Experiment set31S59 for Bacteroides thetaiotaomicron VPI-5482

Compare to:

Starch soluble; autoclaved 2.5 mg/ml carbon source

200 most detrimental genes:

  gene name fitness t score description  
BT3642 +6.5 30.4 Na+-dependent transporter (NCBI ptt file) compare
BT4453 +3.7 2.0 6-pyruvoyl-tetrahydropterin synthase (NCBI ptt file) compare
BT0844 +2.0 2.1 hypothetical protein (NCBI ptt file) compare
BT0869 +2.0 3.0 hypothetical protein (NCBI ptt file) compare
BT0238 +1.9 2.4 transcriptional regulator (NCBI ptt file) compare
BT1947 +1.8 2.5 hypothetical protein (NCBI ptt file) compare
BT1534 +1.8 3.1 hypothetical protein (NCBI ptt file) compare
BT0185 +1.7 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT4753 +1.7 2.2 hypothetical protein (NCBI ptt file) compare
BT3812 +1.7 6.6 phosphoribosylaminoimidazole carboxy formyl formyltransferase; inosine-monophosphate cyclohydrolase; bifunctional purine biosynthesis protein purH (NCBI ptt file) compare
BT1466 +1.6 3.3 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0231 +1.5 2.1 excisionase (NCBI ptt file) compare
BT2841 +1.4 3.0 pyruvate kinase (NCBI ptt file) compare
BT1704 +1.3 1.7 hypothetical protein (NCBI ptt file) compare
BT1482 +1.3 2.8 two-component system response regulator (NCBI ptt file) compare
BT1412 +1.3 2.5 iron-sulfur flavoprotein (NCBI ptt file) compare
BT0786 +1.2 2.7 putative integral membrane protein (NCBI ptt file) compare
BT1576 +1.2 1.8 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT1493 +1.2 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT2344 +1.1 1.9 hypothetical protein (NCBI ptt file) compare
BT1845 +1.1 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT0063 +1.1 1.7 hypothetical protein (NCBI ptt file) compare
BT0934 +1.1 2.7 hypothetical protein (NCBI ptt file) compare
BT2979 +1.0 4.2 conserved hypothetical protein, putative membrane protein (NCBI ptt file) compare
BT0816 +1.0 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT1146 +1.0 2.8 putative metallo-beta-lactamase (NCBI ptt file) compare
BT1962 +1.0 2.1 hypothetical protein (NCBI ptt file) compare
BT1127 +1.0 1.1 mobilization protein BmgB (NCBI ptt file) compare
BT1899 +1.0 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT1693 +1.0 2.4 periplasmic linker protein, putative multidrug resistance protein (NCBI ptt file) compare
BT0187 +1.0 2.3 conserved hypothetical protein (NCBI ptt file) compare
BT1259 +1.0 3.0 choloylglycine hydrolase (NCBI ptt file) compare
BT4305 +1.0 7.1 putative alpha-amylase (NCBI ptt file) compare
BT2099 +0.9 2.6 Fe3+ ABC transporter, permease (NCBI ptt file) compare
BT2236 +0.9 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT0028 +0.9 2.4 alkaline phosphatase (NCBI ptt file) compare
BT0501 +0.9 1.6 hypothetical protein (NCBI ptt file) compare
BT4346 +0.9 1.7 conserved hypothetical protein, with a Metallo-beta-lactamase superfamily domain (NCBI ptt file) compare
BT2042 +0.9 1.5 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) compare
BT0563 +0.9 2.4 putative ABC transporter ATP-binding protein or permease protein (NCBI ptt file) compare
BT4027 +0.9 1.5 hypothetical protein (NCBI ptt file) compare
BT3839 +0.9 1.2 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0795 +0.9 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT3356 +0.9 2.8 6-phosphofructokinase (NCBI ptt file) compare
BT1133 +0.9 2.7 hypothetical protein (NCBI ptt file) compare
BT0967 +0.9 0.9 hypothetical protein (NCBI ptt file) compare
BT1126 +0.9 2.1 mobilization protein BmgA (NCBI ptt file) compare
BT0411 +0.9 2.3 CysQ, sulfite synthesis pathway protein (NCBI ptt file) compare
BT3641 +0.8 3.7 conserved hypothetical protein (NCBI ptt file) compare
BT1369 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
BT0073 +0.8 3.1 putative ABC transporter, ATP-binding protein (NCBI ptt file) compare
BT4607 +0.8 1.8 conserved hypothetical protein (NCBI ptt file) compare
BT3843 +0.8 3.0 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) compare
BT4043 +0.8 4.9 dimethyladenosine transferase (NCBI ptt file) compare
BT0518 +0.8 3.5 Bifunctional purine biosynthesis protein, putative 5-aminoimidazole-4-carboxamide ribonucleotide(AICAR) transformylase/IMP cyclohydrolase (NCBI ptt file) compare
BT1569 +0.8 2.0 conserved hypothetical protein (NCBI ptt file) compare
BT1504 +0.8 2.7 hypothetical protein (NCBI ptt file) compare
BT2799 +0.8 2.6 putative PfkB family carbohydrate kinase (NCBI ptt file) compare
BT1326 +0.8 1.4 TPR-domain containing protein (NCBI ptt file) compare
BT2208 +0.8 2.1 hypothetical protein (NCBI ptt file) compare
BT2490 +0.8 1.4 hypothetical protein (NCBI ptt file) compare
BT1944 +0.8 1.3 putative transposase (NCBI ptt file) compare
BT3200 +0.8 1.6 putative N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT0153 +0.8 2.1 hypothetical protein (NCBI ptt file) compare
