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Experiment set32IT051 for
Klebsiella michiganensis M5al
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Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant
200 most detrimental genes:
gene
name
fitness
t score
description
BWI76
_RS06340
+9.7
23.1
hypothetical protein
compare
BWI76
_RS01540
+4.5
2.7
thiamine biosynthesis protein ThiS
compare
BWI76
_RS09025
+4.2
2.0
GntR family transcriptional regulator
compare
BWI76
_RS16645
+4.2
1.9
DeoR family transcriptional regulator
compare
BWI76
_RS11780
+3.9
2.3
2-deoxyglucose-6-phosphatase
compare
BWI76
_RS24940
+3.3
2.1
hypothetical protein
compare
BWI76
_RS15565
+3.2
1.6
hypothetical protein
compare
BWI76
_RS12870
+3.2
2.6
putative phytanoyl-CoA dioxygenase
compare
BWI76
_RS06530
+3.2
16.0
ATP-dependent Clp protease ATP-binding subunit ClpX
compare
BWI76
_RS05800
+3.2
8.7
phage transcriptional activator, Ogr/delta
compare
BWI76
_RS06780
+3.1
2.3
MexE family multidrug efflux RND transporter periplasmic adaptor subunit
compare
BWI76
_RS18780
+2.9
1.9
D-alanyl-D-alanine carboxypeptidase
compare
BWI76
_RS16220
+2.8
6.9
hypothetical protein
compare
BWI76
_RS11775
+2.8
1.2
2-deoxy-D-gluconate 3-dehydrogenase
compare
BWI76
_RS11265
+2.8
1.6
peptidase T
compare
BWI76
_RS06525
+2.7
7.7
ATP-dependent Clp protease proteolytic subunit
compare
BWI76
_RS09110
+2.6
1.4
glutathione ABC transporter permease GsiD
compare
BWI76
_RS17785
+2.6
2.2
septum site-determining protein MinD
compare
BWI76
_RS26410
+2.5
2.1
membrane protein
compare
BWI76
_RS14650
+2.5
1.7
helix-turn-helix transcriptional regulator
compare
BWI76
_RS18735
+2.5
1.2
tautomerase family protein
compare
BWI76
_RS23360
+2.4
1.9
diaminopimelate decarboxylase
compare
BWI76
_RS20430
+2.4
1.8
penicillin-insensitive murein endopeptidase
compare
BWI76
_RS12520
+2.2
4.4
hypothetical protein
compare
BWI76
_RS13420
+2.1
1.0
ABC transporter permease
compare
BWI76
_RS08455
+2.1
0.9
glutaminase
compare
BWI76
_RS18270
+2.1
4.9
hypothetical protein
compare
BWI76
_RS05070
+2.0
3.4
type II secretion system protein GspH
compare
BWI76
_RS24400
+2.0
1.7
outer membrane channel protein TolC
compare
BWI76
_RS19760
+2.0
1.4
GTP-binding protein
compare
BWI76
_RS11300
+2.0
2.5
cupin
compare
BWI76
_RS08770
+2.0
1.1
malonyl-ACP O-methyltransferase BioC
compare
BWI76
_RS14850
+2.0
1.6
LacI family transcriptional regulator
compare
BWI76
_RS11390
+1.9
1.7
iron dicitrate transport regulator FecR
compare
BWI76
_RS02940
+1.9
1.3
RpiR family transcriptional regulator
compare
BWI76
_RS24385
+1.9
2.6
phosphodiesterase
compare
BWI76
_RS18185
+1.9
0.9
membrane protein
compare
BWI76
_RS08625
+1.8
1.3
UDP-glucose 4-epimerase GalE
compare
BWI76
_RS24845
+1.7
1.5
PfkB domain-containing protein
compare
BWI76
_RS18390
+1.7
2.3
hypothetical protein
compare
BWI76
_RS26525
+1.7
1.6
nickel-responsive transcriptional regulator NikR
compare
BWI76
_RS14065
+1.6
2.4
hypothetical protein
compare
BWI76
_RS24965
+1.6
3.8
SCP2 domain-containing protein
compare
BWI76
_RS25435
+1.6
1.1
membrane protein
compare
BWI76
_RS11430
+1.6
1.4
lipoprotein
compare
BWI76
_RS20810
+1.6
2.2
ethanolamine utilization cobalamin adenosyltransferase
