Experiment set31S62 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

a-Cyclodextrin 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
BT3642 +5.9 34.8 Na+-dependent transporter (NCBI ptt file) compare
BT4453 +3.0 2.1 6-pyruvoyl-tetrahydropterin synthase (NCBI ptt file) compare
BT1369 +2.2 3.4 hypothetical protein (NCBI ptt file) compare
BT1470 +1.7 3.0 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT2122 +1.7 3.0 lysyl-tRNA synthetase (NCBI ptt file) compare
BT0782 +1.7 2.8 hypothetical protein (NCBI ptt file) compare
BT4249 +1.7 1.8 hypothetical protein (NCBI ptt file) compare
BT3197 +1.6 1.5 hypothetical protein (NCBI ptt file) compare
BT1363 +1.6 1.9 DNA Pol III Epsilon Chain (NCBI ptt file) compare
BT0238 +1.6 2.3 transcriptional regulator (NCBI ptt file) compare
BT0067 +1.5 1.7 hypothetical protein (NCBI ptt file) compare
BT0185 +1.4 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT0405 +1.4 2.1 hypothetical protein (NCBI ptt file) compare
BT1127 +1.4 1.5 mobilization protein BmgB (NCBI ptt file) compare
BT1641 +1.3 2.3 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT2283 +1.3 2.0 hypothetical protein (NCBI ptt file) compare
BT4531 +1.2 2.5 conserved hypothetical protein (NCBI ptt file) compare
BT2099 +1.2 2.7 Fe3+ ABC transporter, permease (NCBI ptt file) compare
BT3438 +1.2 2.7 hypothetical protein (NCBI ptt file) compare
BT2841 +1.2 3.8 pyruvate kinase (NCBI ptt file) compare
BT0335 +1.1 4.3 putative ATPase (NCBI ptt file) compare
BT0702 +1.1 2.6 chloramphenicol acetyltransferase (CAT-III) (NCBI ptt file) compare
BT2027 +1.1 1.8 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT0327 +1.1 1.7 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) (NCBI ptt file) compare
BT1189 +1.1 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT0188 +1.1 2.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0833 +1.0 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT1197 +1.0 2.3 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT1112 +1.0 1.0 transposase (NCBI ptt file) compare
BT2979 +1.0 3.8 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT4197 +1.0 4.7 hypothetical protein (NCBI ptt file) compare
BT2280 +1.0 1.9 hypothetical protein (NCBI ptt file) compare
BT1948 +0.9 2.2 hypothetical protein (NCBI ptt file) compare
BT1951 +0.9 1.6 Fe3+ ABC transporter, permease protein (NCBI ptt file) compare
BT0697 +0.9 1.3 putative phosphatase/phosphohexomutase (NCBI ptt file) compare
BT0088 +0.9 2.8 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2996 +0.9 3.0 hypothetical protein (NCBI ptt file) compare
BT2945 +0.9 5.2 UDP-N-acetyl-D-mannosamine dehydrogenase (NCBI ptt file) compare
BT2537 +0.9 2.4 hypothetical protein (NCBI ptt file) compare
BT0967 +0.9 0.9 hypothetical protein (NCBI ptt file) compare
BT4416 +0.9 2.3 Cu2+ homeostasis protein CutC (NCBI ptt file) compare
BT0194 +0.8 2.9 hypothetical protein (NCBI ptt file) compare
BT0159 +0.8 3.6 conserved hypothetical protein (NCBI ptt file) compare
BT2272 +0.8 3.2 conserved hypothetical protein (NCBI ptt file) compare
BT0737 +0.8 3.0 formate--tetrahydrofolate ligase (NCBI ptt file) compare
BT0427 +0.8 1.3 xanthine phosphoribosyltransferase (NCBI ptt file) compare
BT1208 +0.8 2.5 conserved hypothetical protein (NCBI ptt file) compare
BT0125 +0.8 2.7 NADH:ubiquinone oxidoreductase subunit (NCBI ptt file) compare
BT0436 +0.8 2.5 arabinose-proton symporter (NCBI ptt file) compare
BT1736 +0.8 2.4 chromate transport protein (NCBI ptt file) compare
BT0977 +0.8 1.4 hypothetical protein (NCBI ptt file) compare
BT3356 +0.8 2.8 6-phosphofructokinase (NCBI ptt file) compare
BT0949 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
BT1412 +0.8 1.4 iron-sulfur flavoprotein (NCBI ptt file) compare
BT0928 +0.8 1.9 two-component system response regulator (NCBI ptt file) compare
BT1899 +0.8 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1793 +0.8 2.5 integrase protein (NCBI ptt file) compare
BT3805 +0.8 2.7 two-component system sensor histidine kinase (NCBI ptt file) compare
BT2974 +0.7 1.4 hypothetical protein (NCBI ptt file) compare
BT1274 +0.7 2.7 L-fuculose-1-phosphate aldolase FucA (4.1.2.17); D-ribulose-1-phosphate aldolase (from data) compare
BT0157 +0.7 1.9 hypothetical protein (NCBI ptt file) compare
BT3972 +0.7 3.3 putative NTP pyrophosphohydrolase (NCBI ptt file) compare
BT4237 +0.7 2.6 tRNA pseudouridine synthase A (NCBI ptt file) compare
BT0887 +0.7 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT3022 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
BT0563 +0.7 1.8 putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file) compare
