protein compare
BPHYT_RS04920 +1.3 1.7 aspartate 1-decarboxylase compare
BPHYT_RS00855 +1.3 1.2 hypothetical protein compare
BPHYT_RS31650 +1.3 1.0 FAD-binding protein compare
BPHYT_RS24210 +1.3 2.5 urea transporter compare
BPHYT_RS36400 +1.3 0.7 hypothetical protein compare
BPHYT_RS18760 +1.3 1.1 flagellar biosynthesis protein FliT compare
BPHYT_RS30505 +1.3 1.4 ABC transporter permease compare
BPHYT_RS08600 +1.3 1.1 hypothetical protein compare
BPHYT_RS28365 +1.3 1.3 Germin subfamily 1 member 15 compare
BPHYT_RS34730 +1.2 1.7 hypothetical protein compare
BPHYT_RS30085 +1.2 0.8 hypothetical protein compare
BPHYT_RS28305 +1.2 0.8 protein tyrosine phosphatase compare
BPHYT_RS10535 +1.2 2.5 DSBA oxidoreductase compare
BPHYT_RS04560 +1.2 1.3 Hcp1 family type VI secretion system effector compare
BPHYT_RS32200 +1.2 1.9 lytic transglycosylase compare
BPHYT_RS19565 +1.2 6.0 gamma-glutamyl:cysteine ligase compare
BPHYT_RS30485 +1.2 0.9 ABC transporter ATP-binding protein compare
BPHYT_RS07585 +1.2 2.1 N-formylglutamate deformylase (EC 3.5.1.68) (from data) compare
BPHYT_RS22260 +1.2 1.2 hypothetical protein compare
BPHYT_RS11485 +1.2 2.1 6-phosphogluconate dehydrogenase compare
BPHYT_RS23170 +1.2 1.5 XRE family transcriptional regulator compare
BPHYT_RS20060 +1.2 0.8 hypothetical protein compare
BPHYT_RS24185 +1.2 2.8 C4-dicarboxylate ABC transporter permease compare
BPHYT_RS34500 +1.2 2.0 hypothetical protein compare
BPHYT_RS28830 +1.2 0.6 LysR family transcriptional regulator compare
BPHYT_RS27305 +1.2 0.7 hypothetical protein compare
BPHYT_RS02765 +1.2 0.5 cytochrome BD oxidase subunit I compare
BPHYT_RS04140 +1.2 1.9 polysaccharide biosynthesis protein compare
BPHYT_RS30890 +1.2 0.9 hypothetical protein compare
BPHYT_RS10740 +1.2 0.8 LuxR family transcriptional regulator compare
BPHYT_RS00455 +1.2 2.7 DNA topoisomerase III in PFGI-1-like cluster compare
BPHYT_RS15260 +1.1 1.0 chorismate mutase compare
BPHYT_RS26355 +1.1 1.0 hypothetical protein compare
BPHYT_RS26185 +1.1 0.6 thioesterase compare
BPHYT_RS24395 +1.1 1.9 type VI secretion protein compare
BPHYT_RS33990 +1.1 0.5 ATPase compare
BPHYT_RS29695 +1.1 0.8 hypothetical protein compare
BPHYT_RS05945 +1.1 3.9 chromate transporter compare
BPHYT_RS08705 +1.1 1.9 hypothetical protein compare
BPHYT_RS30255 +1.1 2.3 hypothetical protein compare
BPHYT_RS32830 +1.1 1.7 AraC family transcriptional regulator compare
BPHYT_RS09910 +1.1 1.5 tyramine oxidase compare
BPHYT_RS18420 +1.1 1.9 hypothetical protein compare
BPHYT_RS32270 +1.1 1.7 transposase compare
BPHYT_RS11005 +1.1 1.3 chromate transporter compare
BPHYT_RS27195 +1.1 1.3 LacI family transcriptional regulator compare
BPHYT_RS22485 +1.1 2.5 NADP-dependent aryl-alcohol dehydrogenase compare
BPHYT_RS21925 +1.1 1.5 formimidoylglutamase compare
BPHYT_RS07570 +1.1 0.7 hypothetical protein compare
BPHYT_RS12050 +1.0 1.5 hypothetical protein compare
BPHYT_RS25645 +1.0 1.1 dehydrogenase compare
BPHYT_RS25295 +1.0 0.7 cobalt transporter compare
BPHYT_RS21715 +1.0 1.0 taurine ABC transporter permease compare
BPHYT_RS07130 +1.0 0.7 biopolymer transporter ExbD compare
BPHYT_RS01230 +1.0 2.1 DNA-binding protein compare
BPHYT_RS34320 +1.0 1.7 DNA-binding protein compare
BPHYT_RS35735 +1.0 1.1 nitroreductase compare
BPHYT_RS22265 +1.0 0.8 hypothetical protein compare
BPHYT_RS11060 +1.0 0.8 4-hydroxybenzoate 3-monooxygenase compare
BPHYT_RS09690 +1.0 0.7 phosphate starvation-inducible protein PsiF compare
BPHYT_RS22295 +1.0 0.7 LysR family transcriptional regulator compare
BPHYT_RS02770 +1.0 1.3 membrane protein compare
BPHYT_RS23215 +1.0 3.3 transcriptional regulator compare
BPHYT_RS27890 +1.0 0.5 hypothetical protein compare
BPHYT_RS29450 +1.0 1.0 phosphonate metabolism protein compare
BPHYT_RS17805 +1.0 1.5 hypothetical protein compare
BPHYT_RS35115 +1.0 1.6 phospholipase C compare
BPHYT_RS28910 +1.0 1.5 diguanylate phosphodiesterase compare
