Experiment set32IT010 for Klebsiella michiganensis M5al

Compare to:

Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 0.2X

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS12485 +1.2 3.7 TyrR family transcriptional regulator compare
BWI76_RS11430 +1.2 2.1 lipoprotein compare
BWI76_RS06540 +1.1 4.2 DNA-binding protein HU-beta compare
BWI76_RS07970 +1.1 2.8 hypothetical protein compare
BWI76_RS02580 +1.1 1.4 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS02180 +1.1 2.1 hypothetical protein compare
BWI76_RS00865 +1.0 4.4 DNA-binding transcriptional regulator OxyR compare
BWI76_RS17155 +1.0 2.1 hypothetical protein compare
BWI76_RS05570 +1.0 1.6 hypothetical protein compare
BWI76_RS25000 +1.0 2.2 malonate decarboxylase acyl carrier protein compare
BWI76_RS16200 +0.9 2.5 NAD(P) transhydrogenase subunit beta compare
BWI76_RS14065 +0.9 1.3 hypothetical protein compare
BWI76_RS02050 +0.9 2.6 CidA/LrgA family protein compare
BWI76_RS12790 +0.9 1.9 lactate dehydrogenase compare
BWI76_RS21810 +0.9 1.9 universal stress protein compare
BWI76_RS08380 +0.9 2.0 endonuclease VIII compare
BWI76_RS27395 +0.9 3.3 hypothetical protein compare
BWI76_RS21490 +0.8 6.6 GGDEF domain-containing protein compare
BWI76_RS16025 +0.8 1.6 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS08405 +0.8 2.5 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS05070 +0.8 2.5 type II secretion system protein GspH compare
BWI76_RS04055 +0.8 7.1 GGDEF domain-containing protein compare
BWI76_RS20795 +0.8 1.3 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS17770 +0.8 1.4 isomerase/hydrolase compare
BWI76_RS03665 +0.8 1.8 ABC transporter ATP-binding protein compare
BWI76_RS01585 +0.8 3.9 transcriptional regulator compare
BWI76_RS07605 +0.8 2.0 N-acetyltransferase GCN5 compare
BWI76_RS13785 +0.8 1.9 ABC transporter permease compare
BWI76_RS21485 +0.7 4.3 DUF4154 domain-containing protein compare
BWI76_RS07760 +0.7 1.8 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS13245 +0.7 1.1 DNA-damage-inducible protein I compare
BWI76_RS12680 +0.7 2.1 oxidoreductase compare
BWI76_RS09690 +0.7 2.9 dimethyl sulfoxide reductase compare
BWI76_RS12870 +0.7 1.7 putative phytanoyl-CoA dioxygenase compare
BWI76_RS27875 +0.7 1.3 membrane protein compare
BWI76_RS16230 +0.7 2.1 dihydromonapterin reductase compare
BWI76_RS00180 +0.7 0.9 F0F1 ATP synthase subunit epsilon compare
BWI76_RS06465 +0.7 1.7 IclR family transcriptional regulator compare
BWI76_RS10575 +0.7 1.7 polar amino acid ABC transporter permease compare
BWI76_RS23470 +0.7 6.1 hypothetical protein compare
BWI76_RS20995 +0.7 4.0 RNA degradosome polyphosphate kinase compare
BWI76_RS24810 +0.7 3.2 hypothetical protein compare
BWI76_RS13755 +0.7 1.1 hypothetical protein compare
BWI76_RS13095 +0.7 1.9 phenylacetate-CoA oxygenase subunit PaaB compare
BWI76_RS01540 +0.7 1.1 thiamine biosynthesis protein ThiS compare
BWI76_RS19480 +0.7 2.8 transcriptional regulator compare
BWI76_RS11845 +0.7 1.2 tryptophan synthase subunit beta compare
BWI76_RS18385 +0.7 1.1 hypothetical protein compare
BWI76_RS15035 +0.7 1.5 metal ABC transporter permease compare
