Experiment set31S528 for Burkholderia phytofirmans PsJN

Compare to:

Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

200 most important genes:

  gene name fitness t score description  
BPHYT_RS17690 -8.3 -5.8 imidazole glycerol phosphate synthase compare
BPHYT_RS02685 -7.9 -7.7 cytochrome C oxidase subunit I compare
BPHYT_RS17685 -7.9 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS16835 -7.8 -4.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS17400 -7.8 -5.4 anthranilate phosphoribosyltransferase compare
BPHYT_RS33835 -7.8 -5.1 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17680 -7.5 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS02610 -7.4 -3.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33535 -7.3 -26.7 RNA polymerase sigma factor RpoD compare
BPHYT_RS33915 -7.1 -4.4 isopropylmalate isomerase compare
BPHYT_RS03150 -6.9 -10.6 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17675 -6.9 -1.5 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS14915 -6.9 -4.5 phosphoserine aminotransferase compare
BPHYT_RS17670 -6.9 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS02570 -6.8 -4.8 phosphocarrier protein HPr compare
BPHYT_RS33880 -6.7 -4.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17395 -6.7 -1.4 anthranilate synthase subunit II compare
BPHYT_RS33900 -6.7 -7.9 3-isopropylmalate dehydrogenase compare
BPHYT_RS06065 -6.6 -10.0 cytochrome C compare
BPHYT_RS17945 -6.6 -1.4 cytochrome C biogenesis protein compare
BPHYT_RS02690 -6.5 -9.4 protoheme IX farnesyltransferase compare
BPHYT_RS14910 -6.4 -10.8 chorismate mutase compare
BPHYT_RS17380 -6.4 -8.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS04965 -6.4 -4.4 ATP-binding protein compare
BPHYT_RS02665 -6.3 -9.8 MFS transporter compare
BPHYT_RS14275 -6.3 -1.4 hypothetical protein compare
BPHYT_RS04955 -6.3 -1.4 methionyl-tRNA synthetase compare
BPHYT_RS02590 -6.3 -6.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS02640 -6.1 -12.8 cytochrome C oxidase compare
BPHYT_RS15915 -5.9 -4.1 ornithine carbamoyltransferase compare
BPHYT_RS06070 -5.9 -6.9 cytochrome C compare
BPHYT_RS15920 -5.9 -8.1 argininosuccinate synthase compare
BPHYT_RS33865 -5.9 -4.1 tryptophan synthase alpha chain compare
BPHYT_RS06400 -5.9 -3.2 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS06555 -5.9 -5.4 ketol-acid reductoisomerase compare
BPHYT_RS06545 -5.8 -7.9 acetolactate synthase compare
BPHYT_RS02905 -5.8 -21.4 RNA polymerase subunit sigma-54 compare
BPHYT_RS17855 -5.8 -10.4 glutamate synthase compare
BPHYT_RS12845 -5.7 -14.3 ATPase compare
BPHYT_RS17765 -5.6 -5.5 toluene ABC transporter ATP-binding protein compare
BPHYT_RS16245 -5.6 -3.2 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS18760 -5.6 -2.1 flagellar biosynthesis protein FliT compare
BPHYT_RS02650 -5.6 -1.2 membrane protein compare
BPHYT_RS12150 -5.5 -13.3 PII uridylyl-transferase compare
BPHYT_RS01595 -5.5 -8.3 homoserine O-acetyltransferase compare
BPHYT_RS35885 -5.5 -2.2 hypothetical protein compare
BPHYT_RS22865 -5.5 -2.0 ATPase compare
BPHYT_RS16270 -5.4 -3.0 phosphoglycerate kinase compare
