Experiment set32IT030 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.8X

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS06780 +1.4 7.1 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS05570 +1.4 2.5 hypothetical protein compare
BWI76_RS00865 +1.3 8.6 DNA-binding transcriptional regulator OxyR compare
BWI76_RS27820 +1.2 1.5 ilvB operon leader peptide IvbL compare
BWI76_RS27425 +1.2 2.5 DNA-directed RNA polymerase subunit omega compare
BWI76_RS21345 +1.1 4.1 sigma-E factor regulatory protein RseB compare
BWI76_RS26405 +1.0 2.3 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS06775 +1.0 7.3 multidrug efflux RND transporter permease subunit compare
BWI76_RS26095 +1.0 1.1 shikimate kinase compare
BWI76_RS21485 +0.9 5.9 DUF4154 domain-containing protein compare
BWI76_RS27780 +0.9 2.6 hypothetical protein compare
BWI76_RS07475 +0.9 1.7 DNA-binding transcriptional regulator RamA compare
BWI76_RS23470 +0.9 7.3 hypothetical protein compare
BWI76_RS02180 +0.9 1.4 hypothetical protein compare
BWI76_RS15035 +0.8 1.0 metal ABC transporter permease compare
BWI76_RS24580 +0.8 4.1 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS11840 +0.8 1.5 tryptophan synthase subunit alpha compare
BWI76_RS14040 +0.8 1.2 thiaminase compare
BWI76_RS05045 +0.8 1.8 general secretion pathway protein GspM compare
BWI76_RS14065 +0.8 1.4 hypothetical protein compare
BWI76_RS21490 +0.8 5.2 GGDEF domain-containing protein compare
BWI76_RS11815 +0.8 2.0 hypothetical protein compare
BWI76_RS06190 +0.8 2.8 hypothetical protein compare
BWI76_RS02580 +0.8 1.6 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS15215 +0.8 1.3 N-acetyltransferase compare
BWI76_RS06810 +0.7 1.7 hypothetical protein compare
BWI76_RS23505 +0.7 6.6 ferrous iron transporter B compare
BWI76_RS26470 +0.7 3.7 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS15950 +0.7 2.2 dethiobiotin synthase compare
BWI76_RS12465 +0.7 1.2 phage shock protein D compare
BWI76_RS27875 +0.7 0.9 membrane protein compare
BWI76_RS03665 +0.7 0.9 ABC transporter ATP-binding protein compare
BWI76_RS09255 +0.7 0.8 hypothetical protein compare
BWI76_RS01565 +0.7 1.8 NADH pyrophosphatase compare
BWI76_RS24585 +0.7 2.2 glycerol dehydrogenase compare
BWI76_RS20795 +0.7 1.1 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS20995 +0.7 3.0 RNA degradosome polyphosphate kinase compare
BWI76_RS01885 +0.7 1.3 CsbD family protein compare
BWI76_RS21075 +0.7 1.4 membrane protein compare
BWI76_RS13215 +0.7 1.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS24600 +0.7 1.6 dihydroxyacetone kinase compare
BWI76_RS15315 +0.7 2.3 DNA-binding protein compare
BWI76_RS24900 +0.6 1.2 DeoR family transcriptional regulator compare
BWI76_RS15190 +0.6 4.3 GGDEF domain-containing protein compare
BWI76_RS17375 +0.6 2.2 nitrate ABC transporter, permease protein compare
BWI76_RS20910 +0.6 3.7 glycine cleavage system transcriptional repressor compare
BWI76_RS04055 +0.6 5.8 GGDEF domain-containing protein compare
BWI76_RS11610 +0.6 2.2 glutamate dehydrogenase compare
BWI76_RS13560 +0.6 1.1 amino acid ABC transporter substrate-binding subunit compare
