Experiment set32S2 for Burkholderia phytofirmans PsJN

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -5.5 -15.4 imidazole glycerol phosphate synthase compare
BPHYT_RS03150 -5.1 -17.6 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS15920 -5.0 -19.0 argininosuccinate synthase compare
BPHYT_RS17680 -4.7 -4.8 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17685 -4.4 -8.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33880 -4.3 -11.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS12845 -4.1 -15.9 ATPase compare
BPHYT_RS06610 -4.0 -1.6 triosephosphate isomerase compare
BPHYT_RS14915 -4.0 -8.8 phosphoserine aminotransferase compare
BPHYT_RS14895 -3.9 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS08955 -3.8 -6.6 homoserine dehydrogenase compare
BPHYT_RS17405 -3.8 -1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS17890 -3.8 -1.8 shikimate kinase compare
BPHYT_RS06555 -3.8 -7.9 ketol-acid reductoisomerase compare
BPHYT_RS33645 -3.7 -4.8 homoserine kinase compare
BPHYT_RS16835 -3.7 -7.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS06545 -3.7 -11.7 acetolactate synthase compare
BPHYT_RS11390 -3.7 -13.0 penicillin-binding protein 1A compare
BPHYT_RS33865 -3.6 -9.6 tryptophan synthase alpha chain compare
BPHYT_RS13705 -3.5 -6.4 chorismate synthase compare
BPHYT_RS17855 -3.5 -18.3 glutamate synthase compare
BPHYT_RS01595 -3.4 -14.0 homoserine O-acetyltransferase compare
BPHYT_RS12530 -3.4 -5.7 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS17670 -3.4 -5.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS15915 -3.4 -14.5 ornithine carbamoyltransferase compare
BPHYT_RS33875 -3.4 -10.6 tryptophan synthase subunit alpha compare
BPHYT_RS17715 -3.3 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS08960 -3.3 -1.5 threonine synthase compare
BPHYT_RS33835 -3.3 -9.3 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS16270 -3.2 -3.3 phosphoglycerate kinase compare
BPHYT_RS17395 -3.2 -4.3 anthranilate synthase subunit II compare
BPHYT_RS17700 -3.2 -5.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS12985 -3.1 -1.7 amino acid acetyltransferase compare
BPHYT_RS09500 -3.1 -9.8 glucose-6-phosphate isomerase compare
BPHYT_RS02590 -3.1 -10.7 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS22190 -3.1 -2.6 nucleoid-structuring protein H-NS compare
BPHYT_RS18320 -3.1 -4.1 orotate phosphoribosyltransferase compare
BPHYT_RS02690 -3.0 -13.7 protoheme IX farnesyltransferase compare
BPHYT_RS33840 -3.0 -2.9 amidophosphoribosyltransferase compare
BPHYT_RS14050 -2.8 -6.5 UDP pyrophosphate phosphatase compare
BPHYT_RS17400 -2.8 -9.6 anthranilate phosphoribosyltransferase compare
BPHYT_RS06900 -2.8 -4.8 aspartate aminotransferase compare
BPHYT_RS02610 -2.8 -5.9 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33920 -2.8 -6.9 type II citrate synthase compare
BPHYT_RS35885 -2.7 -4.7 hypothetical protein compare
BPHYT_RS06975 -2.7 -1.4 glutamate racemase compare
BPHYT_RS17885 -2.7 -6.5 3-dehydroquinate synthase compare
BPHYT_RS33915 -2.6 -11.0 isopropylmalate isomerase compare
BPHYT_RS14190 -2.6 -4.2 carbamoyl phosphate synthase large subunit compare
BPHYT_RS17390 -2.6 -14.8 anthranilate synthase subunit I compare
BPHYT_RS16735 -2.5 -5.8 phosphogluconate dehydratase compare
BPHYT_RS15710 -2.5 -1.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS06045 -2.5 -9.1 transaldolase compare
BPHYT_RS14400 -2.5 -4.4 anti-sigma factor compare
BPHYT_RS17945 -2.5 -3.0 cytochrome C biogenesis protein compare
BPHYT_RS04080 -2.5 -5.1 chloride channel protein compare
BPHYT_RS32260 -2.4 -1.4 hypothetical protein compare
BPHYT_RS18970 -2.4 -16.6 chemotaxis protein compare
BPHYT_RS16905 -2.4 -4.0 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS02860 -2.4 -0.6 membrane protein compare
BPHYT_RS14910 -2.4 -11.3 chorismate mutase compare
BPHYT_RS12465 -2.4 -2.0 inositol monophosphatase compare
BPHYT_RS16245 -2.4 -2.9 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS09160 -2.3 -4.3 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS05010 -2.3 -4.9 RpiR family transcriptional regulator compare