compare
BWI76
_RS10820
+1.6
1.6
iron uptake system protein EfeO
compare
BWI76
_RS10635
+1.6
1.1
GGDEF domain-containing protein
compare
BWI76
_RS17280
+1.5
0.9
patatin family protein
compare
BWI76
_RS11815
+1.5
2.2
hypothetical protein
compare
BWI76
_RS08920
+1.5
1.6
ATP-dependent DNA helicase DinG
compare
BWI76
_RS26145
+1.5
1.5
heat-shock protein Hsp15
compare
BWI76
_RS03880
+1.5
1.2
homoprotocatechuate degradation operon regulator, HpaR
compare
BWI76
_RS26130
+1.5
1.4
ADP compounds hydrolase NudE
compare
BWI76
_RS17650
+1.5
1.5
putative fatty acid desaturase
compare
BWI76
_RS19835
+1.5
3.5
nucleoid-associated protein YejK
compare
BWI76
_RS08380
+1.5
1.4
endonuclease VIII
compare
BWI76
_RS10395
+1.4
1.5
cold-shock protein
compare
BWI76
_RS19140
+1.4
2.8
citrate (Si)-synthase
compare
BWI76
_RS26575
+1.4
1.0
universal stress protein B
compare
BWI76
_RS02410
+1.4
1.3
EF-P beta-lysylation protein EpmB
compare
BWI76
_RS09470
+1.4
1.4
putrescine ABC transporter permease
compare
BWI76
_RS15920
+1.4
1.8
hypothetical protein
compare
BWI76
_RS06540
+1.4
2.1
DNA-binding protein HU-beta
compare
BWI76
_RS15295
+1.4
2.4
MDR efflux pump AcrAB transcriptional activator MarA
compare
BWI76
_RS14040
+1.4
2.7
thiaminase
compare
BWI76
_RS19360
+1.4
1.1
glucose dehydrogenase
compare
BWI76
_RS09820
+1.3
1.1
hypothetical protein
compare
BWI76
_RS18385
+1.3
1.2
hypothetical protein
compare
BWI76
_RS20435
+1.3
1.1
chorismate synthase
compare
BWI76
_RS25065
+1.3
2.2
polyribonucleotide nucleotidyltransferase
compare
BWI76
_RS21580
+1.3
1.3
SsrA-binding protein
compare
BWI76
_RS27395
+1.3
1.4
hypothetical protein
compare
BWI76
_RS25060
+1.3
2.8
lipoprotein NlpI
compare
BWI76
_RS18605
+1.3
1.1
oxidoreductase molybdopterin-binding protein
compare
BWI76
_RS06175
+1.3
1.7
DUF188 domain-containing protein
compare
BWI76
_RS16195
+1.3
1.2
hypothetical protein
compare
BWI76
_RS18900
+1.3
1.0
protein NifQ
compare
BWI76
_RS12555
+1.3
1.2
hypothetical protein
compare
BWI76
_RS23885
+1.3
0.6
2-octaprenylphenol hydroxylase
compare
BWI76
_RS09310
+1.3
0.9
hypothetical protein
compare
BWI76
_RS17835
+1.3
1.4
sugar ABC transporter permease
compare
BWI76
_RS01515
+1.3
3.6
PTS family cellobiose transporter subunit IIA
compare
BWI76
_RS02580
+1.3
0.7
23S rRNA (guanosine(2251)-2'-O)-methyltransferase
compare
BWI76
_RS22440
+1.3
1.2
iron ABC transporter permease
compare
BWI76
_RS15990
+1.3
1.7
serine protease
compare
BWI76
_RS21915
+1.2
0.9
short-chain dehydrogenase/reductase SDR
compare
BWI76
_RS16840
+1.2
0.7
ABC transporter
compare
BWI76
_RS21235
+1.2
1.2
hypothetical protein
compare
BWI76
_RS15985
+1.2
1.5
LysR family transcriptional regulator
compare
BWI76
_RS24750
+1.2
1.6
membrane protein
compare
BWI76
_RS07645
+1.2
1.5
short-chain dehydrogenase/reductase
compare
BWI76
_RS10755
+1.2
1.3
pyrimidine utilization flavin reductase protein F
compare
BWI76
_RS20400
+1.2
1.2
arabinose transporter
compare
BWI76
_RS00180
+1.2
0.6
F0F1 ATP synthase subunit epsilon
compare
BWI76
_RS22645
+1.2
2.1
RNA polymerase sigma factor RpoS
compare
BWI76
_RS24380
+1.2
2.8
esterase YqiA
compare
BWI76
_RS19570
+1.2
1.6
3-hydroxybenzoate 6-hydroxylase
compare
BWI76
_RS16485
+1.2
1.3
ribonuclease T