BWI76_RS08585 +0.6 1.8 nicotinamide riboside transporter PnuC compare
BWI76_RS15260 +0.6 1.5 hypothetical protein compare
BWI76_RS07985 +0.6 1.0 fluoride ion transporter CrcB compare
BWI76_RS08655 +0.6 1.3 molybdenum ABC transporter ATP-binding protein compare
BWI76_RS23970 +0.6 2.2 mechanosensitive ion channel protein MscS compare
BWI76_RS24925 +0.6 1.8 DnaA initiator-associating protein DiaA compare
BWI76_RS18335 +0.6 3.2 DNA-binding response regulator compare
BWI76_RS17985 +0.6 2.7 hypothetical protein compare
BWI76_RS26650 +0.6 4.0 iron transporter compare
BWI76_RS07470 +0.6 1.6 MBL fold metallo-hydrolase compare
BWI76_RS03105 +0.6 1.0 myo-inosose-2 dehydratase compare
BWI76_RS06465 +0.6 0.9 IclR family transcriptional regulator compare
BWI76_RS00710 +0.6 1.6 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS04970 +0.6 1.1 ABC transporter permease compare
BWI76_RS16330 +0.6 1.8 oxidoreductase compare
BWI76_RS15285 +0.6 1.7 stress protection protein MarC compare
BWI76_RS09025 +0.6 1.3 GntR family transcriptional regulator compare
BWI76_RS16040 +0.6 2.2 biotin-independent malonate decarboxylase subunit gamma compare
BWI76_RS19850 +0.6 1.8 tRNA-Pro compare
BWI76_RS15435 +0.6 1.2 hypothetical protein compare
BWI76_RS21680 +0.6 1.3 antitoxin of the YeeV-YeeU toxin-antitoxin system compare
BWI76_RS21475 +0.6 3.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS11500 +0.6 2.1 D-hexose-6-phosphate mutarotase compare
BWI76_RS01585 +0.6 3.8 transcriptional regulator compare
BWI76_RS15775 +0.6 1.9 replication protein compare
BWI76_RS09115 +0.6 2.3 30S ribosomal protein S12 methylthiotransferase RimO compare
BWI76_RS15920 +0.6 1.3 hypothetical protein compare
BWI76_RS11360 +0.6 2.1 L-asparaginase compare
BWI76_RS00880 +0.6 3.5 membrane protein compare
BWI76_RS19605 +0.6 1.6 CidB/LrgB family autolysis modulator compare
BWI76_RS15940 +0.5 1.2 DMSO reductase maturation protein DsmD compare
BWI76_RS25375 +0.5 1.4 hypothetical protein compare
BWI76_RS00995 +0.5 1.6 peptidyl-prolyl cis-trans isomerase compare
BWI76_RS06540 +0.5 2.0 DNA-binding protein HU-beta compare
BWI76_RS16295 +0.5 2.5 bifunctional PTS system maltose and glucose-specific transporter subunits IICB compare
BWI76_RS05950 +0.5 1.4 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS08230 +0.5 0.8 hypothetical protein compare
BWI76_RS18870 +0.5 1.1 protein NifZ compare
BWI76_RS14625 +0.5 1.1 protein TolA compare
BWI76_RS23500 +0.5 4.6 hypothetical protein compare
BWI76_RS01190 +0.5 1.5 iron donor protein CyaY compare
BWI76_RS13020 +0.5 2.6 NmrA family protein compare
BWI76_RS22455 +0.5 3.7 TonB-dependent receptor compare
BWI76_RS20915 +0.5 3.6 peroxiredoxin compare
BWI76_RS09975 +0.5 2.2 cell division inhibitor SulA compare
BWI76_RS27945 +0.5 1.2 2-oxo-3-deoxygalactonate kinase compare
BWI76_RS12790 +0.5 1.0 lactate dehydrogenase compare
BWI76_RS13980 +0.5 1.3 hypothetical protein compare
BWI76_RS13480 +0.5 1.2 XRE family transcriptional regulator compare
BWI76_RS22815 +0.5 3.5 hybrid sensor histidine kinase/response regulator compare
BWI76_RS12980 +0.5 1.7 AraC family transcriptional regulator compare
