Experiment set32S142 for Bacteroides thetaiotaomicron VPI-5482
L-Asparagine nitrogen source; Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen
Group: nitrogen sourceMedia: Varel_Bryant_medium_Glucose_noMET_DTT_NaS_B12_noNitrogen + L-Asparagine (10 mM)
Culturing: Btheta_ML6a, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Surya Tripathi on 3/20/24
Media components: 15 uM Hemin, 15 uM Iron (II) sulfate heptahydrate, 3 mM Dithiothreitol, 23.8 mM Sodium bicarbonate, 20 mM D-Glucose, 3 mM Sodium sulfide nonahydrate, 0.1 ng/L Cyanocobalamin, Mineral 3B solution minus Nitrogen (6.6 mM Potassium phosphate monobasic, 15.4 mM Sodium Chloride, 98 uM Magnesium chloride hexahydrate, 176.5 uM Calcium chloride dihydrate, 4.2 uM Cobalt chloride hexahydrate, 50.5 uM Manganese (II) chloride tetrahydrate, 1.75 mM Sodium sulfate)
Specific Phenotypes
For 4 genes in this experiment
For nitrogen source L-Asparagine in Bacteroides thetaiotaomicron VPI-5482
For nitrogen source L-Asparagine across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Cysteine Biosynthesis | 1 |
| L-rhamnose utilization | 1 |
| Methionine Biosynthesis | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose and glucuronate interconversions
- Fructose and mannose metabolism
- Cysteine metabolism
- Selenoamino acid metabolism
- Sulfur metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-cysteine biosynthesis I | 2 | 2 | 1 |
| L-rhamnose degradation I | 5 | 5 | 1 |
| seleno-amino acid biosynthesis (plants) | 5 | 2 | 1 |
| superpathway of sulfate assimilation and cysteine biosynthesis | 9 | 7 | 1 |
| superpathway of fucose and rhamnose degradation | 12 | 10 | 1 |
| superpathway of seleno-compound metabolism | 19 | 5 | 1 |