BT1169 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
BT4531 +0.8 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT3704 SusA +0.8 4.4 SusA: alpha-amylase / neopullulanase / cyclomaltodextrinase (EC 3.2.1.135; EC 3.2.1.54) (from data) compare
BT4704 +0.8 2.9 O-succinylbenzoic acid--CoA ligase (NCBI ptt file) compare
BT0297 +0.8 2.6 putative outer membrane lipoprotein silC precursor (NCBI ptt file) compare
BT1470 +0.7 1.2 putative two-component system sensor histidine kinase (NCBI ptt file) compare
BT0361 +0.7 3.0 hypothetical protein (NCBI ptt file) compare
BT4746 +0.7 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT1641 +0.7 1.0 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
BT3643 +0.7 3.3 conserved hypothetical protein (NCBI ptt file) compare
BT0616 +0.7 1.3 conserved hypothetical protein (NCBI ptt file) compare
BT2283 +0.7 1.0 hypothetical protein (NCBI ptt file) compare
BT1202 +0.7 1.0 UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file) compare
BT1276 +0.7 1.9 L-fucose mutarotase FucU (EC 5.1.3.29) (from data) compare
BT3973 +0.7 2.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) compare
BT1080 +0.7 1.4 hypothetical protein (NCBI ptt file) compare
BT2272 +0.7 2.7 conserved hypothetical protein (NCBI ptt file) compare
BT2059 +0.7 0.7 TonB (NCBI ptt file) compare
BT4582 +0.7 3.7 amidophosphoribosyltransferase precursor (NCBI ptt file) compare
BT1455 +0.7 1.8 protein rtcB (NCBI ptt file) compare
BT1680 +0.7 1.5 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT0842 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
BT0825 +0.7 1.6 altronate oxidoreductase (NCBI ptt file) compare
BT0619 +0.7 0.7 Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file) compare
BT0427 +0.7 1.3 xanthine phosphoribosyltransferase (NCBI ptt file) compare
BT0010 +0.7 1.5 hypothetical protein (NCBI ptt file) compare
BT0777 +0.7 1.3 hypothetical protein (NCBI ptt file) compare
BT1262 +0.7 0.8 putative transcriptional regulator (NCBI ptt file) compare
BT0949 +0.7 1.1 hypothetical protein (NCBI ptt file) compare
BT0611 +0.7 1.0 glycosyltransferase (NCBI ptt file) compare
BT4498 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
BT1974 +0.7 3.3 metallopeptidase family M24, putative Xaa-Pro dipeptidase (NCBI ptt file) compare
BT2597 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
BT1633 +0.7 2.5 mannose-1-phosphate guanyltransferase (NCBI ptt file) compare
BT3734 +0.7 2.2 oxidoreductase (NCBI ptt file) compare
BT1431 +0.7 1.7 putative DNA polymerase III epsilon chain (NCBI ptt file) compare
BT1109 +0.7 2.0 ferritin A (NCBI ptt file) compare
BT1186 +0.7 1.5 ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0335 +0.6 2.2 putative ATPase (NCBI ptt file) compare
BT3037 +0.6 2.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4242 +0.6 2.4 putative transporter (NCBI ptt file) compare
BT1189 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1884 +0.6 1.4 cold shock protein, putative DNA-binding protein (NCBI ptt file) compare
BT3690 +0.6 1.5 putative membrane protein (NCBI ptt file) compare
BT4698 +0.6 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT4483 +0.6 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0418 +0.6 1.2 outer membrane porin F precursor (NCBI ptt file) compare
BT0225 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
BT2081 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
BT4416 +0.6 1.7 Cu2+ homeostasis protein CutC (NCBI ptt file) compare
BT0188 +0.6 1.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT0077 +0.6 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT3881 +0.6 2.7 hypothetical protein (NCBI ptt file) compare
BT1009 +0.6 1.3 dihydroorotate dehydrogenase (NCBI ptt file) compare
BT1330 +0.6 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0085 +0.6 1.5 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT2492 +0.6 2.6 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare
BT4086 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
BT0033 +0.6 1.2 hypothetical protein (NCBI ptt file) compare
BT1561 +0.6 0.6 hypothetical protein (NCBI ptt file) compare
BT2142 +0.6 0.7 conserved hypothetical protein, with a conserved domain (NCBI ptt file) compare
BT1021 +0.6 1.6 arabinosidase (NCBI ptt file) compare
BT0431 +0.6 2.1 conserved hypothetical protein with conserved domain (NCBI ptt file) compare
BT3063 +0.6 2.3 hypothetical protein (NCBI ptt file) compare
BT0173 +0.6 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT1107 +0.6 1.2 ferritin A (NCBI ptt file) compare
BT2299 +0.6 0.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1084 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
BT3486 +0.6 2.5 N-acetylgalactosamine-6-sulfatase precursor (NCBI ptt file) compare
BT1428 +0.6 1.7 conserved hypothetical protein (NCBI ptt file) compare
