Experiment set31S6 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Amylopectin from Potato; autoclaved 2.5 mg/ml carbon source

200 most important genes:

  gene name fitness t score description  
BT2837 -3.7 -6.7 2-oxoglutarate synthase subunit korB (NCBI ptt file) compare
BT3320 -3.6 -3.5 dihydrodipicolinate reductase (NCBI ptt file) compare
BT3395 -3.3 -3.9 N-succinylglutamate kinase (EC 2.7.2.-) (from data) compare
BT3733 -3.3 -5.9 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
BT1857 -3.2 -3.8 3-isopropylmalate dehydrogenase (NCBI ptt file) compare
BT2078 -3.1 -4.7 dihydroxy-acid dehydratase (NCBI ptt file) compare
BT3759 -3.0 -4.1 N-succinylglutamylphosphate reductase (EC 1.2.1.-) (from data) compare
BT2074 -2.9 -4.9 ketol-acid reductoisomerase (NCBI ptt file) compare
BT2402 -2.8 -4.7 homoserine phosphotransferase HomK (from data) compare
BT3933 -2.8 -2.7 prephenate dehydrogenase (EC 1.3.1.13) (from data) compare
BT3757 -2.8 -5.3 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) compare
BT2403 -2.8 -4.6 aspartate kinase / homoserine dehydrogenase (EC 2.7.2.4; EC 1.1.1.3) (from data) compare
BT2401 -2.7 -5.2 threonine synthase (NCBI ptt file) compare
BT1607 -2.7 -1.9 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase (NCBI ptt file) compare
BT1843 -2.7 -2.6 adenylosuccinate synthetase (NCBI ptt file) compare
BT2836 -2.7 -8.1 2-oxoglutarate synthase subunit korA (NCBI ptt file) compare
BT3698 SusG -2.7 -11.7 Alpha-amylase susG (EC 3.2.1.1) (from data) compare
BT3184 -2.7 -10.4 L-aspartate oxidase (NCBI ptt file) compare
BT1377 -2.6 -1.8 phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase (NCBI ptt file) compare
BT1375 -2.6 -5.7 aspartokinase (NCBI ptt file) compare
BT1374 -2.6 -3.0 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BT2076 -2.5 -3.0 acetohydroxybutanoate synthase regulatory subunit (EC 2.2.1.6) (from data) compare
BT3701 SusD -2.5 -7.7 SusD, outer membrane protein (NCBI ptt file) compare
BT0738 -2.4 -1.7 serine hydroxymethyltransferase (NCBI ptt file) compare
BT0202 -2.3 -3.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
BT3193 -2.3 -9.7 putative coenzyme A transferase (NCBI ptt file) compare
BT3918 -2.3 -3.1 pyridoxal phosphate biosynthetic protein pdxJ (NCBI ptt file) compare
BT3718 -2.3 -4.4 gamma-glutamyl phosphate reductase (NCBI ptt file) compare
BT0089 -2.3 -2.6 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1861 -2.3 -3.1 2-isopropylmalate synthase (EC 2.3.3.13) (from data) compare
BT3761 -2.3 -2.7 N-succinylglutamate synthase (from data) compare
p5482_02 -2.2 -4.9 hypothetical protein (NCBI) compare
BT1153 -2.2 -3.0 phosphoserine aminotransferase (NCBI ptt file) compare
BT3760 -2.2 -2.6 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
BT3758 -2.2 -2.1 N-succinylornithine aminotransferase (EC 2.6.1.81) (from data) compare
BT3705 SusR -2.2 -7.4 regulatory protein SusR (NCBI ptt file) compare
BT1379 -2.2 -2.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BT2415 -2.1 -5.2 aspartate aminotransferase (NCBI ptt file) compare
BT0532 -2.1 -2.1 anthranilate synthase component I (NCBI ptt file) compare
BT1860 -2.1 -1.5 3-isopropylmalate dehydratase large subunit (NCBI ptt file) compare
BT3717 -2.1 -2.0 N-succinylornithine carbamoyltransferase (EC 2.1.3.11) (from data) compare
BT1137 -2.1 -1.8 hypothetical protein (NCBI ptt file) compare
BT2077 -2.1 -3.4 acetolactate synthase large subunit (NCBI ptt file) compare
BT3164 -2.0 -5.7 quinolinate synthetase A (NCBI ptt file) compare
BT3361 -2.0 -3.3 erythronate-4-phosphate dehydrogenase (NCBI ptt file) compare
BT4764 -2.0 -1.3 hypothetical protein (NCBI ptt file) compare