BWI76_RS18335 +0.7 3.8 DNA-binding response regulator compare
BWI76_RS23505 +0.7 5.8 ferrous iron transporter B compare
BWI76_RS00710 +0.7 1.5 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS15440 +0.6 2.6 hypothetical protein compare
BWI76_RS26875 +0.6 1.1 dipeptide ABC transporter permease DppC compare
BWI76_RS01385 +0.6 0.9 potassium transporter compare
BWI76_RS13275 +0.6 1.7 hypothetical protein compare
BWI76_RS02595 +0.6 1.6 hypothetical protein compare
BWI76_RS17955 +0.6 2.4 hypothetical protein compare
BWI76_RS15045 +0.6 2.1 LysR family transcriptional regulator compare
BWI76_RS27425 +0.6 1.2 DNA-directed RNA polymerase subunit omega compare
BWI76_RS11180 +0.6 3.7 hypothetical protein compare
BWI76_RS20960 +0.6 3.4 ROK family protein compare
BWI76_RS20230 +0.6 1.4 hypothetical protein compare
BWI76_RS05075 +0.6 1.0 type II secretion system protein GspG compare
BWI76_RS11460 +0.6 2.1 DUF441 family protein compare
BWI76_RS16330 +0.6 2.9 oxidoreductase compare
BWI76_RS23745 +0.6 3.3 arsenate reductase compare
BWI76_RS24580 +0.6 3.3 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS13250 +0.6 1.2 cytochrome b561 compare
BWI76_RS00060 +0.6 1.3 N-acetylneuraminate lyase compare
BWI76_RS11890 +0.6 3.5 glycosyl hydrolase compare
BWI76_RS15760 +0.6 1.3 hypothetical protein compare
BWI76_RS20750 +0.6 1.1 carboxysome structural protein EutK compare
BWI76_RS19130 +0.6 1.7 3-methyladenine DNA glycosylase 2 compare
BWI76_RS22130 +0.6 1.5 fructose-1-phosphate/6-phosphogluconate phosphatase compare
BWI76_RS10055 +0.6 1.0 AraC family transcriptional regulator compare
BWI76_RS08205 +0.6 2.4 DNA-binding transcriptional dual regulator NagC compare
BWI76_RS27780 +0.6 1.8 hypothetical protein compare
BWI76_RS11255 +0.5 0.8 putrescine/spermidine ABC transporter ATP-binding protein compare
BWI76_RS04645 +0.5 2.5 3-dehydroquinase compare
BWI76_RS12670 +0.5 1.7 DNA polymerase V subunit UmuD compare
BWI76_RS17920 +0.5 1.3 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS22815 +0.5 3.8 hybrid sensor histidine kinase/response regulator compare
BWI76_RS25510 +0.5 3.0 oxidoreductase compare
BWI76_RS15205 +0.5 1.4 succinate-semialdehyde dehydrogenase compare
BWI76_RS10255 +0.5 2.8 dihydrodipicolinate synthase family protein compare
BWI76_RS23580 +0.5 1.6 hypothetical protein compare
BWI76_RS19860 +0.5 0.9 hypothetical protein compare
BWI76_RS15260 +0.5 1.2 hypothetical protein compare
BWI76_RS26045 +0.5 1.7 nitrite reductase small subunit compare
BWI76_RS16000 +0.5 1.0 multidrug transporter subunit MdtI compare
BWI76_RS15620 +0.5 1.5 hypothetical protein compare
BWI76_RS05235 +0.5 0.7 hypothetical protein compare
BWI76_RS19700 +0.5 1.3 deoxyribonuclease IV compare
BWI76_RS10635 +0.5 2.5 GGDEF domain-containing protein compare
BWI76_RS20330 +0.5 1.8 histidine/lysine/arginine/ornithine ABC transporter permease HisQ compare
BWI76_RS01565 +0.5 1.2 NADH pyrophosphatase compare
BWI76_RS16210 +0.5 1.1 hypothetical protein compare
BWI76_RS19850 +0.5 1.4 tRNA-Pro compare
BWI76_RS03520 +0.5 4.7 diguanylate cyclase compare
BWI76_RS08215 +0.5 1.5 glucosamine-6-phosphate deaminase compare