BT0134 +0.7 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1095 +0.7 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT1439 +0.7 5.5 Outer membrane binding protein for vancomycin (SusD-like) (from data) compare
BT3641 +0.7 3.0 conserved hypothetical protein (NCBI ptt file) compare
BT4607 +0.7 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT2203 +0.7 2.6 conserved hypothetical protein (NCBI ptt file) compare
BT4582 +0.7 3.6 amidophosphoribosyltransferase precursor (NCBI ptt file) compare
BT3392 +0.7 2.4 nitroreductase (NCBI ptt file) compare
BT0613 +0.7 1.6 putative membrane protein involved in polysaccharide export (NCBI ptt file) compare
BT4449 +0.7 2.0 putative dehydrogenase (NCBI ptt file) compare
BT1947 +0.7 0.8 hypothetical protein (NCBI ptt file) compare
BT1109 +0.7 2.0 ferritin A (NCBI ptt file) compare
BT4036 +0.7 1.8 hypothetical protein (NCBI ptt file) compare
BT4432 +0.7 2.2 putative non-specific DNA-binding protein HU-1 (NCBI ptt file) compare
BT0231 +0.7 0.8 excisionase (NCBI ptt file) compare
BT0392 +0.7 1.6 lipopolysaccharide biosynthesis RfbU-related protein (NCBI ptt file) compare
BT1388 +0.7 1.3 integral membrane protein (NCBI ptt file) compare
BT4018 +0.7 1.4 hypothetical protein (NCBI ptt file) compare
BT1258 +0.7 1.5 putative acetyltransferase (NCBI ptt file) compare
BT2799 +0.7 2.2 putative PfkB family carbohydrate kinase (NCBI ptt file) compare
BT0828 +0.6 1.3 dTDP-4-dehydrorhamnose 3,5-epimerase (NCBI ptt file) compare
BT3182 +0.6 4.0 rubrerythrin (NCBI ptt file) compare
BT1198 +0.6 1.9 LemA protein (NCBI ptt file) compare
BT1255 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
BT1494 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT1569 +0.6 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT2407 +0.6 3.2 NAD-utilizing dehydrogenases (NCBI ptt file) compare
BT0147 +0.6 2.6 hypothetical protein (NCBI ptt file) compare
BT3907 +0.6 2.6 conserved hypothetical protein (NCBI ptt file) compare
BT0018 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
BT1704 +0.6 0.7 hypothetical protein (NCBI ptt file) compare
BT0378 +0.6 0.9 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) compare
BT1464 +0.6 1.5 putative acetyltransferase, (GNAT) family (NCBI ptt file) compare
BT1920 +0.6 2.6 hypothetical protein (NCBI ptt file) compare
BT4009 +0.6 3.2 integrase (NCBI ptt file) compare
BT2081 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
BT0513 +0.6 2.0 hypothetical protein (NCBI ptt file) compare
BT0184 +0.6 2.0 uridine kinase (uridine monophosphokinase) (NCBI ptt file) compare
BT2042 +0.6 0.9 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT4457 +0.6 2.5 conserved hypothetical protein (NCBI ptt file) compare
BT3832 +0.6 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT0778 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT2938 +0.6 1.5 putative glycosyltransferase (NCBI ptt file) compare
BT2018 +0.6 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT2929 +0.6 1.3 putative non-specific DNA-binding protein (NCBI ptt file) compare
BT1950 +0.6 2.1 Fe3+ ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT2010 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
BT0869 +0.6 0.7 hypothetical protein (NCBI ptt file) compare
BT4177 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0681 +0.6 1.2 two-component system sensor histidine kinase (NCBI ptt file) compare
BT1849 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
BT0516 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT4467 +0.6 2.0 hypothetical protein (NCBI ptt file) compare
BT1969 +0.6 3.3 NADP-dependent malate dehydrogenase (NCBI ptt file) compare
BT2284 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
BT3481 +0.6 1.1 putative glutaminase A (NCBI ptt file) compare
BT0399 +0.6 2.0 tyrosine-protein kinase ptk involved in exopolysaccharide biosynthesis (NCBI ptt file) compare
BT4455 +0.6 1.1 oxidoreductase, putative glycolate oxidase (NCBI ptt file) compare
BT3812 +0.6 2.1 phosphoribosylaminoimidazole carboxy formyl formyltransferase; inosine-monophosphate cyclohydrolase; bifunctional purine biosynthesis protein purH (NCBI ptt file) compare
BT0418 +0.6 1.0 outer membrane porin F precursor (NCBI ptt file) compare
BT4381 +0.6 1.5 hypothetical protein (NCBI ptt file) compare
BT4025 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
BT0472 +0.6 1.1 putative acyltransferase in colanic acid biosynthesis (NCBI ptt file) compare
BT1425 +0.6 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT1289 +0.6 1.9 putrescine transport system permease protein potI (NCBI ptt file) compare
BT3653 +0.6 2.1 hypothetical protein (NCBI ptt file) compare
BT3127 +0.6 2.4 conserved hypothetical protein (NCBI ptt file) compare