compare
BWI76
_RS06070
+1.2
2.5
taurine transporter ATP-binding subunit
compare
BWI76
_RS22085
+1.2
2.6
L-valine transporter subunit YgaH
compare
BWI76
_RS19100
+1.2
0.9
putative acid phosphatase
compare
BWI76
_RS04120
+1.2
1.4
metal-dependent hydrolase
compare
BWI76
_RS15000
+1.1
1.2
amino acid ABC transporter ATP-binding protein
compare
BWI76
_RS07585
+1.1
2.9
polar amino acid ABC transporter inner membrane subunit
compare
BWI76
_RS13245
+1.1
2.2
DNA-damage-inducible protein I
compare
BWI76
_RS26920
+1.1
0.9
DNA-3-methyladenine glycosylase I
compare
BWI76
_RS15945
+1.1
0.9
voltage-gated ClC-type chloride channel ClcB
compare
BWI76
_RS10760
+1.1
3.1
nitroreductase family protein
compare
BWI76
_RS07510
+1.1
1.2
hypothetical protein
compare
BWI76
_RS12535
+1.1
1.6
hypothetical protein
compare
BWI76
_RS20750
+1.1
1.1
carboxysome structural protein EutK
compare
BWI76
_RS22910
+1.1
1.2
flap endonuclease Xni
compare
BWI76
_RS15635
+1.1
1.8
hypothetical protein
compare
BWI76
_RS18335
+1.1
1.3
DNA-binding response regulator
compare
BWI76
_RS07595
+1.1
1.3
putative oxidoreductase
compare
BWI76
_RS13710
+1.1
1.6
benzoate 1,2-dioxygenase small subunit
compare
BWI76
_RS02180
+1.1
1.0
hypothetical protein
compare
BWI76
_RS02880
+1.1
2.3
membrane protein
compare
BWI76
_RS00565
+1.1
2.2
branched-chain amino acid transport
compare
BWI76
_RS17345
+1.1
2.3
nitrate/nitrite two-component system sensor histidine kinase NarX
compare
BWI76
_RS08800
+1.1
1.7
phosphoethanolamine transferase EptA
compare
BWI76
_RS11255
+1.1
0.8
putrescine/spermidine ABC transporter ATP-binding protein
compare
BWI76
_RS18045
+1.0
1.0
spore coat U domain-containing protein
compare
BWI76
_RS24035
+1.0
2.1
hypothetical protein
compare
BWI76
_RS10595
+1.0
1.2
allantoate amidohydrolase
compare
BWI76
_RS09705
+1.0
0.9
transketolase
compare
BWI76
_RS24120
+1.0
2.7
YggW family oxidoreductase
compare
BWI76
_RS10670
+1.0
0.8
PTS fructose transporter subunit IIC
compare
BWI76
_RS07350
+1.0
3.1
alcohol dehydrogenase
compare
BWI76
_RS16135
+1.0
1.6
acetyl-CoA acetyltransferase
compare
BWI76
_RS21920
+1.0
2.8
amino acid ABC transporter substrate-binding protein
compare
BWI76
_RS13870
+1.0
1.2
hypothetical protein
compare
BWI76
_RS20390
+1.0
2.4
erythronate-4-phosphate dehydrogenase
compare
BWI76
_RS23675
+1.0
1.4
allulose-6-phosphate 3-epimerase
compare
BWI76
_RS23400
+1.0
1.5
oligogalacturonide lyase
compare
BWI76
_RS01585
+1.0
2.5
transcriptional regulator
compare
BWI76
_RS26890
+1.0
0.6
hypothetical protein
compare
BWI76
_RS12125
+1.0
1.2
hypothetical protein
compare
BWI76
_RS21505
+1.0
1.0
hypothetical protein
compare
BWI76
_RS07615
+1.0
1.5
betaine-aldehyde dehydrogenase
compare
BWI76
_RS16500
+1.0
2.2
superoxide dismutase [Fe]
compare
BWI76
_RS21275
+1.0
1.2
lytic transglycosylase F
compare
BWI76
_RS09925
+1.0
0.9
23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase
compare
BWI76
_RS00335
+1.0
2.5
hypothetical protein
compare
BWI76
_RS16990
+1.0
1.4
ABC transporter ATP-binding protein
compare
BWI76
_RS07280
+1.0
1.3
branched-chain amino acid ABC transporter permease
compare
BWI76
_RS06465
+1.0
1.1
IclR family transcriptional regulator
compare
BWI76
_RS23690
+1.0
1.2