BWI76_RS18780 +0.5 1.4 D-alanyl-D-alanine carboxypeptidase compare
BWI76_RS11700 +0.5 0.9 hypothetical protein compare
BWI76_RS09975 +0.5 2.6 cell division inhibitor SulA compare
BWI76_RS20040 +0.5 1.6 tricarboxylic transport membrane protein compare
BWI76_RS00595 +0.5 2.5 MFS transporter compare
BWI76_RS16685 +0.5 2.6 peptide ABC transporter permease compare
BWI76_RS00140 +0.5 0.6 phosphate transport system regulator PhoU compare
BWI76_RS14575 +0.5 1.9 TENA/THI-4 family protein compare
BWI76_RS03410 +0.5 2.6 hypothetical protein compare
BWI76_RS24740 +0.5 1.3 GntR family transcriptional regulator compare
BWI76_RS07185 +0.5 1.1 hypothetical protein compare
BWI76_RS24500 +0.5 1.0 urease subunit gamma compare
BWI76_RS14610 +0.5 2.1 putative hydrolase compare
BWI76_RS22435 +0.5 1.9 iron ABC transporter permease AfeC compare
BWI76_RS07865 +0.5 1.5 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS20290 +0.5 1.5 thiol:disulfide oxidoreductase compare
BWI76_RS02860 +0.5 1.2 glycine dehydrogenase compare
BWI76_RS16120 +0.5 1.1 4-carboxymuconolactone decarboxylase compare
BWI76_RS01515 +0.5 1.8 PTS family cellobiose transporter subunit IIA compare
BWI76_RS07710 +0.5 1.3 invasin-like protein compare
BWI76_RS17970 +0.5 0.7 zinc metalloprotease HtpX compare
BWI76_RS21690 +0.5 1.0 hypothetical protein compare
BWI76_RS09865 +0.5 2.4 MBL fold hydrolase compare
BWI76_RS24400 +0.5 2.4 outer membrane channel protein TolC compare
BWI76_RS09725 +0.5 1.9 MurR/RpiR family transcriptional regulator compare
BWI76_RS10060 +0.5 0.9 acylphosphatase compare
BWI76_RS16150 +0.5 0.9 IclR family transcriptional regulator compare
BWI76_RS25935 +0.5 1.2 glutathione-regulated potassium-efflux system ancillary protein KefG compare
BWI76_RS01855 +0.5 1.5 chorismate lyase compare
BWI76_RS06225 +0.5 2.2 exonuclease sbcCD subunit D compare
BWI76_RS23885 +0.5 0.5 2-octaprenylphenol hydroxylase compare
BWI76_RS13215 +0.5 0.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS13625 +0.5 1.9 hypothetical protein compare
BWI76_RS24770 +0.5 1.6 hypothetical protein compare
BWI76_RS18390 +0.5 1.6 hypothetical protein compare
BWI76_RS25705 +0.5 1.1 hypothetical protein compare
BWI76_RS07790 +0.5 1.4 plasmid stabilization protein compare
BWI76_RS17560 +0.5 2.5 formate dehydrogenase subunit alpha compare
BWI76_RS15330 +0.5 1.6 urea ABC transporter permease subunit UrtC compare
BWI76_RS01895 +0.4 1.9 cupin compare
BWI76_RS23255 +0.4 0.9 prepilin-type cleavage/methylation domain-containing protein compare
BWI76_RS01905 +0.4 1.5 envelope stress response protein PspG compare
BWI76_RS01185 +0.4 0.7 adenylate cyclase compare
BWI76_RS21460 +0.4 0.9 translation inhibitor protein RaiA compare
BWI76_RS20170 +0.4 1.4 NADH-quinone oxidoreductase subunit F compare
BWI76_RS16510 +0.4 2.0 transcriptional repressor PurR compare
BWI76_RS09760 +0.4 1.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS12985 +0.4 0.9 transcriptional regulator compare
BWI76_RS11350 +0.4 1.7 DeoR family transcriptional regulator compare
BWI76_RS11880 +0.4 2.7 23S rRNA pseudouridylate synthase B compare