BT3702 SusC -2.0 -6.5 SusC, outer membrane protein involved in starch binding (NCBI ptt file) compare
BT0200 -2.0 -1.3 ATP phosphoribosyltransferase (NCBI ptt file) compare
BT1058 -1.9 -10.1 two-component system sensor histidine kinase (NCBI ptt file) compare
BT1859 -1.9 -1.3 3-isopropylmalate dehydratase small subunit (NCBI ptt file) compare
BT1858 -1.9 -2.9 (R)-citramalate synthase (EC 2.3.1.182) (from data) compare
BT1970 -1.9 -4.9 glutamate dehydrogenase (NCBI ptt file) compare
BT3719 -1.9 -1.8 glutamate 5-kinase (EC 2.7.2.11) (from data) compare
BT0201 -1.9 -1.3 histidinol dehydrogenase (NCBI ptt file) compare
BT3703 SusB -1.9 -7.1 alpha-glucosidase SusB (NCBI ptt file) compare
BT2932 -1.8 -1.2 transcriptional regulator (NCBI ptt file) compare
BT3981 -1.8 -2.6 hypothetical protein (NCBI ptt file) compare
BT0530 -1.8 -1.7 anthranilate phosphoribosyltransferase (EC 2.4.2.18) (from data) compare
BT0531 -1.8 -1.7 anthranilate synthase component II (NCBI ptt file) compare
BT1336 -1.8 -2.6 putative translation initiation inhibitor (NCBI ptt file) compare
BT0674 -1.7 -2.0 carboxynorspermidine decarboxylase (NCBI ptt file) compare
BT3894 -1.7 -3.0 putative methyltransferase (NCBI ptt file) compare
BT2003 -1.7 -1.1 putative membrane peptidase (NCBI ptt file) compare
BT4191 -1.7 -3.9 hypothetical protein (NCBI ptt file) compare
BT4138 -1.7 -4.2 putative aminotransferase (NCBI ptt file) compare
BT2546 -1.6 -2.2 transcriptional regulator (NCBI ptt file) compare
BT0203 -1.6 -1.1 histidine biosynthesis bifunctional protein hisB (NCBI ptt file) compare
BT1081 -1.6 -1.5 recombination protein recR (NCBI ptt file) compare
BT4028 -1.6 -1.1 hypothetical protein (NCBI ptt file) compare
BT0529 -1.6 -1.1 indole-3-glycerol phosphate synthase (NCBI ptt file) compare
BT3699 SusF -1.6 -5.7 SusF: Outer membrane amylopectin-binding protein (from data) conserved
BT3549 -1.6 -2.2 N-succinylcitrulline desuccinylase (EC 3.5.1.-) (from data) compare
BT1419 -1.6 -1.8 hypothetical protein (NCBI ptt file) compare
BT1443 -1.6 -3.3 8-amino-7-oxononanoate synthase (NCBI ptt file) compare
BT1378 -1.6 -1.5 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) compare
BT1381 -1.6 -2.6 formyltetrahydrofolate deformylase (NCBI ptt file) compare
BT0397 -1.5 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT3394 -1.5 -6.1 putative arginine decarboxylase (NCBI ptt file) compare
BT4400 -1.5 -1.7 hypothetical protein (NCBI ptt file) compare
BT1152 -1.5 -1.0 D-3-phosphoglycerate dehydrogenase (NCBI ptt file) compare
BT4211 -1.5 -1.0 putative phosphoribosylformylglycinamidine cyclo-ligase (NCBI ptt file) compare
BT3762 -1.5 -2.0 arginine repressor, transcriptional regulator of arginine metabolism (NCBI ptt file) compare
BT2080 -1.5 -2.2 L-cysteine desulfidase cdsB (from data) compare
BT1608 -1.4 -3.3 capsule biosynthesis protein capA (NCBI ptt file) compare
BT1667 -1.4 -1.3 hypothetical protein (NCBI ptt file) compare
BT1617 -1.4 -2.6 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0048 -1.4 -2.2 hypothetical protein (NCBI ptt file) compare
BT1347 -1.4 -2.7 conserved hypothetical protein (NCBI ptt file) compare
BT1536 -1.4 -1.8 ABC transporter permease (NCBI ptt file) compare
BT0035 -1.3 -2.1 hypothetical protein (NCBI ptt file) compare
BT1746 -1.3 -1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1380 -1.3 -0.9 imidazole glycerol phosphate synthase subunit hisH (NCBI ptt file) compare
BT1361 -1.3 -3.4 DNA repair protein recN (Recombination protein N) (NCBI ptt file) compare
BT1222 -1.3 -0.9 6-phosphogluconate dehydrogenase,decarboxylating (NCBI ptt file) compare
BT3900 -1.3 -2.6 hypothetical protein (NCBI ptt file) compare
BT4644 -1.3 -1.7 putative anti-sigma factor (NCBI ptt file) compare