putative glyoxalase/bleomycin resistance protein/dioxygenase
compare
BWI76
_RS27450
+1.0
2.2
ferredoxin--NADP(+) reductase
compare
BWI76
_RS04530
+1.0
1.1
peptidylprolyl isomerase SurA
compare
BWI76
_RS26865
+1.0
1.7
dipeptide ABC transporter ATP-binding protein
compare
BWI76
_RS12670
+1.0
1.7
DNA polymerase V subunit UmuD
compare
BWI76
_RS07200
+1.0
1.9
MFS transporter
compare
BWI76
_RS12545
+1.0
1.5
hypothetical protein
compare
BWI76
_RS17500
+1.0
1.2
knotted carbamoyltransferase YgeW
compare
BWI76
_RS16040
+1.0
1.3
biotin-independent malonate decarboxylase subunit gamma
compare
BWI76
_RS15015
+1.0
1.1
DUF2132 domain-containing protein
compare
BWI76
_RS16575
+1.0
2.6
cytochrome ubiquinol oxidase subunit I
compare
BWI76
_RS15760
+1.0
1.1
hypothetical protein
compare
BWI76
_RS18455
+1.0
1.1
tRNA-Ser
compare
BWI76
_RS19110
+1.0
1.1
hypothetical protein
compare
BWI76
_RS08980
+1.0
0.9
DNA starvation/stationary phase protection protein
compare
BWI76
_RS23020
+1.0
0.9
cobalamin biosynthesis protein CbiQ
compare
BWI76
_RS11655
+0.9
2.4
TVP38/TMEM64 family protein
compare
BWI76
_RS01545
+0.9
0.9
thiamine biosynthesis protein ThiS
compare
BWI76
_RS24315
+0.9
1.5
cell division protein FtsP
compare
BWI76
_RS12495
+0.9
1.1
2-Cys peroxiredoxin
compare
BWI76
_RS18580
+0.9
1.4
hypothetical protein
compare
BWI76
_RS09090
+0.9
1.0
beta-aspartyl-peptidase
compare
BWI76
_RS20565
+0.9
1.4
hypothetical protein
compare
BWI76
_RS00990
+0.9
1.4
ketol-acid reductoisomerase
compare
BWI76
_RS05570
+0.9
0.7
hypothetical protein
compare
BWI76
_RS06255
+0.9
1.4
LysR family transcriptional regulator
compare
BWI76
_RS26730
+0.9
1.0
inner membrane protein YhjD
compare
BWI76
_RS20595
+0.9
1.3
LysR family transcriptional regulator
compare
BWI76
_RS07185
+0.9
1.2
hypothetical protein
compare
BWI76
_RS13610
+0.9
2.3
sugar transporter
compare
BWI76
_RS02560
+0.9
2.7
membrane protein
compare
BWI76
_RS19325
+0.9
1.3
mandelate racemase
compare
BWI76
_RS13275
+0.9
1.3
hypothetical protein
compare
BWI76
_RS09970
+0.9
1.1
porin OmpA
compare
BWI76
_RS23415
+0.9
2.0
MFS transporter
compare
BWI76
_RS15420
+0.9
1.2
beta-D-galactosidase
compare
BWI76
_RS11700
+0.9
0.9
hypothetical protein
compare
BWI76
_RS07920
+0.9
2.0
methionine aminotransferase
compare
BWI76
_RS06225
+0.9
1.3
exonuclease sbcCD subunit D
compare
BWI76
_RS05060
+0.9
1.1
type II secretion system protein GspJ
compare
BWI76
_RS26950
+0.9
4.4
2-dehydro-3-deoxygluconokinase
compare
BWI76
_RS01905
+0.9
2.1
envelope stress response protein PspG
compare
BWI76
_RS24510
+0.9
3.1
urease subunit alpha
compare
BWI76
_RS22780
+0.9
2.6
7-carboxy-7-deazaguanine synthase QueE
compare
BWI76
_RS18240
+0.9
1.3
L-arabinose ABC transporter permease AraH
compare
BWI76
_RS12465
+0.9
0.7
phage shock protein D
compare
BWI76
_RS27605
+0.9
1.7
hypothetical protein
compare
BWI76
_RS11410
+0.9
1.3
leucine efflux protein
compare
BWI76
_RS23215
+0.9
1.2
N-acetylmuramoyl-L-alanine amidase
compare
BWI76
_RS13065
+0.9
1.8
LysR family transcriptional regulator
compare
BWI76
_RS05425
+0.9
1.3
EEP domain-containing protein
compare
BWI76
_RS12470
+0.9
1.0
thiosulfate sulfurtransferase PspE
compare
Specific Phenotypes
For 2 genes in this experiment