BWI76_RS17930 +0.4 1.5 cold-shock protein CspC compare
BWI76_RS12875 +0.4 1.8 bifunctional deaminase-reductase compare
BWI76_RS22890 +0.4 2.4 5,10-methylenetetrahydromethanopterin reductase compare
BWI76_RS21070 +0.4 0.9 outer membrane protein assembly factor BamB compare
BWI76_RS12055 +0.4 2.3 DNA single-strand annealing protein RecT-like protein compare
BWI76_RS17795 +0.4 2.0 ribonuclease D compare
BWI76_RS11665 +0.4 1.1 exodeoxyribonuclease III compare
BWI76_RS00380 +0.4 2.4 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS09615 +0.4 0.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS07960 +0.4 1.9 ribonuclease I compare
BWI76_RS07955 +0.4 2.0 nucleoside diphosphate kinase regulator compare
BWI76_RS07225 +0.4 1.1 putative oxidoreductase compare
BWI76_RS07385 +0.4 2.0 short-chain dehydrogenase/reductase SDR compare
BWI76_RS01805 +0.4 1.8 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase compare
BWI76_RS19000 +0.4 2.1 acyltransferase compare
BWI76_RS03185 +0.4 1.0 CI repressor compare
BWI76_RS27625 +0.4 1.4 NADPH:quinone reductase compare
BWI76_RS23500 +0.4 3.7 hypothetical protein compare
BWI76_RS22455 +0.4 3.2 TonB-dependent receptor compare
BWI76_RS09275 +0.4 1.4 major capsid protein compare
BWI76_RS12450 +0.4 1.8 phage shock protein PspA compare
BWI76_RS10645 +0.4 2.1 phytanoyl-CoA dioxygenase compare
BWI76_RS05945 +0.4 2.2 amino acid ABC transporter permease compare
BWI76_RS11440 +0.4 0.7 hypothetical protein compare
BWI76_RS06060 +0.4 2.0 DNA-binding response regulator compare
BWI76_RS21945 +0.4 1.6 LysR family transcriptional regulator compare
BWI76_RS07675 +0.4 2.3 DeoR family transcriptional regulator compare
BWI76_RS15475 +0.4 2.3 NAD(P)-dependent oxidoreductase compare
BWI76_RS19550 +0.4 1.9 phospho-cellobiase compare
BWI76_RS24395 +0.4 1.5 ADP-ribose diphosphatase compare
BWI76_RS13680 +0.4 0.9 methyl viologen resistance protein SmvA compare
BWI76_RS15685 +0.4 1.2 hypothetical protein compare
BWI76_RS16475 +0.4 1.5 alkene reductase compare
BWI76_RS27380 +0.4 2.5 nucleoid occlusion factor SlmA compare
BWI76_RS08980 +0.4 0.7 DNA starvation/stationary phase protection protein compare
BWI76_RS23690 +0.4 1.1 putative glyoxalase/bleomycin resistance protein/dioxygenase compare
BWI76_RS07325 +0.4 1.6 aminoimidazole riboside kinase compare
BWI76_RS05880 +0.4 1.0 AraC-type DNA-binding domain-containing protein compare
BWI76_RS26205 +0.4 2.1 glucose-1-phosphate adenylyltransferase compare
BWI76_RS15920 +0.4 0.8 hypothetical protein compare
BWI76_RS17985 +0.4 1.8 hypothetical protein compare
BWI76_RS15955 +0.4 2.2 transcriptional regulator compare
BWI76_RS21180 +0.4 2.5 nickel transporter compare
BWI76_RS23680 +0.4 1.6 ribokinase compare
BWI76_RS10805 +0.4 1.4 hypothetical protein compare
BWI76_RS16460 +0.4 2.3 oxidoreductase compare
BWI76_RS16720 +0.4 1.6 hypothetical protein compare
BWI76_RS20220 +0.4 2.2 sugar phosphatase compare
BWI76_RS16295 +0.4 1.2 bifunctional PTS system maltose and glucose-specific transporter subunits IICB compare


Specific Phenotypes

For 7 genes in this experiment

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered across organisms