BT4733 -1.3 -1.4 conserved hypothetical protein (NCBI ptt file) compare
BT1844 -1.3 -2.6 transcriptional regulator, putative iron uptake regulation protein (NCBI ptt file) compare
BT2129 -1.2 -3.6 aspartate--ammonia ligase (NCBI ptt file) compare
BT0891 -1.2 -0.8 dihydroorotate dehydrogenase electron transfer subunit (NCBI ptt file) compare
BT0490 -1.2 -1.4 hypothetical protein (NCBI ptt file) compare
BT3935 -1.2 -2.0 aminotransferase (NCBI ptt file) compare
BT0527 -1.2 -1.2 tryptophan synthase alpha chain (NCBI ptt file) compare
BT0739 -1.2 -1.4 hypothetical protein (NCBI ptt file) compare
BT1933 -1.2 -1.5 transposase (NCBI ptt file) compare
BT1476 -1.2 -1.7 aspartate aminotransferase (NCBI ptt file) compare
BT2300 -1.1 -2.3 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1868 -1.1 -1.0 conserved hypothetical protein (NCBI ptt file) compare
BT3035 -1.1 -5.6 carboxy-terminal processing protease precursor (NCBI ptt file) compare
BT0700 -1.1 -2.0 GTP pyrophosphokinase (NCBI ptt file) compare
BT1421 -1.1 -3.0 hypothetical protein (NCBI ptt file) compare
BT1446 -1.1 -3.4 dethiobiotin synthetase (NCBI ptt file) compare
BT4198 -1.1 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT3253 -1.1 -1.0 phosphoribosylamine--glycine ligase (NCBI ptt file) compare
BT4447 -1.1 -2.4 conserved hypothetical protein (NCBI ptt file) compare
BT4598 -1.0 -2.3 hypothetical protein (NCBI ptt file) compare
BT1402 -1.0 -1.6 iron-sulfur flavoprotein (NCBI ptt file) compare
BT0648 -1.0 -2.2 molybdopterin biosynthesis protein (NCBI ptt file) compare
BT3441 -1.0 -1.8 hypothetical protein (NCBI ptt file) compare
BT1909 -1.0 -1.6 hypothetical protein (NCBI ptt file) compare
BT1534 -1.0 -1.0 hypothetical protein (NCBI ptt file) compare
BT4318 -1.0 -2.1 ATP-binding protein (NCBI ptt file) compare
BT1758 -1.0 -1.6 fructose transporter (from data) compare
BT0100 -1.0 -1.2 hypothetical protein (NCBI ptt file) compare
BT2075 -1.0 -2.6 acyl-ACP thioesterase (NCBI ptt file) compare
BT0605 -1.0 -2.0 putative polysaccharide export protein (NCBI ptt file) compare
BT4258 -1.0 -3.3 putative 5-formyltetrahydrofolate cyclo-ligase (NCBI ptt file) compare
BT2102 -1.0 -3.0 putative cAMP-binding domain, regulatory protein (NCBI ptt file) compare
BT0677 -1.0 -0.9 thioredoxin (TRX) (NCBI ptt file) compare
BT0528 -1.0 -1.3 phosphoribosylanthranilate isomerase (EC 5.3.1.24) (from data) compare
BT2845 -1.0 -2.5 conserved hypothetical protein (NCBI ptt file) compare
BT3073 -1.0 -3.9 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) compare
BT3936 -1.0 -1.3 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
BT3980 -1.0 -0.9 hypothetical protein (NCBI ptt file) compare
BT0875 -0.9 -2.5 beta-ureidopropionase (NCBI ptt file) compare
BT1982 -0.9 -1.3 hypothetical protein (NCBI ptt file) compare
BT1456 -0.9 -1.3 thioredoxin (TRX) (NCBI ptt file) compare
BT1396 -0.9 -1.6 transcription regulator, AraC family (NCBI ptt file) compare
BT1339 -0.9 -2.7 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase (NCBI ptt file) compare
BT0533 -0.9 -1.1 tryptophan synthase beta chain (NCBI ptt file) compare
BT3195 -0.9 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0585 -0.9 -0.8 conserved hypothetical protein (NCBI ptt file) compare
BT1442 -0.9 -2.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) compare
BT0912 -0.9 -0.8 DNA-binding protein HU (NCBI ptt file) compare
BT0679 -0.9 -1.0 cation efflux system protein czcB (NCBI ptt file) compare
BT2994 -0.9 -2.6 conserved hypothetical protein (NCBI ptt file) compare
BT0505 -0.9 -2.1 conserved hypothetical protein (NCBI ptt file) compare
BT1733 -0.9 -0.6 putative phosphoribosylformylglycinamidine synthase (NCBI ptt file) compare