BPHYT_RS04955 -2.3 -2.1 methionyl-tRNA synthetase compare
BPHYT_RS12990 -2.2 -4.0 iron transporter compare
BPHYT_RS17265 -2.2 -1.4 cell division protein compare
BPHYT_RS04720 -2.2 -6.2 transcriptional regulator compare
BPHYT_RS33900 -2.2 -11.0 3-isopropylmalate dehydrogenase compare
BPHYT_RS02525 -2.2 -7.2 membrane protein compare
BPHYT_RS16430 -2.2 -15.7 cytochrome C compare
BPHYT_RS06530 -2.2 -1.5 membrane protein compare
BPHYT_RS06410 -2.1 -3.8 transcriptional regulator compare
BPHYT_RS06540 -2.1 -7.4 RNA polymerase sigma70 factor compare
BPHYT_RS02640 -2.1 -13.7 cytochrome C oxidase compare
BPHYT_RS36220 -2.1 -1.4 hypothetical protein compare
BPHYT_RS09145 -2.1 -9.2 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS04335 -2.0 -1.2 membrane protein compare
BPHYT_RS12150 -2.0 -13.2 PII uridylyl-transferase compare
BPHYT_RS16435 -2.0 -13.1 alcohol dehydrogenase compare
BPHYT_RS03400 -2.0 -1.6 ATP-dependent DNA helicase RecG compare
BPHYT_RS28705 -1.9 -2.4 IclR family transcriptional regulator compare
BPHYT_RS19000 -1.9 -7.7 chemotaxis protein CheA compare
BPHYT_RS12840 -1.9 -4.0 pyruvate dehydrogenase compare
BPHYT_RS14275 -1.9 -3.4 hypothetical protein compare
BPHYT_RS06405 -1.9 -3.3 phosphoribosylamine--glycine ligase compare
BPHYT_RS06070 -1.9 -9.2 cytochrome C compare
BPHYT_RS06075 -1.9 -8.2 hypothetical protein compare
BPHYT_RS17675 -1.9 -1.3 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS13245 -1.8 -6.3 hypothetical protein compare
BPHYT_RS02955 -1.8 -7.7 formyltetrahydrofolate deformylase compare
BPHYT_RS03640 -1.8 -1.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16345 -1.8 -3.0 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS06685 -1.8 -1.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS16210 -1.8 -3.6 peptidase compare
BPHYT_RS17520 -1.8 -4.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS02685 -1.7 -6.2 cytochrome C oxidase subunit I compare
BPHYT_RS06600 -1.7 -2.0 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS06065 -1.7 -8.8 cytochrome C compare
BPHYT_RS18765 -1.7 -4.8 flagellar biosynthesis protein FliS compare
BPHYT_RS14900 -1.7 -2.6 prephenate dehydrogenase compare
BPHYT_RS06155 -1.7 -6.7 DEAD/DEAH box helicase compare
BPHYT_RS13835 -1.7 -1.6 S-adenosylhomocysteine nucleosidase compare
BPHYT_RS00980 -1.7 -1.6 GCN5 family acetyltransferase compare
BPHYT_RS09860 -1.7 -1.3 pilus assembly protein PilP compare
BPHYT_RS19130 -1.6 -5.0 acetyltransferase compare
BPHYT_RS33655 -1.6 -5.0 MarR family transcriptional regulator compare
BPHYT_RS19085 -1.6 -7.0 flagellin compare
BPHYT_RS18995 -1.6 -5.1 purine-binding chemotaxis protein compare
BPHYT_RS19115 -1.6 -2.1 acyl carrier protein compare
BPHYT_RS05155 -1.6 -5.1 acetyltransferase GCN5 compare
BPHYT_RS16340 -1.6 -4.0 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS00690 -1.5 -0.7 transcriptional regulator compare
BPHYT_RS12725 -1.5 -9.3 regulator compare
BPHYT_RS33580 -1.5 -2.7 geranyltranstransferase compare
BPHYT_RS01960 -1.5 -3.0 cytochrome C compare
BPHYT_RS18980 -1.5 -7.7 chemotaxis protein CheR compare
BPHYT_RS08125 -1.5 -8.0 ATPase compare
BPHYT_RS22360 -1.5 -2.5 response regulator receiver compare
BPHYT_RS01455 -1.5 -0.7 peptide deformylase compare
BPHYT_RS34780 -1.5 -5.1 phytoene synthase compare
BPHYT_RS19110 -1.5 -7.0 3-oxoacyl-ACP synthase compare
BPHYT_RS12615 -1.5 -1.0 dihydrodipicolinate synthase compare
BPHYT_RS05225 -1.5 -8.2 phosphoenolpyruvate carboxylase compare
BPHYT_RS23910 -1.5 -2.0 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS05030 -1.5 -2.6 sugar ABC transporter permease compare
BPHYT_RS06190 -1.4 -2.4 heptosyltransferase compare
BPHYT_RS15075 -1.4 -2.1 dihydrokaempferol 4-reductase compare
BPHYT_RS05035 -1.4 -4.3 sugar ABC transporter permease compare
BPHYT_RS09330 -1.4 -8.3 phytoene synthase compare
BPHYT_RS02665 -1.4 -5.9 MFS transporter compare
BPHYT_RS10345 -1.4 -1.5 flagellar motor protein MotB compare
BPHYT_RS14185 -1.4 -2.5 transcription elongation factor GreA compare