BPHYT_RS28705 -5.4 -1.2 IclR family transcriptional regulator compare
BPHYT_RS17265 -5.2 -1.1 cell division protein compare
BPHYT_RS08955 -5.2 -3.1 homoserine dehydrogenase compare
BPHYT_RS17715 -5.1 -6.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS17390 -5.1 -10.8 anthranilate synthase subunit I compare
BPHYT_RS03730 -4.9 -2.5 transcriptional repressor NrdR compare
BPHYT_RS17405 -4.9 -1.1 indole-3-glycerol phosphate synthase compare
BPHYT_RS16210 -4.9 -2.9 peptidase compare
BPHYT_RS14400 -4.8 -2.8 anti-sigma factor compare
BPHYT_RS17885 -4.8 -3.3 3-dehydroquinate synthase compare
BPHYT_RS11040 -4.7 -1.0 GntR family transcriptional regulator compare
BPHYT_RS04725 -4.7 -6.4 sulfite reductase compare
BPHYT_RS22190 -4.7 -1.2 nucleoid-structuring protein H-NS compare
BPHYT_RS04720 -4.7 -4.7 transcriptional regulator compare
BPHYT_RS13220 -4.7 -6.1 phosphomethylpyrimidine synthase compare
BPHYT_RS12725 -4.6 -15.2 regulator compare
BPHYT_RS10095 -4.6 -1.7 integrase compare
BPHYT_RS02555 -4.6 -11.8 glutamate--cysteine ligase compare
BPHYT_RS12055 -4.6 -13.5 phosphoenolpyruvate synthase compare
BPHYT_RS02540 -4.5 -1.4 hypothetical protein compare
BPHYT_RS17920 -4.5 -1.4 protein CyaY compare
BPHYT_RS19680 -4.5 -13.4 glutamate--cysteine ligase compare
BPHYT_RS13705 -4.5 -2.1 chorismate synthase compare
BPHYT_RS10100 -4.4 -3.5 dihydroxy-acid dehydratase compare
BPHYT_RS17890 -4.4 -1.6 shikimate kinase compare
BPHYT_RS16085 -4.3 -3.4 DeoR faimly transcriptional regulator compare
BPHYT_RS08245 -4.3 -5.3 anti-sigma factor compare
BPHYT_RS13645 -4.3 -21.6 threonine--tRNA ligase compare
BPHYT_RS04745 -4.3 -5.5 sulfate adenylyltransferase compare
BPHYT_RS33875 -4.1 -5.4 tryptophan synthase subunit alpha compare
BPHYT_RS08975 -4.1 -3.4 molybdenum cofactor biosynthesis protein MoaE compare
BPHYT_RS17760 -4.1 -7.0 ABC transporter permease compare
BPHYT_RS34780 -4.0 -2.9 phytoene synthase compare
BPHYT_RS06900 -4.0 -2.8 aspartate aminotransferase compare
BPHYT_RS33920 -3.9 -3.8 type II citrate synthase compare
BPHYT_RS13605 -3.9 -0.8 tRNA-Pro compare
BPHYT_RS26535 -3.9 -3.4 GntR family transcriptional regulator compare
BPHYT_RS02575 -3.8 -14.0 phosphoenolpyruvate-protein phosphotransferase compare
BPHYT_RS12990 -3.8 -1.5 iron transporter compare
BPHYT_RS04740 -3.8 -4.9 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS17700 -3.7 -2.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS33905 -3.7 -1.1 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS11390 -3.7 -10.4 penicillin-binding protein 1A compare
BPHYT_RS06905 -3.7 -7.3 excinuclease ABC subunit B compare
BPHYT_RS02525 -3.6 -6.2 membrane protein compare
BPHYT_RS04335 -3.6 -1.3 membrane protein compare
BPHYT_RS06600 -3.6 -1.5 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS02860 -3.6 -0.8 membrane protein compare
BPHYT_RS16180 -3.6 -0.8 TetR family transcriptional regulator compare
BPHYT_RS12530 -3.6 -2.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS12785 -3.5 -2.2 Rrf2 family transcriptional regulator compare
BPHYT_RS33645 -3.5 -2.6 homoserine kinase compare
BPHYT_RS18970 -3.5 -13.7 chemotaxis protein compare