BT4234 -0.9 -1.9 hypothetical protein (NCBI ptt file) compare
BT1211 -0.9 -1.5 hypothetical protein (NCBI ptt file) compare
BT3554 -0.9 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT0820 -0.9 -2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1761 -0.9 -2.6 hypothetical protein (NCBI ptt file) compare
BT3191 -0.9 -2.1 hypothetical protein (NCBI ptt file) compare
BT1342 -0.9 -2.3 putative UDP-glucuronic acid epimerase (NCBI ptt file) compare
BT1676 -0.9 -2.6 Maf protein (NCBI ptt file) compare
BT0892 -0.9 -0.8 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT1583 -0.9 -1.0 putative protein disulfide isomerase (NCBI ptt file) compare
BT0322 -0.9 -1.0 putative oxidoreductase (NCBI ptt file) compare
BT1376 -0.9 -1.0 putative ATP-binding protein involved in cell division (NCBI ptt file) compare
BT1535 -0.9 -1.0 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT2155 -0.9 -2.2 hypothetical protein (NCBI ptt file) compare
BT1988 -0.8 -1.9 hypothetical protein (NCBI ptt file) compare
BT0827 -0.8 -1.5 hypothetical protein (NCBI ptt file) compare
BT3928 -0.8 -2.5 hypothetical protein (NCBI ptt file) compare
BT1352 -0.8 -1.9 putative glycosyltransferase HI1698 (NCBI ptt file) compare
BT4570 -0.8 -2.0 hypothetical protein (NCBI ptt file) compare
BT1111 -0.8 -1.6 hypothetical protein (NCBI ptt file) compare
BT1520 -0.8 -1.0 putative transcriptional regulator (NCBI ptt file) compare
BT1943 -0.8 -2.6 hypothetical protein (NCBI ptt file) compare
BT0393 -0.8 -1.2 serine acetyltransferase (NCBI ptt file) compare
BT3883 -0.8 -1.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (NCBI ptt file) compare
BT2760 -0.8 -1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0682 -0.8 -2.6 two-component system response regulator (NCBI ptt file) compare
BT0427 -0.8 -0.9 xanthine phosphoribosyltransferase (NCBI ptt file) compare
BT3912 -0.8 -0.5 conserved hypothetical protein (NCBI ptt file) compare
BT0544 -0.8 -1.3 ammonium transporter (NCBI ptt file) compare
BT1705 -0.8 -1.7 hypothetical protein (NCBI ptt file) compare
BT1373 -0.8 -2.4 ferritin A (NCBI ptt file) compare
BT1444 -0.8 -0.7 conserved hypothetical protein (NCBI ptt file) compare
BT1979 -0.8 -1.5 Meso-diaminopimelate D-dehydrogenase (NCBI ptt file) compare
BT4768 -0.8 -1.4 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1708 -0.8 -2.8 putative capsular polysaccharide biosynthesis glycosyltransferase (NCBI ptt file) compare
BT1946 -0.8 -0.9 hypothetical protein (NCBI ptt file) compare
BT4176 -0.8 -2.3 conserved hypothetical protein, putative cytoplasmic protein (NCBI ptt file) compare
BT0954 -0.8 -1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1206 -0.8 -1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0799 -0.8 -0.7 hypothetical protein (NCBI ptt file) compare
BT4762 -0.8 -1.0 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1589 -0.8 -1.0 hypothetical protein (NCBI ptt file) compare
BT1530 -0.8 -2.0 putative outer membrane protein OprM precursor (NCBI ptt file) compare
BT0432 -0.8 -1.8 putative endonuclease BB0411 (NCBI ptt file) compare
BT0758 -0.8 -0.8 acetyltransferase (NCBI ptt file) compare
BT3694 -0.7 -0.9 glycosyltransferase (NCBI ptt file) compare
BT2417 -0.7 -0.7 conserved hypothetical protein (NCBI ptt file) compare
BT2646 -0.7 -0.8 conserved hypothetical protein (NCBI ptt file) compare
BT0973 -0.7 -1.3 hypothetical protein (NCBI ptt file) compare
BT3688 -0.7 -3.4 putative acetyltransferase (NCBI ptt file) compare
BT3318 -0.7 -2.6 signal peptidase I (NCBI ptt file) compare
BT2304 -0.7 -2.3 hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Amylopectin from Potato in Bacteroides thetaiotaomicron VPI-5482

For carbon source Amylopectin from Potato across organisms