BT1958 +0.6 1.1 hypothetical protein (NCBI ptt file) compare
BT3251 +0.6 3.4 conserved hypothetical protein, putative integral membrane protein (NCBI ptt file) compare
BT2062 +0.6 2.4 6-phosphofructokinase (NCBI ptt file) compare
BT2040 +0.5 2.2 hypothetical protein (NCBI ptt file) compare
BT4265 +0.5 0.6 GMP synthase (glutamine-hydrolyzing) (NCBI ptt file) compare
BT0181 +0.5 1.4 putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file) compare
BT3856 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT3481 +0.5 1.0 putative glutaminase A (NCBI ptt file) compare
BT1811 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
BT1198 +0.5 1.6 LemA protein (NCBI ptt file) compare
BT0761 +0.5 2.1 conserved hypothetical protein (NCBI ptt file) compare
BT1461 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT1600 +0.5 2.1 BexA, membrane proein (NCBI ptt file) compare
BT4559 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT2389 +0.5 0.9 putative transport protein (NCBI ptt file) compare
BT1255 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT3143 +0.5 2.1 mobilization protein BmgA (NCBI ptt file) compare
BT4149 +0.5 1.4 exo-poly-alpha-D-galacturonosidase precursor (NCBI ptt file) compare
BT1392 +0.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT1457 +0.5 1.6 two-component system response regulator (NCBI ptt file) compare
BT1981 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
BT1701 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT2646 +0.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
BT0400 +0.5 1.0 putative tyrosine-protein kinase in capsular polysaccharide biosynthesis region (NCBI ptt file) compare
BT0756 +0.5 0.7 iduronate 2-sulfatase precursor (NCBI ptt file) compare
BT0704 +0.5 0.8 phosphoribosylglycinamide formyltransferase 2 (NCBI ptt file) compare
BT1031 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
BT3782 +0.5 2.3 putative hydrolase (NCBI ptt file) compare
BT1827 +0.5 2.8 transposase (NCBI ptt file) compare
BT4478 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT0327 +0.5 0.8 glutamine ABC transporter, periplasmic glutamine-binding protein (glnH) (NCBI ptt file) compare
BT1969 +0.5 2.9 NADP-dependent malate dehydrogenase (NCBI ptt file) compare
BT2218 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT1320 +0.5 1.4 putative transcriptional regulator, phosphate uptake regulation (NCBI ptt file) compare
BT0639 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
BT0782 +0.5 0.7 hypothetical protein (NCBI ptt file) compare
BT1634 +0.5 2.7 conserved hypothetical protein (NCBI ptt file) compare
BT0860 +0.5 0.7 putative ABC transporter ATP-binding protein (NCBI ptt file) compare
BT0399 +0.5 1.7 tyrosine-protein kinase ptk involved in exopolysaccharide biosynthesis (NCBI ptt file) compare
BT0101 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
BT0133 +0.5 1.8 putative sugar phosphate isomerase (NCBI ptt file) compare
BT0320 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
BT4485 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
BT1994 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
BT0087 +0.5 0.9 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1064 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
BT0256 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT0223 +0.5 1.1 two-component system response regulator (NCBI ptt file) compare
BT0215 +0.5 0.9 iron uptake regulatory protein (NCBI ptt file) compare
BT0678 +0.5 1.1 cation efflux system protein czcC (NCBI ptt file) compare
BT1624 +0.5 2.1 putative secreted sulfatase (NCBI ptt file) compare
BT1558 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
BT4773 +0.5 1.2 conserved protein found in conjugate transposon (NCBI ptt file) compare
BT1411 +0.5 1.0 methylated-DNA--protein-cysteine methyltransferase (NCBI ptt file) compare
BT3832 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
BT0568 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
BT0815 +0.5 0.9 conserved hypothetical protein (NCBI ptt file) compare
BT2043 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
BT0944 +0.5 0.7 hypothetical protein (NCBI ptt file) compare
BT3399 +0.5 1.6 putative zinc protease (NCBI ptt file) compare
BT3249 +0.5 2.3 putative zinc ABC transporter, zinc-binding protein (NCBI ptt file) compare
BT2018 +0.5 1.4 conserved hypothetical protein (NCBI ptt file) compare
BT0147 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
BT0017 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
BT3802 +0.5 1.5 peptidyl-prolyl cis-trans isomerase, cyclophilin-type (NCBI ptt file) compare
BT2198 +0.4 2.1 RNA polymerase ECF-type sigma factor (NCBI ptt file) compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source Starch in Bacteroides thetaiotaomicron VPI-5482

For carbon source Starch across organisms