BPHYT_RS13595 -3.4 -4.2 IclR family transcriptional regulator compare
BPHYT_RS14865 -3.4 -1.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS03645 -3.4 -1.4 tRNA dimethylallyltransferase compare
BPHYT_RS36220 -3.4 -1.3 hypothetical protein compare
BPHYT_RS33840 -3.4 -6.4 amidophosphoribosyltransferase compare
BPHYT_RS03135 -3.3 -6.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS02560 -3.3 -6.0 glutathione synthetase compare
BPHYT_RS02680 -3.3 -8.3 cytochrome C oxidase subunit I compare
BPHYT_RS01685 -3.3 -11.9 phytanoyl-CoA dioxygenase compare
BPHYT_RS33580 -3.2 -3.1 geranyltranstransferase compare
BPHYT_RS16430 -3.2 -14.9 cytochrome C compare
BPHYT_RS06405 -3.2 -4.7 phosphoribosylamine--glycine ligase compare
BPHYT_RS16435 -3.1 -9.6 alcohol dehydrogenase compare
BPHYT_RS06530 -3.1 -0.9 membrane protein compare
BPHYT_RS14715 -3.1 -6.5 molybdenum cofactor biosynthesis protein MogA compare
BPHYT_RS06550 -3.1 -1.9 acetolactate synthase compare
BPHYT_RS11235 -3.1 -0.9 hypothetical protein compare
BPHYT_RS01955 -3.1 -3.5 hypothetical protein compare
BPHYT_RS16665 -3.1 -2.2 peroxiredoxin compare
BPHYT_RS22325 -3.0 -2.0 histidine kinase compare
BPHYT_RS23930 -3.0 -3.1 triphosphoribosyl-dephospho-CoA synthase compare
BPHYT_RS14895 -3.0 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS16575 -2.9 -12.7 Xaa-Pro aminopeptidase compare
BPHYT_RS05010 -2.9 -2.3 RpiR family transcriptional regulator compare
BPHYT_RS17745 -2.9 -5.5 toluene tolerance family protein compare
BPHYT_RS12465 -2.9 -1.2 inositol monophosphatase compare
BPHYT_RS09385 -2.8 -0.9 FAD-dependent oxidoreductase compare
BPHYT_RS03535 -2.8 -3.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS16945 -2.8 -5.9 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
BPHYT_RS33610 -2.8 -1.2 DNA polymerase I compare
BPHYT_RS36275 -2.8 -1.3 hypothetical protein compare
BPHYT_RS06685 -2.8 -1.1 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS00690 -2.7 -0.8 transcriptional regulator compare
BPHYT_RS17095 -2.7 -1.4 proline--tRNA ligase compare
BPHYT_RS09330 -2.7 -11.0 phytoene synthase compare
BPHYT_RS21705 -2.7 -4.9 sulfoacetaldehyde acetyltransferase compare
BPHYT_RS01960 -2.7 -3.2 cytochrome C compare
BPHYT_RS03625 -2.7 -8.9 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS05960 -2.7 -5.0 endoribonuclease L-PSP compare
BPHYT_RS08945 -2.7 -6.6 hypothetical protein compare
BPHYT_RS06975 -2.6 -1.1 glutamate racemase compare
BPHYT_RS14900 -2.6 -1.8 prephenate dehydrogenase compare
BPHYT_RS15710 -2.6 -1.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS01590 -2.6 -5.6 methionine biosynthesis protein MetW compare
BPHYT_RS18320 -2.6 -1.8 orotate phosphoribosyltransferase compare
BPHYT_RS12935 -2.6 -5.2 chemotaxis protein CheY compare
BPHYT_RS23910 -2.6 -1.2 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS18765 -2.6 -4.7 flagellar biosynthesis protein FliS compare
BPHYT_RS09650 -2.6 -1.2 hypothetical protein compare
BPHYT_RS14490 -2.6 -8.0 molybdenum cofactor biosynthesis protein MoeA compare
BPHYT_RS20155 -2.5 -1.1 hypothetical protein compare
BPHYT_RS16320 -2.5 -2.5 cyclic pyranopterin monophosphate synthase accessory protein compare