BPHYT_RS19985 +1.0 0.6 CoA-transferase compare
BPHYT_RS25655 +1.0 1.1 short-chain dehydrogenase compare
BPHYT_RS28215 +1.0 0.6 D-ribose transporter ATP binding protein compare
BPHYT_RS32785 +1.0 2.5 membrane protein compare
BPHYT_RS07920 +1.0 1.0 hypothetical protein compare
BPHYT_RS03190 +1.0 1.7 FmdB family transcriptional regulator compare
BPHYT_RS07395 +1.0 1.8 glycoside hydrolase compare
BPHYT_RS34700 +1.0 2.1 arsenate reductase compare
BPHYT_RS30855 +1.0 2.2 sugar ABC transporter substrate-binding protein compare
BPHYT_RS34370 +1.0 2.6 ATPase compare
BPHYT_RS09755 +1.0 1.0 glycosyl transferase family 1 compare
BPHYT_RS20775 +1.0 1.1 3-ketoacyl-ACP reductase compare
BPHYT_RS30440 +1.0 1.5 short-chain dehydrogenase compare
BPHYT_RS13130 +1.0 0.5 metallophosphatase compare
BPHYT_RS21960 +1.0 3.6 nucleoside transporter compare
BPHYT_RS28635 +1.0 1.4 hypothetical protein compare
BPHYT_RS26880 +1.0 0.9 ketosteroid isomerase compare
BPHYT_RS01660 +1.0 1.0 hypothetical protein compare
BPHYT_RS07060 +1.0 1.8 aldo/keto reductase compare
BPHYT_RS29150 +0.9 1.4 lysine transporter LysE compare
BPHYT_RS26380 +0.9 0.9 cobalamin biosynthesis protein CobT compare
BPHYT_RS35750 +0.9 1.0 hypothetical protein compare
BPHYT_RS03480 +0.9 3.3 ferritin compare
BPHYT_RS10355 +0.9 1.0 nitrate reductase compare
BPHYT_RS05780 +0.9 1.4 hypothetical protein compare
BPHYT_RS21215 +0.9 2.1 Crp/Fnr family transcriptional regulator compare
BPHYT_RS16505 +0.9 2.0 HAD family hydrolase compare
BPHYT_RS13470 +0.9 0.6 arylsulfate sulfotransferase compare
BPHYT_RS24590 +0.9 0.5 DeoR faimly transcriptional regulator compare
BPHYT_RS30020 +0.9 1.7 arsenic transporter compare
BPHYT_RS12820 +0.9 3.8 D-alanyl-D-alanine carboxypeptidase compare
BPHYT_RS05255 +0.9 1.4 phage abortive infection protein compare
BPHYT_RS36140 +0.9 1.1 hypothetical protein compare
BPHYT_RS33745 +0.9 1.7 metallophosphoesterase compare
BPHYT_RS28660 +0.9 0.9 polyvinylalcohol dehydrogenase compare
BPHYT_RS26965 +0.9 0.6 L-lactate dehydrogenase, LldG subunit (from data) compare
BPHYT_RS24005 +0.9 1.6 L-histidine ABC transporter, permease component 1 (from data) compare
BPHYT_RS00690 +0.9 0.5 transcriptional regulator compare
BPHYT_RS35090 +0.9 2.4 diaminopimelate decarboxylase compare
BPHYT_RS31020 +0.9 1.2 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BPHYT_RS07160 +0.9 3.1 ABC transporter permease compare
BPHYT_RS26010 +0.9 1.5 ABC transporter substrate-binding protein compare
BPHYT_RS22165 +0.9 1.6 hypothetical protein compare
BPHYT_RS18465 +0.9 4.5 membrane protein compare
BPHYT_RS11050 +0.9 0.7 molecular chaperone compare
BPHYT_RS30830 +0.9 2.4 MFS transporter compare
BPHYT_RS13510 +0.9 2.8 C4-dicarboxylate transporter compare
BPHYT_RS22835 +0.9 0.7 flagellar motor protein MotA compare
BPHYT_RS09900 +0.9 2.7 aldehyde dehydrogenase compare
BPHYT_RS22525 +0.9 1.8 dioxygenase compare
BPHYT_RS24075 +0.9 1.8 ATPase compare
BPHYT_RS04335 +0.9 0.7 membrane protein compare
BPHYT_RS06385 +0.9 2.4 ribosomal RNA large subunit methyltransferase H compare
BPHYT_RS03385 +0.9 1.9 DeoR family transcriptional regulator compare
BPHYT_RS20115 +0.9 1.2 transcriptional regulator compare
BPHYT_RS25660 +0.9 2.1 MFS transporter compare
BPHYT_RS19235 +0.9 2.2 hypothetical protein compare
BPHYT_RS35500 +0.9 1.9 major facilitator transporter compare
BPHYT_RS09890 +0.9 1.5 choline dehydrogenase compare
BPHYT_RS34165 +0.9 2.0 hypothetical protein compare
BPHYT_RS28185 +0.9 1.5 lipase compare
BPHYT_RS05815 +0.9 3.3 hypothetical protein compare
BPHYT_RS30120 +0.9 1.3 heavy metal transporter compare
BPHYT_RS20440 +0.9 0.7 IclR family transcriptional regulator compare
BPHYT_RS00750 +0.9 1.4 SpoVT/AbrB domain-containing protein compare
BPHYT_RS23010 +0.9 2.0 transcriptional regulator compare
BPHYT_RS10175 +0.8 0.8 membrane protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days across organisms