BWI76_RS24965 +0.5 1.2 SCP2 domain-containing protein compare
BWI76_RS11845 +0.5 1.2 tryptophan synthase subunit beta compare
BWI76_RS16555 +0.5 1.6 hypothetical protein compare
BWI76_RS23195 +0.5 1.6 ethanolamine utilization protein EutP compare
BWI76_RS26215 +0.5 2.5 glycogen-branching enzyme compare
BWI76_RS05510 +0.5 1.9 NADH:ubiquinone reductase (Na(+)-transporting) subunit E compare
BWI76_RS09730 +0.5 0.9 pyruvate formate lyase 1-activating protein compare
BWI76_RS14150 +0.5 2.3 dihydrolipoyllysine-residue acetyltransferase compare
BWI76_RS12095 +0.5 3.3 hypothetical protein compare
BWI76_RS12595 +0.5 2.4 hypothetical protein compare
BWI76_RS18940 +0.5 1.9 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS24820 +0.5 1.4 glycerate 2-kinase compare
BWI76_RS21465 +0.5 2.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS10875 +0.5 1.2 quercetin 2,3-dioxygenase compare
BWI76_RS16275 +0.5 1.9 fumarate hydratase FumA compare
BWI76_RS16095 +0.5 1.0 thiamine biosynthesis protein ApbE compare
BWI76_RS15290 +0.5 1.0 transcriptional regulator compare
BWI76_RS24605 +0.5 3.5 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS10435 +0.5 1.6 suppressor for copper-sensitivity C compare
BWI76_RS11150 +0.5 1.1 membrane protein compare
BWI76_RS21140 +0.5 1.0 molecular chaperone HscA compare
BWI76_RS11335 +0.5 0.9 tautomerase compare
BWI76_RS24410 +0.5 2.3 putative glutathione-like synthetase compare
BWI76_RS12485 +0.5 1.5 TyrR family transcriptional regulator compare
BWI76_RS13130 +0.5 1.7 phenylacetic acid degradation protein PaaD compare
BWI76_RS20330 +0.5 1.6 histidine/lysine/arginine/ornithine ABC transporter permease HisQ compare
BWI76_RS24950 +0.5 2.6 hypothetical protein compare
BWI76_RS17860 +0.5 1.3 YoaH family protein compare
BWI76_RS19935 +0.5 1.2 hypothetical protein compare
BWI76_RS13200 +0.5 2.1 hypothetical protein compare
BWI76_RS14415 +0.5 1.0 transcriptional regulator, TetR family protein compare
BWI76_RS26645 +0.5 3.4 ferrous iron transporter B compare
BWI76_RS21260 +0.5 2.8 two-component sensor histidine kinase compare
BWI76_RS14280 +0.5 2.9 hypothetical protein compare
BWI76_RS22450 +0.5 1.2 selenoprotein W-related protein compare
BWI76_RS25705 +0.5 1.7 hypothetical protein compare
BWI76_RS15210 +0.5 2.3 LysR family transcriptional regulator compare
BWI76_RS27865 +0.5 1.8 hypothetical protein compare
BWI76_RS11200 +0.5 1.8 transpeptidase compare
BWI76_RS16200 +0.5 1.4 NAD(P) transhydrogenase subunit beta compare
BWI76_RS00795 +0.5 0.9 carboxymuconolactone decarboxylase compare
BWI76_RS16680 +0.5 1.3 ABC transporter substrate-binding protein compare
BWI76_RS11535 +0.5 1.5 putative oxidoreductase, Zn-dependent and NAD(P)-binding protein compare
BWI76_RS10285 +0.4 2.3 family 3 extracellular solute-binding protein compare
BWI76_RS02090 +0.4 1.5 membrane protein compare
BWI76_RS20940 +0.4 1.3 uracil/xanthine transporter compare
BWI76_RS13810 +0.4 2.0 MarR family transcriptional regulator compare
BWI76_RS20970 +0.4 1.0 phosphoribosylglycinamide formyltransferase compare
BWI76_RS15305 +0.4 1.7 O-acetylserine/cysteine exporter compare
BWI76_RS10805 +0.4 2.2 hypothetical protein compare