BPHYT_RS02675 -1.4 -5.7 hypothetical protein compare
BPHYT_RS00815 -1.4 -1.9 hypothetical protein compare
BPHYT_RS05040 -1.4 -4.2 sugar ABC transporter ATPase compare
BPHYT_RS08565 -1.4 -0.5 dihydroorotate dehydrogenase compare
BPHYT_RS09480 -1.4 -0.5 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS05020 -1.4 -4.3 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS33155 -1.3 -1.0 hypothetical protein compare
BPHYT_RS25780 -1.3 -1.2 DeoR faimly transcriptional regulator compare
BPHYT_RS06350 -1.3 -1.9 chemotaxis protein CheY compare
BPHYT_RS12900 -1.3 -1.7 transposase compare
BPHYT_RS02180 -1.3 -1.8 hypothetical protein compare
BPHYT_RS29540 -1.3 -1.7 aldolase compare
BPHYT_RS04285 -1.3 -1.1 rhamnosyltransferase compare
BPHYT_RS36060 -1.3 -6.1 hypothetical protein compare
BPHYT_RS12940 -1.3 -6.1 signal transduction histidine kinase compare
BPHYT_RS05025 -1.3 -3.4 sugar ABC transporter substrate-binding protein compare
BPHYT_RS02650 -1.3 -1.2 membrane protein compare
BPHYT_RS33905 -1.3 -1.1 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06375 -1.3 -3.3 ribonuclease compare
BPHYT_RS14105 -1.2 -8.1 exopolyphosphatase compare
BPHYT_RS03830 -1.2 -2.0 hypothetical protein compare
BPHYT_RS04940 -1.2 -3.1 hypothetical protein compare
BPHYT_RS13890 -1.2 -2.5 RpiR family transcriptional regulator compare
BPHYT_RS30565 -1.2 -4.0 dihydropteridine reductase compare
BPHYT_RS06550 -1.2 -1.5 acetolactate synthase compare
BPHYT_RS27805 -1.2 -2.6 RNA-metabolising metallo-beta-lactamase compare
BPHYT_RS25955 -1.2 -1.1 transcriptional regulator compare
BPHYT_RS10850 -1.2 -1.2 LysR family transcriptional regulator compare
BPHYT_RS20155 -1.2 -1.0 hypothetical protein compare
BPHYT_RS01530 -1.2 -3.0 penicillin-binding protein 2 compare
BPHYT_RS02655 -1.2 -3.5 cytochrome C oxidase assembly protein compare
BPHYT_RS01630 -1.2 -1.9 ATP-dependent protease ATPase subunit HslU compare
BPHYT_RS28240 -1.2 -3.2 L-rhamnonate dehydratase compare
BPHYT_RS02680 -1.2 -6.9 cytochrome C oxidase subunit I compare
BPHYT_RS23230 -1.2 -0.8 histidine kinase compare
BPHYT_RS18985 -1.2 -2.8 hypothetical protein compare
BPHYT_RS04950 -1.2 -6.7 hypothetical protein compare
BPHYT_RS19105 -1.2 -5.6 aminotransferase compare
BPHYT_RS21340 -1.2 -2.7 2OG-Fe(II) oxygenase compare
BPHYT_RS28690 -1.2 -2.0 diguanylate phosphodiesterase compare
BPHYT_RS01950 -1.2 -2.8 phosphoheptose isomerase compare
BPHYT_RS04455 -1.2 -1.0 glycosyl transferase compare
BPHYT_RS16180 -1.1 -0.6 TetR family transcriptional regulator compare
BPHYT_RS08945 -1.1 -4.7 hypothetical protein compare
BPHYT_RS12055 -1.1 -8.0 phosphoenolpyruvate synthase compare
BPHYT_RS14865 -1.1 -0.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS24285 -1.1 -1.5 TetR family transcriptional regulator compare
BPHYT_RS17075 -1.1 -3.2 ABC transporter permease compare
BPHYT_RS23570 -1.1 -3.8 chemotaxis protein CheY compare
BPHYT_RS15620 -1.1 -2.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS19120 -1.1 -4.5 3-oxoacyl-ACP synthase compare
BPHYT_RS19010 -1.1 -4.6 flagellar motor protein MotB compare
BPHYT_RS15305 -1.1 -4.4 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS10095 -1.1 -1.2 integrase compare
BPHYT_RS08965 -1.1 -2.3 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS27720 -1.1 -1.6 hypothetical protein compare
BPHYT_RS02635 -1.1 -5.7 membrane protein compare
BPHYT_RS12855 -1.1 -2.0 hypothetical protein compare
BPHYT_RS09315 -1.1 -0.4 chemotaxis protein CheY compare
BPHYT_RS03280 -1.1 -1.1 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS09515 -1.1 -0.7 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS28675 -1.1 -2.7 hypothetical protein compare
BPHYT_RS22855 -1.1 -2.9 aldehyde-activating protein compare
BPHYT_RS14920 -1.1 -1.7 hypothetical protein compare
BPHYT_RS33690 -1.1 -1.4 molybdate ABC transporter permease compare
BPHYT_RS15415 -1.0 -6.0 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days in Burkholderia phytofirmans PsJN

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days across organisms