BPHYT_RS23445 -2.5 -1.5 hexuronate transporter compare
BPHYT_RS04080 -2.5 -4.9 chloride channel protein compare
BPHYT_RS33540 -2.5 -1.7 hypothetical protein compare
BPHYT_RS14755 -2.5 -2.1 tRNA (guanine-N(1)-)-methyltransferase compare
BPHYT_RS17620 -2.5 -6.7 cytochrome C compare
BPHYT_RS14495 -2.4 -5.4 molybdopterin-guanine dinucleotide biosynthesis protein A compare
BPHYT_RS16075 -2.4 -8.2 D-arabinitol 4-dehydrogenase compare
BPHYT_RS22400 -2.4 -1.1 hypothetical protein compare
BPHYT_RS15620 -2.4 -2.4 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02695 -2.4 -6.5 photosynthetic protein synthase I compare
BPHYT_RS17955 -2.4 -7.8 cytochrome C compare
BPHYT_RS12840 -2.4 -1.6 pyruvate dehydrogenase compare
BPHYT_RS33655 -2.3 -1.9 MarR family transcriptional regulator compare
BPHYT_RS26510 -2.3 -1.4 transcriptional regulator compare
BPHYT_RS14060 -2.3 -1.4 peptidase M23 compare
BPHYT_RS08615 -2.3 -1.1 hypothetical protein compare
BPHYT_RS27295 -2.3 -1.0 hypothetical protein compare
BPHYT_RS10345 -2.3 -0.8 flagellar motor protein MotB compare
BPHYT_RS03280 -2.2 -0.9 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS19325 -2.2 -1.9 glycine cleavage system H protein compare
BPHYT_RS15415 -2.2 -6.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14500 -2.2 -2.2 molybdenum cofactor biosynthesis protein MoaA compare
BPHYT_RS06540 -2.2 -3.7 RNA polymerase sigma70 factor compare
BPHYT_RS15750 -2.2 -6.6 elongation factor G compare
BPHYT_RS01500 -2.2 -11.3 7-cyano-7-deazaguanine synthase compare
BPHYT_RS22730 -2.2 -2.8 serine/threonine kinase compare
BPHYT_RS16990 -2.2 -6.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
BPHYT_RS06075 -2.2 -3.3 hypothetical protein compare
BPHYT_RS04890 -2.2 -0.9 cobalamin biosynthesis protein CobD compare
BPHYT_RS25950 -2.2 -2.3 sensor histidine kinase compare
BPHYT_RS02675 -2.1 -5.7 hypothetical protein compare
BPHYT_RS17520 -2.1 -3.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS01950 -2.1 -2.6 phosphoheptose isomerase compare
BPHYT_RS03410 -2.1 -1.4 queuine tRNA-ribosyltransferase compare
BPHYT_RS16975 -2.1 -4.8 shikimate 5-dehydrogenase compare
BPHYT_RS16080 -2.1 -4.9 xylulokinase compare
BPHYT_RS18705 -2.1 -1.3 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS16090 -2.1 -1.0 hypothetical protein compare
BPHYT_RS02635 -2.1 -5.0 membrane protein compare
BPHYT_RS18785 -2.1 -1.5 flagellar assembly protein FliH compare
BPHYT_RS24285 -2.1 -1.1 TetR family transcriptional regulator compare
BPHYT_RS34610 -2.1 -5.9 histidine kinase compare
BPHYT_RS09500 -2.1 -2.4 glucose-6-phosphate isomerase compare
BPHYT_RS03640 -2.1 -1.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS06470 -2.1 -1.0 membrane protein compare
BPHYT_RS13200 -2.0 -1.2 molybdopterin binding oxidoreductase compare
BPHYT_RS14210 -2.0 -3.4 hydroxyacylglutathione hydrolase compare


Specific Phenotypes

For 22 genes in this experiment

For in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 in Burkholderia phytofirmans PsJN

For in planta Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10 across organisms