Experiment set32IT048 for Klebsiella michiganensis M5al
Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant
Group: agar plate interactionMedia: LB
Culturing: Koxy_ML2a, agar plate, Aerobic, at 30 (C), (Solid)
By: Cat_Manuel on 2/1/22
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 8 genes in this experiment
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Arginine and proline metabolism
- Urea cycle and metabolism of amino groups
- Lysine biosynthesis
- Streptomycin biosynthesis
- Inositol phosphate metabolism
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-ornithine biosynthesis I | 5 | 5 | 2 |
| aerobic respiration III (alternative oxidase pathway) | 3 | 3 | 1 |
| starch degradation IV | 3 | 2 | 1 |
| starch degradation III | 4 | 4 | 1 |
| L-arginine biosynthesis I (via L-ornithine) | 9 | 9 | 2 |
| L-arginine biosynthesis III (via N-acetyl-L-citrulline) | 9 | 8 | 2 |
| L-arginine degradation II (AST pathway) | 5 | 5 | 1 |
| myo-inositol degradation II | 5 | 1 | 1 |
| myo-inositol degradation I | 7 | 7 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 16 | 2 |
| L-lysine biosynthesis I | 9 | 9 | 1 |
| L-arginine biosynthesis II (acetyl cycle) | 10 | 9 | 1 |
| myo-, chiro- and scyllo-inositol degradation | 10 | 7 | 1 |
| superpathway of L-lysine, L-threonine and L-methionine biosynthesis I | 18 | 18 | 1 |
| streptomycin biosynthesis | 18 | 2 | 1 |
| aspartate superpathway | 25 | 24 | 1 |