BT4730 +0.6 1.3 hypothetical protein (NCBI ptt file) compare
BT0297 +0.6 1.8 putative outer membrane lipoprotein silC precursor (NCBI ptt file) compare
BT2552 +0.6 2.3 putative butyrate kinase (NCBI ptt file) compare
BT0351 +0.6 2.0 L-arabinose isomerase (NCBI ptt file) compare
BT2142 +0.5 0.6 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT4002 +0.5 0.7 ATPase, ParA family (NCBI ptt file) compare
BT0816 +0.5 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT0511 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT0923 +0.5 0.6 putative periplasmic protein (NCBI ptt file) compare
BT4346 +0.5 1.0 conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file) compare
BT4100 +0.5 3.1 hypothetical protein (NCBI ptt file) compare
BT0693 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT1484 +0.5 1.0 conserved hypothetical protein with a conserved domain (NCBI ptt file) compare
BT0671 +0.5 1.1 outer membrane protein TolC, putative (NCBI ptt file) compare
BT3658 +0.5 2.9 hypothetical protein (NCBI ptt file) compare
BT0934 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT0936 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT1504 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
BT3251 +0.5 2.4 conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) compare
BT1962 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT4161 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT0130 +0.5 0.9 putative oxidoreductase (NCBI ptt file) compare
BT1055 +0.5 0.8 pyruvate formate-lyase activating enzyme (NCBI ptt file) compare
BT2597 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT1431 +0.5 1.0 putative DNA polymerase III epsilon chain (NCBI ptt file) compare
BT4733 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT2206 +0.5 1.5 Zinc ABC transporter, permease (NCBI ptt file) compare
BT0400 +0.5 1.0 putative tyrosine-protein kinase in capsular polysaccharide biosynthesis region (NCBI ptt file) compare
BT0080 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT3117 +0.5 1.5 putative oxidoreductase (NCBI ptt file) compare
BT1217 +0.5 1.3 two-component system response regulator (NCBI ptt file) compare
BT0768 +0.5 2.0 putative para-aminobenzoate synthase component I (NCBI ptt file) compare
BT4610 +0.5 0.7 RecA (NCBI ptt file) compare
BT3734 +0.5 1.9 oxidoreductase (NCBI ptt file) compare
BT1048 +0.5 1.8 putative secreted endoglycosidase (NCBI ptt file) compare
BT1436 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
BT0699 +0.5 1.1 putative sugar transporter (NCBI ptt file) compare
BT3915 +0.5 0.5 hypothetical protein (NCBI ptt file) compare
BT3396 +0.5 1.8 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4509 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT4501 +0.5 1.3 ribosomal large subunit pseudouridine synthase A (NCBI ptt file) compare
BT1041 +0.5 1.4 integrase (NCBI ptt file) compare
BT4451 +0.5 1.2 putative MTA/SAH nucleosidase (NCBI ptt file) compare
BT3200 +0.5 1.7 putative N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT1832 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1330 +0.5 0.8 conserved hypothetical protein (NCBI ptt file) compare
BT0017 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT3037 +0.5 1.9 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0733 +0.5 1.7 two-component system sensor histidine kinase (NCBI ptt file) compare
BT0001 +0.5 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT1260 +0.5 1.8 putative peptidase (NCBI ptt file) compare
BT2944 +0.5 2.3 putative UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT3209 +0.5 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT2266 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT4180 +0.5 2.7 acetyl xylan esterase A (NCBI ptt file) compare
BT3856 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
BT4483 +0.5 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1472 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT4505 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
BT0068 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT1912 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
BT1385 +0.5 1.4 transcriptional regulator (NCBI ptt file) compare
BT1215 +0.5 1.6 ABC transporter, permease protein (NCBI ptt file) compare
BT0165 +0.5 1.8 peptidyl-prolyl cis-trans isomerase (NCBI ptt file) compare
BT1424 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT0896 +0.5 0.7 putative patatin-like phospholipase (NCBI ptt file) compare
BT3639 +0.5 1.7 ThiF family protein, putative dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Bacteroides thetaiotaomicron VPI-5482 in carbon source experiments

For carbon source a-Cyclodextrin across organisms