BWI76_RS21920 +0.4 1.8 amino acid ABC transporter substrate-binding protein compare
BWI76_RS09110 +0.4 1.3 glutathione ABC transporter permease GsiD compare
BWI76_RS06320 +0.4 1.6 Xaa-Pro aminopeptidase compare
BWI76_RS07595 +0.4 1.1 putative oxidoreductase compare
BWI76_RS03995 +0.4 1.1 hypothetical protein compare
BWI76_RS03045 +0.4 0.9 hypothetical protein compare
BWI76_RS04645 +0.4 2.4 3-dehydroquinase compare
BWI76_RS21130 +0.4 1.2 Fe-S assembly protein IscX compare
BWI76_RS10770 +0.4 1.7 pyrimidine utilization protein C compare
BWI76_RS13420 +0.4 1.3 ABC transporter permease compare
BWI76_RS04425 +0.4 1.6 oxaloacetate decarboxylase subunit gamma compare
BWI76_RS09655 +0.4 1.8 leucine-responsive regulatory protein compare
BWI76_RS02825 +0.4 1.9 putative acyltransferase domain protein compare
BWI76_RS03890 +0.4 2.0 hypothetical protein compare
BWI76_RS08640 +0.4 1.2 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS07760 +0.4 1.4 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS11235 +0.4 0.8 hypothetical protein compare
BWI76_RS03520 +0.4 3.9 diguanylate cyclase compare
BWI76_RS08625 +0.4 1.4 UDP-glucose 4-epimerase GalE compare
BWI76_RS07060 +0.4 1.5 carbamate kinase compare
BWI76_RS17955 +0.4 1.6 hypothetical protein compare
BWI76_RS24775 +0.4 2.4 hypothetical protein compare
BWI76_RS08765 +0.4 1.7 8-amino-7-oxononanoate synthase compare
BWI76_RS09570 +0.4 2.4 hydroxylamine reductase compare
BWI76_RS05810 +0.4 0.7 hypothetical protein compare
BWI76_RS26205 +0.4 1.5 glucose-1-phosphate adenylyltransferase compare
BWI76_RS14800 +0.4 1.9 non-heme chloroperoxidase compare
BWI76_RS20395 +0.4 2.0 flagella biosynthesis regulator compare
BWI76_RS14670 +0.4 1.2 hypothetical protein compare
BWI76_RS19610 +0.4 2.4 Cytidine deaminase (EC 3.5.4.5) (from data) compare
BWI76_RS00815 +0.4 1.9 glycerol dehydrogenase compare
BWI76_RS23555 +0.4 2.0 type 1 major fimbrial subunit precursor compare
BWI76_RS07630 +0.4 1.8 high-affinity choline transporter BetT compare
BWI76_RS20220 +0.4 2.0 sugar phosphatase compare
BWI76_RS07230 +0.4 1.9 transcriptional regulator compare
BWI76_RS16575 +0.4 1.5 cytochrome ubiquinol oxidase subunit I compare
BWI76_RS16515 +0.4 1.1 LysR family transcriptional regulator compare
BWI76_RS18420 +0.4 2.6 DNA (cytosine-5-)-methyltransferase compare
BWI76_RS02050 +0.4 0.8 CidA/LrgA family protein compare
BWI76_RS01095 +0.4 1.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS16115 +0.4 1.9 fumarate hydratase compare
BWI76_RS08375 +0.4 1.2 pyroglutamyl-peptidase I compare
BWI76_RS07645 +0.4 1.0 short-chain dehydrogenase/reductase compare
BWI76_RS09715 +0.4 2.2 hypothetical protein compare
BWI76_RS23455 +0.4 0.9 Na(+)-translocating NADH-quinone reductase subunit E compare
BWI76_RS24910 +0.4 2.0 rRNA (cytidine-2'-O-)-methyltransferase compare
BWI76_RS12700 +0.4 1.7 hypothetical protein compare
BWI76_RS07065 +0.4 1.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS25005 +0.4 1.9 biotin-independent malonate decarboxylase subunit beta compare
BWI76_RS15235 +0.4 1.6 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered across organisms